0s autopkgtest [22:24:10]: starting date and time: 2024-03-25 22:24:10+0000 0s autopkgtest [22:24:10]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [22:24:10]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.b4zvyx7f/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed --apt-upgrade r-cran-lwgeom --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 r-cran-sf/1.0-15+dfsg-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-11.secgroup --name adt-noble-amd64-r-cran-lwgeom-20240325-222410-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [22:25:35]: testbed dpkg architecture: amd64 85s autopkgtest [22:25:35]: testbed apt version: 2.7.12 85s autopkgtest [22:25:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3981 kB] 86s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7608 B] 86s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [497 kB] 86s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [484 kB] 86s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [729 kB] 86s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 86s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [35.1 kB] 86s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 86s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 86s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1270 kB] 86s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4427 kB] 86s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 86s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.8 kB] 86s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [28.6 kB] 86s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 89s Fetched 11.7 MB in 2s (7764 kB/s) 89s Reading package lists... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade... 92s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded. 93s sh: Attempting to set up Debian/Ubuntu apt sources automatically 93s Reading package lists...sh: Distribution appears to be Ubuntu 94s 95s Building dependency tree... 95s Reading state information... 95s eatmydata is already the newest version (131-1). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s dbus is already the newest version (1.14.10-4ubuntu1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s rng-tools-debian is already the newest version (2.4). 97s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s The following packages will be REMOVED: 97s cloud-init* python3-configobj* python3-debconf* 98s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 98s After this operation, 3256 kB disk space will be freed. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 98s Removing cloud-init (24.1.2-0ubuntu1) ... 98s Removing python3-configobj (5.0.8-3) ... 98s Removing python3-debconf (1.5.86) ... 98s Processing triggers for man-db (2.12.0-3) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71475 files and directories currently installed.) 99s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 100s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 100s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 100s invoke-rc.d: policy-rc.d denied execution of try-restart. 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s linux-generic is already the newest version (6.8.0-11.11+1). 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 101s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 103s Reading package lists... 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s autopkgtest [22:25:54]: rebooting testbed after setup commands that affected boot 144s autopkgtest [22:26:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 144s autopkgtest [22:26:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-cran-lwgeom 145s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-cran-lwgeom 0.2-13-3 (dsc) [2513 B] 145s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-cran-lwgeom 0.2-13-3 (tar) [475 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-cran-lwgeom 0.2-13-3 (diff) [4160 B] 146s gpgv: Signature made Tue Jan 9 16:00:49 2024 UTC 146s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 146s gpgv: issuer "tille@debian.org" 146s gpgv: Can't check signature: No public key 146s dpkg-source: warning: cannot verify inline signature for ./r-cran-lwgeom_0.2-13-3.dsc: no acceptable signature found 146s autopkgtest [22:26:36]: testing package r-cran-lwgeom version 0.2-13-3 146s autopkgtest [22:26:36]: build not needed 148s autopkgtest [22:26:38]: test run-unit-test: preparing testbed 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s Starting pkgProblemResolver with broken count: 0 152s Starting 2 pkgProblemResolver with broken count: 0 152s Done 152s The following additional packages will be installed: 152s fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 152s fonts-glyphicons-halflings gdal-data gdal-plugins libaec0 libarmadillo12 152s libarpack2 libblas3 libblosc1 libcairo2 libcfitsio10 libdatrie1 libdav1d7 152s libde265-0 libdeflate0 libfontconfig1 libfreexl1 libfyba0 libgdal34 152s libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran5 libgif7 libgomp1 152s libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 libhdf5-hl-100 152s libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libjbig0 152s libjpeg-turbo8 libjpeg8 libjs-bootstrap libkmlbase1 libkmldom1 libkmlengine1 152s liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1 libmysqlclient21 152s libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 libpango-1.0-0 152s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 152s libpoppler134 libpq5 libproj25 libqhull-r8.0 librttopo1 libsharpyuv0 libsm6 152s libsnappy1v5 libspatialite8 libsuperlu6 libsz2 libtcl8.6 libthai-data 152s libthai0 libtiff6 libtk8.6 libudunits2-0 libudunits2-data liburiparser1 152s libwebp7 libxcb-render0 libxcb-shm0 libxerces-c3.2 libxft2 libxrender1 152s libxss1 libxt6 littler mysql-common node-html5shiv proj-data r-base-core 152s r-cran-askpass r-cran-brio r-cran-callr r-cran-class r-cran-classint 152s r-cran-cli r-cran-covr r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc 152s r-cran-diffobj r-cran-digest r-cran-e1071 r-cran-evaluate r-cran-fansi 152s r-cran-fs r-cran-geosphere r-cran-glue r-cran-httr r-cran-jsonlite 152s r-cran-kernsmooth r-cran-lattice r-cran-lazyeval r-cran-lifecycle 152s r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-mass r-cran-mime 152s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 152s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-proxy 152s r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang 152s r-cran-rprojroot r-cran-s2 r-cran-sf r-cran-sp r-cran-sys r-cran-testthat 152s r-cran-tibble r-cran-units r-cran-utf8 r-cran-vctrs r-cran-waldo 152s r-cran-withr r-cran-wk r-cran-yaml unixodbc-common unzip x11-common 152s xdg-utils zip 152s Suggested packages: 152s geotiff-bin gdal-bin libgeotiff-epsg libhdf4-doc libhdf4-alt-dev hdf4-tools 152s libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc 152s libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e 152s libheif-plugin-svtenc liblcms2-utils odbc-postgresql tdsodbc ogdi-bin 152s proj-bin tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib 152s r-base-html r-cran-spelling r-cran-rstudioapi r-cran-rmysql r-cran-knitr 152s r-cran-rmarkdown r-cran-getopt r-cran-bit64 r-cran-dplyr r-cran-formattable 152s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 152s r-cran-stringi r-cran-survival r-cran-vdiffr r-cran-inline r-cran-hmisc 152s r-cran-roxygen2 r-cran-rvest r-cran-stringr r-cran-bench r-cran-blob 152s r-cran-here r-cran-hms r-cran-htmltools r-cran-purrr r-cran-tidyr 152s Recommended packages: 152s proj-bin libheif-plugin-aomenc libheif-plugin-x265 poppler-data 152s r-recommended r-base-dev r-doc-html r-cran-cliapp r-cran-mockery 152s r-cran-spdata r-cran-knitr r-cran-rmarkdown r-cran-tinytest r-cran-htmltools 152s r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-dt r-cran-xml2 152s r-cran-memoise r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils 152s r-cran-gh r-cran-ggplot2 r-cran-unitizer r-cran-raster r-cran-dplyr 152s r-cran-rsqlite r-cran-jpeg r-cran-png r-cran-readr r-cran-r.rsp r-cran-lintr 152s r-cran-tidyverse r-cran-sodium r-cran-lubridate r-cran-cpp11 r-cran-bitops 152s r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-codetools r-cran-webfakes 152s r-cran-cba r-cran-pingr r-cran-usethis r-cran-bit64 r-cran-blob r-cran-maps 152s r-cran-matrix r-cran-pbapply r-cran-rpostgresql r-cran-spatstat 152s r-cran-spatstat.geom r-cran-spatstat.random r-cran-spatstat.linnet 152s r-cran-spatstat.utils r-cran-stars r-cran-terra r-cran-tidyr 152s r-cran-tidyselect r-cran-rcolorbrewer r-cran-gstat r-cran-deldir 152s r-cran-shiny r-cran-data.table r-cran-formattable r-cran-vdiffr 152s r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-runit 152s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 152s x11-xserver-utils 152s The following NEW packages will be installed: 152s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 152s fonts-dejavu-mono fonts-glyphicons-halflings gdal-data gdal-plugins libaec0 152s libarmadillo12 libarpack2 libblas3 libblosc1 libcairo2 libcfitsio10 152s libdatrie1 libdav1d7 libde265-0 libdeflate0 libfontconfig1 libfreexl1 152s libfyba0 libgdal34 libgeos-c1v5 libgeos3.12.1 libgeotiff5 libgfortran5 152s libgif7 libgomp1 libgraphite2-3 libharfbuzz0b libhdf4-0-alt libhdf5-103-1 152s libhdf5-hl-100 libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 152s libjbig0 libjpeg-turbo8 libjpeg8 libjs-bootstrap libkmlbase1 libkmldom1 152s libkmlengine1 liblapack3 liblcms2-2 liblerc4 libltdl7 libminizip1 152s libmysqlclient21 libnetcdf19 libodbc2 libodbcinst2 libogdi4.1 libopenjp2-7 152s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 152s libpaper1 libpixman-1-0 libpoppler134 libpq5 libproj25 libqhull-r8.0 152s librttopo1 libsharpyuv0 libsm6 libsnappy1v5 libspatialite8 libsuperlu6 152s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtk8.6 libudunits2-0 152s libudunits2-data liburiparser1 libwebp7 libxcb-render0 libxcb-shm0 152s libxerces-c3.2 libxft2 libxrender1 libxss1 libxt6 littler mysql-common 152s node-html5shiv proj-data r-base-core r-cran-askpass r-cran-brio r-cran-callr 152s r-cran-class r-cran-classint r-cran-cli r-cran-covr r-cran-crayon 152s r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest r-cran-e1071 152s r-cran-evaluate r-cran-fansi r-cran-fs r-cran-geosphere r-cran-glue 152s r-cran-httr r-cran-jsonlite r-cran-kernsmooth r-cran-lattice r-cran-lazyeval 152s r-cran-lifecycle r-cran-littler r-cran-lwgeom r-cran-magrittr r-cran-mass 152s r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 152s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-proxy 152s r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rematch2 r-cran-rex r-cran-rlang 152s r-cran-rprojroot r-cran-s2 r-cran-sf r-cran-sp r-cran-sys r-cran-testthat 152s r-cran-tibble r-cran-units r-cran-utf8 r-cran-vctrs r-cran-waldo 152s r-cran-withr r-cran-wk r-cran-yaml unixodbc-common unzip x11-common 152s xdg-utils zip 152s 0 upgraded, 158 newly installed, 0 to remove and 0 not upgraded. 152s Need to get 100 MB/100 MB of archives. 152s After this operation, 240 MB of additional disk space will be used. 152s Get:1 /tmp/autopkgtest.1kKxi5/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [732 B] 152s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 152s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 152s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 152s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1ubuntu1 [180 kB] 152s Get:7 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 152s Get:8 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-data all 3.8.4+dfsg-1 [261 kB] 152s Get:9 http://ftpmaster.internal/ubuntu noble/universe amd64 gdal-plugins amd64 3.8.4+dfsg-1 [24.5 kB] 152s Get:10 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 152s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 152s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 152s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 152s Get:14 http://ftpmaster.internal/ubuntu noble/universe amd64 libarpack2 amd64 3.9.1-1 [105 kB] 152s Get:15 http://ftpmaster.internal/ubuntu noble/universe amd64 libsuperlu6 amd64 6.0.1+dfsg1-1 [184 kB] 152s Get:16 http://ftpmaster.internal/ubuntu noble/universe amd64 libarmadillo12 amd64 1:12.6.7+dfsg-1 [135 kB] 152s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libsnappy1v5 amd64 1.1.10-1 [28.4 kB] 152s Get:18 http://ftpmaster.internal/ubuntu noble/universe amd64 libblosc1 amd64 1.21.5+ds-1 [36.5 kB] 152s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 152s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 152s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 152s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 152s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 152s Get:24 http://ftpmaster.internal/ubuntu noble/universe amd64 libcfitsio10 amd64 4.3.1-1 [528 kB] 152s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 152s Get:26 http://ftpmaster.internal/ubuntu noble/universe amd64 libdav1d7 amd64 1.4.1-1 [604 kB] 152s Get:27 http://ftpmaster.internal/ubuntu noble/universe amd64 libde265-0 amd64 1.0.15-1 [192 kB] 152s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 152s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 libfyba0 amd64 4.1.1-8 [119 kB] 152s Get:30 http://ftpmaster.internal/ubuntu noble/universe amd64 libminizip1 amd64 1:1.3.dfsg-3ubuntu1 [21.8 kB] 152s Get:31 http://ftpmaster.internal/ubuntu noble/universe amd64 libfreexl1 amd64 2.0.0-1 [41.8 kB] 152s Get:32 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos3.12.1 amd64 3.12.1-1 [852 kB] 152s Get:33 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeos-c1v5 amd64 3.12.1-1 [96.1 kB] 152s Get:34 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.3.1-1 [7867 kB] 153s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 153s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 153s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 153s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 153s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 153s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 153s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 153s Get:42 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.3.1-1 [1379 kB] 153s Get:43 http://ftpmaster.internal/ubuntu noble/universe amd64 libgeotiff5 amd64 1.7.1-5 [62.5 kB] 153s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libgif7 amd64 5.2.1-2.5 [34.0 kB] 153s Get:45 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf4-0-alt amd64 4.2.16-3 [282 kB] 153s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 153s Get:47 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1 amd64 1.10.10+repack-3ubuntu1 [1327 kB] 153s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-dav1d amd64 1.17.6-1ubuntu1 [10.9 kB] 153s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif-plugin-libde265 amd64 1.17.6-1ubuntu1 [9024 B] 153s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 libheif1 amd64 1.17.6-1ubuntu1 [325 kB] 153s Get:51 http://ftpmaster.internal/ubuntu noble/universe amd64 liburiparser1 amd64 0.9.7+dfsg-2 [35.9 kB] 153s Get:52 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlbase1 amd64 1.3.0-10 [47.4 kB] 153s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmldom1 amd64 1.3.0-10 [151 kB] 153s Get:54 http://ftpmaster.internal/ubuntu noble/universe amd64 libkmlengine1 amd64 1.3.0-10 [69.3 kB] 153s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 mysql-common all 5.8+1.1.0 [6626 B] 153s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libmysqlclient21 amd64 8.0.36-1 [1283 kB] 153s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100 amd64 1.10.10+repack-3ubuntu1 [56.2 kB] 153s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19 amd64 1:4.9.2-3ubuntu1 [472 kB] 153s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 153s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libodbc2 amd64 2.3.12-1 [159 kB] 153s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 unixodbc-common all 2.3.12-1 [8524 B] 153s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libodbcinst2 amd64 2.3.12-1 [30.9 kB] 153s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 libogdi4.1 amd64 4.1.1+ds-1 [218 kB] 153s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 153s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 153s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libpoppler134 amd64 24.02.0-1ubuntu2 [1112 kB] 153s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libpq5 amd64 16.2-1 [138 kB] 153s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 153s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 librttopo1 amd64 1.1.0-3 [191 kB] 153s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libspatialite8 amd64 5.1.0-1 [2055 kB] 153s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 libxerces-c3.2 amd64 3.2.4+debian-1.1 [1110 kB] 153s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libgdal34 amd64 3.8.4+dfsg-1 [8343 kB] 153s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 153s Get:74 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 153s Get:75 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 153s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 153s Get:77 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 153s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 153s Get:79 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 153s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 153s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.51.0+ds-4 [228 kB] 153s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.51.0+ds-4 [42.1 kB] 153s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.51.0+ds-4 [29.0 kB] 153s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 153s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 153s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 153s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 153s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 153s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 153s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 153s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-data all 2.2.28-7 [19.3 kB] 153s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libudunits2-0 amd64 2.2.28-7 [54.2 kB] 153s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6 amd64 1:1.2.1-1.1 [173 kB] 153s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 153s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 153s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 153s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.2-1build1 [27.0 MB] 153s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 153s Get:99 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 153s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 153s Get:101 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 153s Get:102 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 153s Get:103 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-brio amd64 1.1.4-1 [37.9 kB] 153s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ps amd64 1.7.6-1 [313 kB] 153s Get:105 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 153s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-processx amd64 3.8.3-1 [346 kB] 153s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-callr all 3.7.3-2 [425 kB] 153s Get:108 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 153s Get:109 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-class amd64 7.3-22-2 [88.3 kB] 153s Get:110 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-proxy amd64 0.4-27-1 [182 kB] 153s Get:111 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-e1071 amd64 1.7-14-1 [558 kB] 153s Get:112 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-kernsmooth amd64 2.23-22-1 [91.7 kB] 153s Get:113 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-classint amd64 0.4-10+dfsg-1 [106 kB] 153s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 153s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 153s Get:116 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 153s Get:117 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lazyeval amd64 0.2.2-1build1 [144 kB] 153s Get:118 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rex all 1.2.1-1 [129 kB] 153s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1 [188 kB] 153s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 153s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2 [402 kB] 153s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 153s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 153s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 153s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 153s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-covr amd64 3.6.4+dfsg-1 [303 kB] 153s Get:127 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 153s Get:128 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-desc all 1.4.3-1 [359 kB] 153s Get:129 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-diffobj amd64 0.3.5-1 [1117 kB] 153s Get:130 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 153s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 153s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1 [229 kB] 153s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 153s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 153s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 153s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sp amd64 1:2.1-2+dfsg-1 [1447 kB] 153s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-geosphere amd64 1.5-18-1 [1005 kB] 153s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 153s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 154s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 154s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-units amd64 0.8-5+dfsg-1 [275 kB] 154s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 154s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-wk amd64 0.9.1-1 [1784 kB] 154s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-s2 amd64 1.1.6-1 [1980 kB] 154s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sf amd64 1.0-15+dfsg-1 [3028 kB] 154s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lwgeom amd64 0.2-13-3 [420 kB] 154s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 154s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 154s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 154s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 154s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 154s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rprojroot all 2.0.4-1 [124 kB] 154s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgload all 1.3.4-1 [207 kB] 154s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 154s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 154s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 154s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-waldo all 0.5.2-1build1 [120 kB] 154s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-testthat amd64 3.2.1-1 [1684 kB] 154s Preconfiguring packages ... 154s Fetched 100 MB in 1s (73.7 MB/s) 154s Selecting previously unselected package fonts-dejavu-mono. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71420 files and directories currently installed.) 155s Preparing to unpack .../000-fonts-dejavu-mono_2.37-8_all.deb ... 155s Unpacking fonts-dejavu-mono (2.37-8) ... 155s Selecting previously unselected package fonts-dejavu-core. 155s Preparing to unpack .../001-fonts-dejavu-core_2.37-8_all.deb ... 155s Unpacking fonts-dejavu-core (2.37-8) ... 155s Selecting previously unselected package fontconfig-config. 155s Preparing to unpack .../002-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 155s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 155s Selecting previously unselected package libfontconfig1:amd64. 155s Preparing to unpack .../003-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 155s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 155s Selecting previously unselected package fontconfig. 155s Preparing to unpack .../004-fontconfig_2.15.0-1ubuntu1_amd64.deb ... 155s Unpacking fontconfig (2.15.0-1ubuntu1) ... 155s Selecting previously unselected package fonts-glyphicons-halflings. 155s Preparing to unpack .../005-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 155s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 155s Selecting previously unselected package gdal-data. 155s Preparing to unpack .../006-gdal-data_3.8.4+dfsg-1_all.deb ... 155s Unpacking gdal-data (3.8.4+dfsg-1) ... 155s Selecting previously unselected package gdal-plugins:amd64. 155s Preparing to unpack .../007-gdal-plugins_3.8.4+dfsg-1_amd64.deb ... 155s Unpacking gdal-plugins:amd64 (3.8.4+dfsg-1) ... 155s Selecting previously unselected package libaec0:amd64. 155s Preparing to unpack .../008-libaec0_1.1.2-1_amd64.deb ... 155s Unpacking libaec0:amd64 (1.1.2-1) ... 155s Selecting previously unselected package libblas3:amd64. 155s Preparing to unpack .../009-libblas3_3.12.0-3_amd64.deb ... 155s Unpacking libblas3:amd64 (3.12.0-3) ... 155s Selecting previously unselected package libgfortran5:amd64. 155s Preparing to unpack .../010-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 155s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 155s Selecting previously unselected package liblapack3:amd64. 155s Preparing to unpack .../011-liblapack3_3.12.0-3_amd64.deb ... 155s Unpacking liblapack3:amd64 (3.12.0-3) ... 155s Selecting previously unselected package libarpack2:amd64. 155s Preparing to unpack .../012-libarpack2_3.9.1-1_amd64.deb ... 155s Unpacking libarpack2:amd64 (3.9.1-1) ... 155s Selecting previously unselected package libsuperlu6:amd64. 155s Preparing to unpack .../013-libsuperlu6_6.0.1+dfsg1-1_amd64.deb ... 155s Unpacking libsuperlu6:amd64 (6.0.1+dfsg1-1) ... 155s Selecting previously unselected package libarmadillo12. 155s Preparing to unpack .../014-libarmadillo12_1%3a12.6.7+dfsg-1_amd64.deb ... 155s Unpacking libarmadillo12 (1:12.6.7+dfsg-1) ... 155s Selecting previously unselected package libsnappy1v5:amd64. 155s Preparing to unpack .../015-libsnappy1v5_1.1.10-1_amd64.deb ... 155s Unpacking libsnappy1v5:amd64 (1.1.10-1) ... 155s Selecting previously unselected package libblosc1:amd64. 155s Preparing to unpack .../016-libblosc1_1.21.5+ds-1_amd64.deb ... 155s Unpacking libblosc1:amd64 (1.21.5+ds-1) ... 155s Selecting previously unselected package libpixman-1-0:amd64. 155s Preparing to unpack .../017-libpixman-1-0_0.42.2-1_amd64.deb ... 155s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 155s Selecting previously unselected package libxcb-render0:amd64. 155s Preparing to unpack .../018-libxcb-render0_1.15-1_amd64.deb ... 155s Unpacking libxcb-render0:amd64 (1.15-1) ... 155s Selecting previously unselected package libxcb-shm0:amd64. 155s Preparing to unpack .../019-libxcb-shm0_1.15-1_amd64.deb ... 155s Unpacking libxcb-shm0:amd64 (1.15-1) ... 156s Selecting previously unselected package libxrender1:amd64. 156s Preparing to unpack .../020-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 156s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 156s Selecting previously unselected package libcairo2:amd64. 156s Preparing to unpack .../021-libcairo2_1.18.0-1_amd64.deb ... 156s Unpacking libcairo2:amd64 (1.18.0-1) ... 156s Selecting previously unselected package libcfitsio10:amd64. 156s Preparing to unpack .../022-libcfitsio10_4.3.1-1_amd64.deb ... 156s Unpacking libcfitsio10:amd64 (4.3.1-1) ... 156s Selecting previously unselected package libdatrie1:amd64. 156s Preparing to unpack .../023-libdatrie1_0.2.13-3_amd64.deb ... 156s Unpacking libdatrie1:amd64 (0.2.13-3) ... 156s Selecting previously unselected package libdav1d7:amd64. 156s Preparing to unpack .../024-libdav1d7_1.4.1-1_amd64.deb ... 156s Unpacking libdav1d7:amd64 (1.4.1-1) ... 156s Selecting previously unselected package libde265-0:amd64. 156s Preparing to unpack .../025-libde265-0_1.0.15-1_amd64.deb ... 156s Unpacking libde265-0:amd64 (1.0.15-1) ... 156s Selecting previously unselected package libdeflate0:amd64. 156s Preparing to unpack .../026-libdeflate0_1.19-1_amd64.deb ... 156s Unpacking libdeflate0:amd64 (1.19-1) ... 156s Selecting previously unselected package libfyba0:amd64. 156s Preparing to unpack .../027-libfyba0_4.1.1-8_amd64.deb ... 156s Unpacking libfyba0:amd64 (4.1.1-8) ... 156s Selecting previously unselected package libminizip1:amd64. 156s Preparing to unpack .../028-libminizip1_1%3a1.3.dfsg-3ubuntu1_amd64.deb ... 156s Unpacking libminizip1:amd64 (1:1.3.dfsg-3ubuntu1) ... 156s Selecting previously unselected package libfreexl1:amd64. 156s Preparing to unpack .../029-libfreexl1_2.0.0-1_amd64.deb ... 156s Unpacking libfreexl1:amd64 (2.0.0-1) ... 156s Selecting previously unselected package libgeos3.12.1:amd64. 156s Preparing to unpack .../030-libgeos3.12.1_3.12.1-1_amd64.deb ... 156s Unpacking libgeos3.12.1:amd64 (3.12.1-1) ... 156s Selecting previously unselected package libgeos-c1v5:amd64. 156s Preparing to unpack .../031-libgeos-c1v5_3.12.1-1_amd64.deb ... 156s Unpacking libgeos-c1v5:amd64 (3.12.1-1) ... 156s Selecting previously unselected package proj-data. 156s Preparing to unpack .../032-proj-data_9.3.1-1_all.deb ... 156s Unpacking proj-data (9.3.1-1) ... 156s Selecting previously unselected package libjbig0:amd64. 156s Preparing to unpack .../033-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 156s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 156s Selecting previously unselected package libjpeg-turbo8:amd64. 156s Preparing to unpack .../034-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 156s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 156s Selecting previously unselected package libjpeg8:amd64. 156s Preparing to unpack .../035-libjpeg8_8c-2ubuntu11_amd64.deb ... 156s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 156s Selecting previously unselected package liblerc4:amd64. 156s Preparing to unpack .../036-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 156s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 156s Selecting previously unselected package libsharpyuv0:amd64. 156s Preparing to unpack .../037-libsharpyuv0_1.3.2-0.4_amd64.deb ... 156s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 156s Selecting previously unselected package libwebp7:amd64. 156s Preparing to unpack .../038-libwebp7_1.3.2-0.4_amd64.deb ... 156s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 156s Selecting previously unselected package libtiff6:amd64. 156s Preparing to unpack .../039-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 156s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 156s Selecting previously unselected package libproj25:amd64. 156s 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Selecting previously unselected package libnetcdf19:amd64. 157s Preparing to unpack .../056-libnetcdf19_1%3a4.9.2-3ubuntu1_amd64.deb ... 157s Unpacking libnetcdf19:amd64 (1:4.9.2-3ubuntu1) ... 157s Selecting previously unselected package libltdl7:amd64. 157s Preparing to unpack .../057-libltdl7_2.4.7-7_amd64.deb ... 157s Unpacking libltdl7:amd64 (2.4.7-7) ... 157s Selecting previously unselected package libodbc2:amd64. 157s Preparing to unpack .../058-libodbc2_2.3.12-1_amd64.deb ... 157s Unpacking libodbc2:amd64 (2.3.12-1) ... 157s Selecting previously unselected package unixodbc-common. 157s Preparing to unpack .../059-unixodbc-common_2.3.12-1_all.deb ... 157s Unpacking unixodbc-common (2.3.12-1) ... 157s Selecting previously unselected package libodbcinst2:amd64. 157s Preparing to unpack .../060-libodbcinst2_2.3.12-1_amd64.deb ... 157s Unpacking libodbcinst2:amd64 (2.3.12-1) ... 157s Selecting previously unselected package libogdi4.1. 157s Preparing to unpack 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Selecting previously unselected package librttopo1:amd64. 157s Preparing to unpack .../067-librttopo1_1.1.0-3_amd64.deb ... 157s Unpacking librttopo1:amd64 (1.1.0-3) ... 157s Selecting previously unselected package libspatialite8:amd64. 157s Preparing to unpack .../068-libspatialite8_5.1.0-1_amd64.deb ... 157s Unpacking libspatialite8:amd64 (5.1.0-1) ... 157s Selecting previously unselected package libxerces-c3.2:amd64. 157s Preparing to unpack .../069-libxerces-c3.2_3.2.4+debian-1.1_amd64.deb ... 157s Unpacking libxerces-c3.2:amd64 (3.2.4+debian-1.1) ... 157s Selecting previously unselected package libgdal34:amd64. 157s Preparing to unpack .../070-libgdal34_3.8.4+dfsg-1_amd64.deb ... 157s Unpacking libgdal34:amd64 (3.8.4+dfsg-1) ... 157s Selecting previously unselected package libgomp1:amd64. 157s Preparing to unpack .../071-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 157s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libgraphite2-3:amd64. 157s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_amd64.deb ... 157s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 157s Selecting previously unselected package libharfbuzz0b:amd64. 157s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_amd64.deb ... 157s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 157s Selecting previously unselected package x11-common. 157s Preparing to unpack .../074-x11-common_1%3a7.7+23ubuntu2_all.deb ... 157s Unpacking x11-common (1:7.7+23ubuntu2) ... 157s Selecting previously unselected package libice6:amd64. 158s Preparing to unpack .../075-libice6_2%3a1.0.10-1build2_amd64.deb ... 158s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 158s Selecting previously unselected package libjs-bootstrap. 158s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 158s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 158s Selecting previously unselected package libthai-data. 158s Preparing to unpack .../077-libthai-data_0.1.29-2_all.deb 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158s Selecting previously unselected package libpaper-utils. 158s Preparing to unpack .../083-libpaper-utils_1.1.29_amd64.deb ... 158s Unpacking libpaper-utils (1.1.29) ... 158s Selecting previously unselected package libsm6:amd64. 158s Preparing to unpack .../084-libsm6_2%3a1.2.3-1build2_amd64.deb ... 158s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 158s Selecting previously unselected package libtcl8.6:amd64. 158s Preparing to unpack .../085-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 158s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 158s Selecting previously unselected package libxft2:amd64. 158s Preparing to unpack .../086-libxft2_2.3.6-1_amd64.deb ... 158s Unpacking libxft2:amd64 (2.3.6-1) ... 158s Selecting previously unselected package libxss1:amd64. 158s Preparing to unpack .../087-libxss1_1%3a1.2.3-1build2_amd64.deb ... 158s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 158s Selecting previously unselected package libtk8.6:amd64. 158s Preparing to unpack .../088-libtk8.6_8.6.14-1_amd64.deb ... 158s Unpacking libtk8.6:amd64 (8.6.14-1) ... 158s Selecting previously unselected package libudunits2-data. 158s Preparing to unpack .../089-libudunits2-data_2.2.28-7_all.deb ... 158s Unpacking libudunits2-data (2.2.28-7) ... 158s Selecting previously unselected package libudunits2-0. 158s Preparing to unpack .../090-libudunits2-0_2.2.28-7_amd64.deb ... 158s Unpacking libudunits2-0 (2.2.28-7) ... 158s Selecting previously unselected package libxt6:amd64. 158s Preparing to unpack .../091-libxt6_1%3a1.2.1-1.1_amd64.deb ... 158s Unpacking libxt6:amd64 (1:1.2.1-1.1) ... 158s Selecting previously unselected package zip. 158s Preparing to unpack .../092-zip_3.0-13_amd64.deb ... 158s Unpacking zip (3.0-13) ... 158s Selecting previously unselected package unzip. 158s Preparing to unpack .../093-unzip_6.0-28ubuntu3_amd64.deb ... 158s Unpacking unzip (6.0-28ubuntu3) ... 158s Selecting previously unselected package xdg-utils. 158s Preparing to unpack .../094-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 158s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 158s Selecting previously unselected package r-base-core. 158s Preparing to unpack .../095-r-base-core_4.3.2-1build1_amd64.deb ... 158s Unpacking r-base-core (4.3.2-1build1) ... 158s Selecting previously unselected package r-cran-littler. 158s Preparing to unpack .../096-r-cran-littler_0.3.19-1_amd64.deb ... 158s Unpacking r-cran-littler (0.3.19-1) ... 158s Selecting previously unselected package littler. 159s Preparing to unpack .../097-littler_0.3.19-1_all.deb ... 159s Unpacking littler (0.3.19-1) ... 159s Selecting previously unselected package node-html5shiv. 159s Preparing to unpack .../098-node-html5shiv_3.7.3+dfsg-5_all.deb ... 159s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 159s Selecting previously unselected package r-cran-sys. 159s Preparing to unpack .../099-r-cran-sys_3.4.2-1_amd64.deb ... 159s Unpacking r-cran-sys (3.4.2-1) ... 159s Selecting previously unselected package r-cran-askpass. 159s Preparing to unpack .../100-r-cran-askpass_1.2.0-1_amd64.deb ... 159s Unpacking r-cran-askpass (1.2.0-1) ... 159s Selecting previously unselected package r-cran-brio. 159s Preparing to unpack .../101-r-cran-brio_1.1.4-1_amd64.deb ... 159s Unpacking r-cran-brio (1.1.4-1) ... 159s Selecting previously unselected package r-cran-ps. 159s Preparing to unpack .../102-r-cran-ps_1.7.6-1_amd64.deb ... 159s Unpacking r-cran-ps (1.7.6-1) ... 159s Selecting previously unselected package r-cran-r6. 159s Preparing to unpack .../103-r-cran-r6_2.5.1-1_all.deb ... 159s Unpacking r-cran-r6 (2.5.1-1) ... 159s Selecting previously unselected package r-cran-processx. 159s Preparing to unpack .../104-r-cran-processx_3.8.3-1_amd64.deb ... 159s Unpacking r-cran-processx (3.8.3-1) ... 159s Selecting previously unselected package r-cran-callr. 159s Preparing to unpack .../105-r-cran-callr_3.7.3-2_all.deb ... 159s Unpacking r-cran-callr (3.7.3-2) ... 159s Selecting previously unselected package r-cran-mass. 159s Preparing to unpack .../106-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 159s Unpacking r-cran-mass (7.3-60.0.1-1) ... 159s Selecting previously unselected package r-cran-class. 159s Preparing to unpack .../107-r-cran-class_7.3-22-2_amd64.deb ... 159s Unpacking r-cran-class (7.3-22-2) ... 159s Selecting previously unselected package r-cran-proxy. 159s Preparing to unpack .../108-r-cran-proxy_0.4-27-1_amd64.deb ... 159s Unpacking r-cran-proxy (0.4-27-1) ... 159s Selecting previously unselected package r-cran-e1071. 159s Preparing to unpack .../109-r-cran-e1071_1.7-14-1_amd64.deb ... 159s Unpacking r-cran-e1071 (1.7-14-1) ... 159s Selecting previously unselected package r-cran-kernsmooth. 159s Preparing to unpack .../110-r-cran-kernsmooth_2.23-22-1_amd64.deb ... 159s Unpacking r-cran-kernsmooth (2.23-22-1) ... 159s Selecting previously unselected package r-cran-classint. 159s Preparing to unpack .../111-r-cran-classint_0.4-10+dfsg-1_amd64.deb ... 159s Unpacking r-cran-classint (0.4-10+dfsg-1) ... 159s Selecting previously unselected package r-cran-cli. 159s Preparing to unpack .../112-r-cran-cli_3.6.2-1_amd64.deb ... 159s Unpacking r-cran-cli (3.6.2-1) ... 159s Selecting previously unselected package r-cran-digest. 159s Preparing to unpack .../113-r-cran-digest_0.6.34-1_amd64.deb ... 159s Unpacking r-cran-digest (0.6.34-1) ... 159s Selecting previously unselected package r-cran-jsonlite. 159s Preparing to unpack .../114-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 159s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 159s Selecting previously unselected package r-cran-lazyeval. 159s Preparing to unpack .../115-r-cran-lazyeval_0.2.2-1build1_amd64.deb ... 159s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 159s Selecting previously unselected package r-cran-rex. 159s Preparing to unpack .../116-r-cran-rex_1.2.1-1_all.deb ... 159s Unpacking r-cran-rex (1.2.1-1) ... 159s Selecting previously unselected package r-cran-curl. 159s Preparing to unpack .../117-r-cran-curl_5.2.0+dfsg-1_amd64.deb ... 159s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 159s Selecting previously unselected package r-cran-mime. 159s Preparing to unpack .../118-r-cran-mime_0.12-1_amd64.deb ... 159s Unpacking r-cran-mime (0.12-1) ... 159s Selecting previously unselected package r-cran-openssl. 159s Preparing to unpack .../119-r-cran-openssl_2.1.1+dfsg-2_amd64.deb ... 159s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 159s Selecting previously unselected package r-cran-httr. 159s Preparing to unpack .../120-r-cran-httr_1.4.7+dfsg-1_all.deb ... 159s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 159s Selecting previously unselected package r-cran-crayon. 159s Preparing to unpack .../121-r-cran-crayon_1.5.2-1_all.deb ... 159s Unpacking r-cran-crayon (1.5.2-1) ... 159s Selecting previously unselected package r-cran-withr. 159s Preparing to unpack .../122-r-cran-withr_2.5.0-1_all.deb ... 159s Unpacking r-cran-withr (2.5.0-1) ... 159s Selecting previously unselected package 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R Foundation for Statistical Computing 172s Platform: x86_64-pc-linux-gnu (64-bit) 172s 172s R is free software and comes with ABSOLUTELY NO WARRANTY. 172s You are welcome to redistribute it under certain conditions. 172s Type 'license()' or 'licence()' for distribution details. 172s 172s R is a collaborative project with many contributors. 172s Type 'contributors()' for more information and 172s 'citation()' on how to cite R or R packages in publications. 172s 172s Type 'demo()' for some demos, 'help()' for on-line help, or 172s 'help.start()' for an HTML browser interface to help. 172s Type 'q()' to quit R. 172s 173s > suppressPackageStartupMessages(library(sf)) 173s > suppressPackageStartupMessages(library(lwgeom)) 173s > p = st_sfc(st_point(c(7,52)), st_point(c(8,53)), crs = 4326) 173s > st_geod_azimuth(p) 173s 0.5410385 [rad] 173s > 173s BEGIN TEST dist.R 173s 173s R version 4.3.2 (2023-10-31) -- "Eye Holes" 173s Copyright (C) 2023 The R Foundation for Statistical Computing 173s Platform: x86_64-pc-linux-gnu (64-bit) 173s 173s R is free software and comes with ABSOLUTELY NO WARRANTY. 173s You are welcome to redistribute it under certain conditions. 173s Type 'license()' or 'licence()' for distribution details. 173s 173s R is a collaborative project with many contributors. 173s Type 'contributors()' for more information and 173s 'citation()' on how to cite R or R packages in publications. 173s 173s Type 'demo()' for some demos, 'help()' for on-line help, or 173s 'help.start()' for an HTML browser interface to help. 173s Type 'q()' to quit R. 173s 173s > suppressPackageStartupMessages(library(sf)) 173s > library(sp) 174s > suppressPackageStartupMessages(library(units)) 174s > library(geosphere) 174s > 174s > x = st_sfc( 174s + st_point(c(0,0)), 174s + st_point(c(1,0)), 174s + st_point(c(2,0)), 174s + st_point(c(3,0)), 174s + crs = 4326 174s + ) 174s > 174s > y = st_sfc( 174s + st_point(c(0,10)), 174s + st_point(c(1,0)), 174s + st_point(c(2,0)), 174s + st_point(c(3,0)), 174s + st_point(c(4,0)), 174s + crs = 4326 174s + ) 174s > 174s > st_crs(y) = 4326 174s > st_crs(x) = 4326 174s Spherical geometry (s2) switched off 174s > sf_use_s2(FALSE) 174s > (d.sf = st_distance(x, y)) 174s Units: [m] 174s [,1] [,2] [,3] [,4] [,5] 174s [1,] 1105855 111319.5 222639.0 333958.5 445278.0 174s [2,] 1111387 0.0 111319.5 222639.0 333958.5 174s [3,] 1127822 111319.5 0.0 111319.5 222639.0 174s [4,] 1154693 222639.0 111319.5 0.0 111319.5 174s > 174s BEGIN TEST geod.R 174s 174s R version 4.3.2 (2023-10-31) -- "Eye Holes" 174s Copyright (C) 2023 The R Foundation for Statistical Computing 174s Platform: x86_64-pc-linux-gnu (64-bit) 174s 174s R is free software and comes with ABSOLUTELY NO WARRANTY. 174s You are welcome to redistribute it under certain conditions. 174s Type 'license()' or 'licence()' for distribution details. 174s 174s R is a collaborative project with many contributors. 174s Type 'contributors()' for more information and 174s 'citation()' on how to cite R or R packages in publications. 174s 174s Type 'demo()' for some demos, 'help()' for on-line help, or 174s 'help.start()' for an HTML browser interface to help. 174s Type 'q()' to quit R. 174s 174s > ### Name: lw_geodetic 174s > ### Title: geodetic length, area, and predicates 174s > ### Aliases: lw_geodetic st_geod_area lw_geodetic st_geod_length 174s > ### lw_geodetic st_geod_segmentize lw_geodetic st_geod_covers 174s > 174s > ### ** Examples 174s > 174s > suppressPackageStartupMessages(library(sf)) 174s > suppressPackageStartupMessages(library(lwgeom)) 174s > suppressPackageStartupMessages(library(units)) 174s > nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) 174s > st_geod_area(nc[1:3,]) 174s Units: [m^2] 174s [1] 1137388604 611077263 1423489919 174s > # st_area(nc[1:3,]) 174s > l = st_sfc(st_linestring(rbind(c(7,52), c(8,53))), crs = 4326) 174s > st_geod_length(l) 174s 130359.3 [m] 174s > pol = st_polygon(list(rbind(c(0,0), c(0,60), c(60,60), c(0,0)))) 174s > x = st_sfc(pol, crs = 4326) 174s > seg = st_geod_segmentize(x[1], set_units(10, km)) 174s > plot(seg, graticule = TRUE, axes = TRUE) 174s > pole = st_polygon(list(rbind(c(0,80), c(120,80), c(240,80), c(0,80)))) 174s > pt = st_point(c(0,90)) 174s > x = st_sfc(pole, pt, crs = 4326) 174s > st_geod_covers(x[c(1,1,1)], x[c(2,2,2,2)]) 174s Sparse geometry binary predicate list of length 3, where the predicate 174s was `covers' 174s 1: 1, 2, 3, 4 174s 2: 1, 2, 3, 4 174s 3: 1, 2, 3, 4 174s > st_geod_covered_by(x[c(2,2)], x[c(1,1,1)]) 174s Sparse geometry binary predicate list of length 2, where the predicate 174s was `covered_by' 174s 1: 1, 2, 3 174s 2: 1, 2, 3 174s > st_geod_covers(x[c(1,1,1)], x[c(2,2,2,2)], sparse = FALSE) 174s [,1] [,2] [,3] [,4] 174s [1,] TRUE TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE TRUE 174s [3,] TRUE TRUE TRUE TRUE 174s > st_geod_covered_by(x[c(2,2)], x[c(1,1,1)], sparse = FALSE) 174s [,1] [,2] [,3] 174s [1,] TRUE TRUE TRUE 174s [2,] TRUE TRUE TRUE 174s > 174s > # box crossing the dateline: 174s > #box = st_polygon(list(rbind(c(179.5,0), c(179.5,1), c(-179.5,1), c(-179.5,0), c(179.5,0)))) 174s > box = st_polygon(list(rbind(c(179.5,0.1), c(179.5,1), c(-179.5,1), c(-179.5,0.1), c(179.5,0.1)))) 174s > b = st_sfc(box, crs = 4326) 174s > units::set_units(st_geod_area(b), km^2) # approx 111^2 174s 11077.84 [km^2] 174s > 174s > pt = st_point(c(30, 70)) 174s > x = st_sfc(pole, pt, pt, crs = 4326) 174s > st_geod_distance(x, x) 174s Units: [m] 174s [,1] [,2] [,3] 174s [1,] 0 1378923 1378923 174s [2,] 1378923 0 0 174s [3,] 1378923 0 0 174s > st_geod_distance(x, x, sparse = TRUE) 174s Sparse geometry binary predicate list of length 3, where the predicate 174s was `st_is_within_distance' 174s 1: 1 174s 2: 2, 3 174s 3: 2, 3 174s > st_geod_distance(x, x, tolerance = 1, sparse = TRUE) 174s Sparse geometry binary predicate list of length 3, where the predicate 174s was `st_is_within_distance' 174s 1: 1 174s 2: 2, 3 174s 3: 2, 3 174s > 174s BEGIN TEST perimeter.R 175s 175s R version 4.3.2 (2023-10-31) -- "Eye Holes" 175s Copyright (C) 2023 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu (64-bit) 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > suppressPackageStartupMessages(library(lwgeom)) 175s > suppressPackageStartupMessages(library(sf)) 175s > nc = st_read(system.file("gpkg/nc.gpkg", package="sf"), quiet = TRUE) 175s > nc = st_transform(nc, 3857) 175s > st_perimeter(nc)[1:5] 175s Units: [m] 175s [1] 176214.9 149265.4 199586.8 375137.8 263512.6 175s > st_perimeter_2d(nc)[1:5] 175s Units: [m] 175s [1] 176214.9 149265.4 199586.8 375137.8 263512.6 175s > 175s BEGIN TEST testthat.R 175s 175s R version 4.3.2 (2023-10-31) -- "Eye Holes" 175s Copyright (C) 2023 The R Foundation for Statistical Computing 175s Platform: x86_64-pc-linux-gnu (64-bit) 175s 175s R is free software and comes with ABSOLUTELY NO WARRANTY. 175s You are welcome to redistribute it under certain conditions. 175s Type 'license()' or 'licence()' for distribution details. 175s 175s R is a collaborative project with many contributors. 175s Type 'contributors()' for more information and 175s 'citation()' on how to cite R or R packages in publications. 175s 175s Type 'demo()' for some demos, 'help()' for on-line help, or 175s 'help.start()' for an HTML browser interface to help. 175s Type 'q()' to quit R. 175s 175s > library(testthat) 175s > suppressPackageStartupMessages(library(sf)) 176s > suppressPackageStartupMessages(library(lwgeom)) 176s > 176s > test_check("lwgeom") 177s [ FAIL 0 | WARN 0 | SKIP 0 | PASS 61 ] 177s > 177s BEGIN TEST twkb.R 177s 177s R version 4.3.2 (2023-10-31) -- "Eye Holes" 177s Copyright (C) 2023 The R Foundation for Statistical Computing 177s Platform: x86_64-pc-linux-gnu (64-bit) 177s 177s R is free software and comes with ABSOLUTELY NO WARRANTY. 177s You are welcome to redistribute it under certain conditions. 177s Type 'license()' or 'licence()' for distribution details. 177s 177s R is a collaborative project with many contributors. 177s Type 'contributors()' for more information and 177s 'citation()' on how to cite R or R packages in publications. 177s 177s Type 'demo()' for some demos, 'help()' for on-line help, or 177s 'help.start()' for an HTML browser interface to help. 177s Type 'q()' to quit R. 177s 177s > l = structure(list(as.raw(c(0x02, 0x00, 0x02, 0x02, 0x02, 0x08, 0x08))), class = "TWKB") 177s > suppressPackageStartupMessages(library(sf)) 177s > suppressPackageStartupMessages(library(lwgeom)) 177s > st_as_sfc(l) 177s Geometry set for 1 feature 177s Geometry type: LINESTRING 177s Dimension: XY 177s Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 5 177s CRS: NA 177s > st_as_sfc(structure(list(l[[1]], l[[1]]), class = "TWKB")) 177s Geometry set for 2 features 177s Geometry type: LINESTRING 177s Dimension: XY 177s Bounding box: xmin: 1 ymin: 1 xmax: 5 ymax: 5 177s CRS: NA 177s > 177s LINESTRING (1 1, 5 5) 177s LINESTRING (1 1, 5 5) 177s LINESTRING (1 1, 5 5) 177s autopkgtest [22:27:07]: test run-unit-test: -----------------------] 178s autopkgtest [22:27:08]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 178s run-unit-test PASS 178s autopkgtest [22:27:08]: test pkg-r-autopkgtest: preparing testbed 178s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 179s The following additional packages will be installed: 179s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 179s dctrl-tools g++ g++-13 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc 179s gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 179s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools libasan8 179s libatomic1 libblas-dev libbz2-dev libc-dev-bin libc6-dev libcc1-0 179s libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 libicu-dev libisl23 179s libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblsan0 179s liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 libpcre2-32-0 libpcre2-dev 179s libpcre2-posix3 libpkgconf3 libpng-dev libquadmath0 libreadline-dev 179s libstdc++-13-dev libtsan2 libubsan1 linux-libc-dev pkg-config 179s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev rpcsvc-proto zlib1g-dev 179s Suggested packages: 179s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 179s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 179s gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu gfortran-multilib 179s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev 179s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 179s libstdc++-13-doc texlive-base texlive-latex-base texlive-plain-generic 179s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 179s texlive-latex-recommended texlive-latex-extra texinfo 179s Recommended packages: 179s bzip2-doc manpages manpages-dev libc-devtools libpng-tools 179s The following NEW packages will be installed: 179s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu 179s cpp-x86-64-linux-gnu dctrl-tools g++ g++-13 g++-13-x86-64-linux-gnu 179s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu 179s gfortran gfortran-13 gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu 179s icu-devtools libasan8 libatomic1 libblas-dev libbz2-dev libc-dev-bin 179s libc6-dev libcc1-0 libcrypt-dev libgcc-13-dev libgfortran-13-dev libhwasan0 179s libicu-dev libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev 179s liblapack-dev liblsan0 liblzma-dev libmpc3 libncurses-dev libpcre2-16-0 179s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpkgconf3 libpng-dev 179s libquadmath0 libreadline-dev libstdc++-13-dev libtsan2 libubsan1 179s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-dev 179s rpcsvc-proto zlib1g-dev 179s 0 upgraded, 61 newly installed, 0 to remove and 0 not upgraded. 179s Need to get 99.5 MB/99.5 MB of archives. 179s After this operation, 374 MB of additional disk space will be used. 179s Get:1 /tmp/autopkgtest.1kKxi5/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [744 B] 179s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-dev-bin amd64 2.39-0ubuntu6 [20.4 kB] 179s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 linux-libc-dev amd64 6.8.0-11.11 [1595 kB] 179s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libcrypt-dev amd64 1:4.4.36-4 [128 kB] 179s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 rpcsvc-proto amd64 1.4.2-0ubuntu6 [68.5 kB] 179s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libc6-dev amd64 2.39-0ubuntu6 [2126 kB] 180s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 180s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 180s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.2 MB] 180s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-17ubuntu2 [1030 B] 180s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 180s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 180s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240303-1ubuntu1 [47.7 kB] 180s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240303-1ubuntu1 [29.1 kB] 180s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB] 180s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240303-1ubuntu1 [3026 kB] 180s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240303-1ubuntu1 [1310 kB] 180s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240303-1ubuntu1 [2732 kB] 180s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240303-1ubuntu1 [1172 kB] 180s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240303-1ubuntu1 [1629 kB] 180s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240303-1ubuntu1 [155 kB] 180s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-17ubuntu2 [2687 kB] 180s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [21.9 MB] 180s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-17ubuntu2 [477 kB] 180s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 180s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 180s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-17ubuntu2 [2340 kB] 180s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [12.5 MB] 180s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-17ubuntu2 [14.5 kB] 180s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 180s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 180s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 180s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 180s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-17ubuntu2 [942 kB] 180s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-17ubuntu2 [11.6 MB] 180s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-17ubuntu2 [10.3 kB] 180s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 180s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 180s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 180s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 180s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 180s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 180s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 180s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 180s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 180s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 180s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 180s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 180s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 180s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 180s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 180s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 180s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3ubuntu1 [896 kB] 180s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-1 [264 kB] 180s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-3 [167 kB] 180s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 180s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 180s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 180s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.4.5-0.3 [205 kB] 180s Get:60 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.2-1build1 [4336 B] 180s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 181s Fetched 99.5 MB in 1s (135 MB/s) 181s Selecting previously unselected package libc-dev-bin. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 80312 files and directories currently installed.) 181s Preparing to unpack .../00-libc-dev-bin_2.39-0ubuntu6_amd64.deb ... 181s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 181s Selecting previously unselected package linux-libc-dev:amd64. 181s Preparing to unpack .../01-linux-libc-dev_6.8.0-11.11_amd64.deb ... 181s Unpacking linux-libc-dev:amd64 (6.8.0-11.11) ... 181s Selecting previously unselected package libcrypt-dev:amd64. 181s Preparing to unpack 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(13.2.0-17ubuntu2) ... 181s Selecting previously unselected package cpp-13. 181s Preparing to unpack .../08-cpp-13_13.2.0-17ubuntu2_amd64.deb ... 181s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 181s Selecting previously unselected package cpp-x86-64-linux-gnu. 181s Preparing to unpack .../09-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 181s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 181s Selecting previously unselected package cpp. 181s Preparing to unpack .../10-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 181s Unpacking cpp (4:13.2.0-7ubuntu1) ... 181s Selecting previously unselected package libcc1-0:amd64. 181s Preparing to unpack .../11-libcc1-0_14-20240303-1ubuntu1_amd64.deb ... 181s Unpacking libcc1-0:amd64 (14-20240303-1ubuntu1) ... 181s Selecting previously unselected package libitm1:amd64. 181s Preparing to unpack .../12-libitm1_14-20240303-1ubuntu1_amd64.deb ... 181s Unpacking libitm1:amd64 (14-20240303-1ubuntu1) ... 181s Selecting previously unselected package libatomic1:amd64. 181s Preparing to unpack .../13-libatomic1_14-20240303-1ubuntu1_amd64.deb ... 181s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ... 181s Selecting previously unselected package libasan8:amd64. 182s Preparing to unpack .../14-libasan8_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libasan8:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package liblsan0:amd64. 182s Preparing to unpack .../15-liblsan0_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking liblsan0:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libtsan2:amd64. 182s Preparing to unpack .../16-libtsan2_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libtsan2:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libubsan1:amd64. 182s Preparing to unpack .../17-libubsan1_14-20240303-1ubuntu1_amd64.deb ... 182s Unpacking libubsan1:amd64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libhwasan0:amd64. 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.../33-gfortran-13-x86-64-linux-gnu_13.2.0-17ubuntu2_amd64.deb ... 183s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-17ubuntu2) ... 183s Selecting previously unselected package gfortran-13. 183s Preparing to unpack .../34-gfortran-13_13.2.0-17ubuntu2_amd64.deb ... 183s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 183s Selecting previously unselected package gfortran-x86-64-linux-gnu. 183s Preparing to unpack .../35-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 183s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 183s Selecting previously unselected package gfortran. 183s Preparing to unpack .../36-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 183s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 183s Selecting previously unselected package icu-devtools. 183s Preparing to unpack .../37-icu-devtools_74.2-1ubuntu1_amd64.deb ... 183s Unpacking icu-devtools (74.2-1ubuntu1) ... 183s Selecting previously unselected package libblas-dev:amd64. 183s Preparing to unpack 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update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 185s Setting up g++ (4:13.2.0-7ubuntu1) ... 185s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 185s Setting up build-essential (12.10ubuntu1) ... 185s Setting up r-base-dev (4.3.2-1build1) ... 185s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 185s Setting up autopkgtest-satdep (0) ... 185s Processing triggers for man-db (2.12.0-3) ... 185s Processing triggers for install-info (7.1-3) ... 185s Processing triggers for libc-bin (2.39-0ubuntu6) ... 187s (Reading database ... 83918 files and directories currently installed.) 187s Removing autopkgtest-satdep (0) ... 188s autopkgtest [22:27:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 188s autopkgtest [22:27:18]: test pkg-r-autopkgtest: [----------------------- 188s Test: Try to load the R library lwgeom 188s 188s R version 4.3.2 (2023-10-31) -- "Eye Holes" 188s Copyright (C) 2023 The R Foundation for Statistical Computing 188s Platform: x86_64-pc-linux-gnu (64-bit) 188s 188s R is free software and comes with ABSOLUTELY NO WARRANTY. 188s You are welcome to redistribute it under certain conditions. 188s Type 'license()' or 'licence()' for distribution details. 188s 188s R is a collaborative project with many contributors. 188s Type 'contributors()' for more information and 188s 'citation()' on how to cite R or R packages in publications. 188s 188s Type 'demo()' for some demos, 'help()' for on-line help, or 188s 'help.start()' for an HTML browser interface to help. 188s Type 'q()' to quit R. 188s 188s > library('lwgeom') 188s Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.12.1, PROJ 9.3.1 188s > 188s > 188s Other tests are currently unsupported! 188s They will be progressively added. 189s autopkgtest [22:27:19]: test pkg-r-autopkgtest: -----------------------] 189s autopkgtest [22:27:19]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 189s pkg-r-autopkgtest PASS 189s autopkgtest [22:27:19]: @@@@@@@@@@@@@@@@@@@@ summary 189s run-unit-test PASS 189s pkg-r-autopkgtest PASS 218s Creating nova instance adt-noble-amd64-r-cran-lwgeom-20240325-222410-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-amd64-server-20240325.img (UUID ba43860b-557a-4db2-b3f0-378a99bca08c)...