0s autopkgtest [16:40:47]: starting date and time: 2024-04-09 16:40:47+0000 0s autopkgtest [16:40:47]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [16:40:47]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.nblf2blv/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:curl --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu10 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-5.secgroup --name adt-noble-amd64-r-bioc-rsamtools-20240409-164047-juju-7f2275-prod-proposed-migration-environment-3-5ad83f7a-0b54-4699-ac63-1b6d412b8b26 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 301s autopkgtest [16:45:48]: testbed dpkg architecture: amd64 301s autopkgtest [16:45:48]: testbed apt version: 2.7.14build2 301s autopkgtest [16:45:48]: @@@@@@@@@@@@@@@@@@@@ test bed setup 301s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 302s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [7716 B] 302s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [748 kB] 302s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [338 kB] 302s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [4796 B] 302s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [353 kB] 302s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [266 kB] 302s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 302s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [3680 B] 302s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [20.0 kB] 302s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 302s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [906 kB] 302s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [419 kB] 302s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 302s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [1076 B] 302s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [4760 B] 302s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 307s Fetched 3202 kB in 1s (5659 kB/s) 307s Reading package lists... 308s Reading package lists... 308s Building dependency tree... 308s Reading state information... 309s Calculating upgrade... 309s The following packages will be upgraded: 309s curl libcurl3t64-gnutls libcurl4t64 309s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 309s Need to get 900 kB of archives. 309s After this operation, 0 B of additional disk space will be used. 309s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 curl amd64 8.5.0-2ubuntu10 [227 kB] 309s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10 [340 kB] 309s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl3t64-gnutls amd64 8.5.0-2ubuntu10 [333 kB] 309s Fetched 900 kB in 0s (18.3 MB/s) 309s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73681 files and directories currently installed.) 309s Preparing to unpack .../curl_8.5.0-2ubuntu10_amd64.deb ... 309s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 309s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu10_amd64.deb ... 309s Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 309s Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu10_amd64.deb ... 309s Unpacking libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 310s Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10) ... 310s Setting up libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10) ... 310s Setting up curl (8.5.0-2ubuntu10) ... 310s Processing triggers for man-db (2.12.0-4build1) ... 310s Processing triggers for libc-bin (2.39-0ubuntu8) ... 310s Reading package lists... 310s Building dependency tree... 310s Reading state information... 311s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 311s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 311s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 311s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 311s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 312s Reading package lists... 312s Reading package lists... 312s Building dependency tree... 312s Reading state information... 313s Calculating upgrade... 313s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 313s Reading package lists... 313s Building dependency tree... 313s Reading state information... 313s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 314s autopkgtest [16:46:01]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP PREEMPT_DYNAMIC Thu Apr 4 22:30:32 UTC 2024 314s autopkgtest [16:46:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 321s Get:1 http://ftpmaster.internal/ubuntu noble-updates/universe r-bioc-rsamtools 2.18.0+dfsg-1 (dsc) [2354 B] 321s Get:2 http://ftpmaster.internal/ubuntu noble-updates/universe r-bioc-rsamtools 2.18.0+dfsg-1 (tar) [2463 kB] 321s Get:3 http://ftpmaster.internal/ubuntu noble-updates/universe r-bioc-rsamtools 2.18.0+dfsg-1 (diff) [6804 B] 321s gpgv: Signature made Thu Nov 30 10:32:59 2023 UTC 321s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 321s gpgv: issuer "tillea@rki.de" 321s gpgv: Can't check signature: No public key 321s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1.dsc: no acceptable signature found 321s autopkgtest [16:46:02]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1 321s autopkgtest [16:46:08]: build not needed 402s autopkgtest [16:47:29]: test pkg-r-autopkgtest: preparing testbed 406s Reading package lists... 406s Building dependency tree... 406s Reading state information... 407s Starting pkgProblemResolver with broken count: 0 407s Starting 2 pkgProblemResolver with broken count: 0 407s Done 410s The following additional packages will be installed: 410s build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu 410s dctrl-tools fontconfig fonts-font-awesome fonts-glyphicons-halflings 410s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-x86-64-linux-gnu 410s g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base gcc-13-x86-64-linux-gnu 410s gcc-x86-64-linux-gnu gfortran gfortran-13 gfortran-13-x86-64-linux-gnu 410s gfortran-x86-64-linux-gnu icu-devtools javascript-common libasan8 libatomic1 410s libbibtex-parser-perl libblas-dev libblas3 libboost-dev libboost1.83-dev 410s libbz2-dev libcairo2 libcc1-0 libdatrie1 libgcc-13-dev libgfortran-13-dev 410s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 410s libicu-dev libio-string-perl libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev 410s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 410s libjs-highlight.js libjs-jquery libjs-jquery-datatables 410s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 410s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 410s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 410s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblsan0 410s liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 410s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 410s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 410s libpng-dev libpotrace0 libptexenc1 libquadmath0 libreadline-dev libsm6 410s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 410s libthai0 libtk8.6 libtsan2 libubsan1 libxaw7 libxcb-render0 libxcb-shm0 410s libxft2 libxi6 libxmu6 libxrender1 libxss1 libxt6t64 libzzip-0-13t64 littler 410s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 410s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 410s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 410s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 410s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 410s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 410s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 410s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 410s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 410s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 410s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 410s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 410s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 410s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 410s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 410s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 410s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 410s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 410s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 410s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 410s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 410s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 410s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 410s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 410s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 410s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 410s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 410s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 410s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 410s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml t1utils 410s tex-common texlive-base texlive-bibtex-extra texlive-binaries 410s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 410s Suggested packages: 410s cpp-doc gcc-13-locales cpp-13-doc debtags g++-multilib g++-13-multilib 410s gcc-13-doc gcc-multilib manpages-dev autoconf automake libtool flex bison 410s gdb gcc-doc gcc-13-multilib gdb-x86-64-linux-gnu gfortran-multilib 410s gfortran-doc gfortran-13-multilib gfortran-13-doc libcoarrays-dev apache2 410s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 410s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 410s libboost-context1.83-dev libboost-contract1.83-dev 410s libboost-coroutine1.83-dev libboost-date-time1.83-dev 410s libboost-exception1.83-dev libboost-fiber1.83-dev 410s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 410s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 410s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 410s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 410s libboost-numpy1.83-dev libboost-program-options1.83-dev 410s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 410s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 410s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 410s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 410s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 410s icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 410s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 410s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 410s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 410s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 410s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 410s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 410s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 410s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 410s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 410s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 410s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 410s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 410s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 410s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 410s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 410s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 410s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 410s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 410s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 410s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 410s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 410s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 410s Recommended packages: 410s bzip2-doc node-jquery libpng-tools r-recommended r-doc-html r-cran-testthat 410s r-bioc-biocversion r-cran-remotes r-cran-downlit r-cran-htmlwidgets 410s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 410s r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr r-cran-covr 410s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami 410s r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr 410s r-cran-scales r-cran-spelling r-cran-webutils r-cran-rpostgresql 410s r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-survival 410s r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-markdown r-cran-ragg 410s r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 410s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 410s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 410s r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis r-cran-dygraphs 410s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table 410s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 410s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 410s x11-utils x11-xserver-utils 410s The following NEW packages will be installed: 410s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-x86-64-linux-gnu 410s cpp-x86-64-linux-gnu dctrl-tools fontconfig fonts-font-awesome 410s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 410s g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc gcc-13 gcc-13-base 410s gcc-13-x86-64-linux-gnu gcc-x86-64-linux-gnu gfortran gfortran-13 410s gfortran-13-x86-64-linux-gnu gfortran-x86-64-linux-gnu icu-devtools 410s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 410s libblas3 libboost-dev libboost1.83-dev libbz2-dev libcairo2 libcc1-0 410s libdatrie1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 410s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 410s libisl23 libitm1 libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev libjs-bootstrap 410s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 410s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 410s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 410s libjs-popper.js libjs-prettify libjs-sifter.js 410s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 410s liblatex-tounicode-perl liblsan0 liblua5.4-0 liblzma-dev libmpc3 410s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 410s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 410s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 410s libquadmath0 libreadline-dev libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 410s libteckit0 libtexlua53-5 libthai-data libthai0 libtk8.6 libtsan2 libubsan1 410s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxrender1 410s libxss1 libxt6t64 libzzip-0-13t64 littler node-bootstrap-sass node-html5shiv 410s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 410s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 410s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 410s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 410s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 410s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 410s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 410s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 410s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 410s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 410s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 410s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 410s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 410s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 410s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 410s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 410s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 410s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 410s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 410s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 410s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 410s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 410s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 410s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 410s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 410s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 410s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 410s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 410s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml t1utils 410s tex-common texlive-base texlive-bibtex-extra texlive-binaries 410s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 410s 0 upgraded, 267 newly installed, 0 to remove and 0 not upgraded. 410s Need to get 424 MB/424 MB of archives. 410s After this operation, 1337 MB of additional disk space will be used. 410s Get:1 /tmp/autopkgtest.dx9ivh/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [788 B] 410s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-base amd64 13.2.0-23ubuntu3 [48.6 kB] 410s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 410s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 410s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [11.2 MB] 410s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-13 amd64 13.2.0-23ubuntu3 [1034 B] 410s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 cpp-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [5326 B] 410s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 cpp amd64 4:13.2.0-7ubuntu1 [22.4 kB] 410s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240330-1ubuntu2 [47.7 kB] 410s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240330-1ubuntu2 [147 kB] 410s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240330-1ubuntu2 [29.1 kB] 410s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240330-1ubuntu2 [10.4 kB] 410s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240330-1ubuntu2 [3020 kB] 410s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240330-1ubuntu2 [1310 kB] 410s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240330-1ubuntu2 [2731 kB] 410s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240330-1ubuntu2 [1172 kB] 410s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libhwasan0 amd64 14-20240330-1ubuntu2 [1629 kB] 410s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240330-1ubuntu2 [155 kB] 410s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 libgcc-13-dev amd64 13.2.0-23ubuntu3 [2687 kB] 410s Get:20 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [21.9 MB] 410s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-13 amd64 13.2.0-23ubuntu3 [479 kB] 410s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 gcc-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1212 B] 410s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 gcc amd64 4:13.2.0-7ubuntu1 [5018 B] 410s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libstdc++-13-dev amd64 13.2.0-23ubuntu3 [2398 kB] 410s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [12.5 MB] 410s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 g++-13 amd64 13.2.0-23ubuntu3 [14.5 kB] 410s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 g++-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [964 B] 410s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 g++ amd64 4:13.2.0-7ubuntu1 [1100 B] 410s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 build-essential amd64 12.10ubuntu1 [4928 B] 410s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 dctrl-tools amd64 2.24-3build2 [66.9 kB] 410s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig amd64 2.15.0-1.1ubuntu2 [180 kB] 410s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 410s Get:33 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 410s Get:34 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lmodern all 2.005-1 [4799 kB] 410s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 410s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240330-1ubuntu2 [930 kB] 410s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran-13-dev amd64 13.2.0-23ubuntu3 [942 kB] 410s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13-x86-64-linux-gnu amd64 13.2.0-23ubuntu3 [11.6 MB] 410s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-13 amd64 13.2.0-23ubuntu3 [10.9 kB] 410s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran-x86-64-linux-gnu amd64 4:13.2.0-7ubuntu1 [1024 B] 410s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 gfortran amd64 4:13.2.0-7ubuntu1 [1176 B] 410s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 icu-devtools amd64 74.2-1ubuntu1 [212 kB] 410s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 javascript-common all 11+nmu1 [5936 B] 410s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libio-string-perl all 1.08-4 [11.1 kB] 410s Get:45 http://ftpmaster.internal/ubuntu noble/universe amd64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 410s Get:46 http://ftpmaster.internal/ubuntu noble/universe amd64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 410s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 410s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libblas-dev amd64 3.12.0-3 [170 kB] 410s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 libboost1.83-dev amd64 1.83.0-2.1ubuntu3 [10.7 MB] 410s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libboost-dev amd64 1.83.0.1ubuntu2 [4308 B] 410s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libbz2-dev amd64 1.0.8-5ubuntu1 [33.6 kB] 410s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 410s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 410s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 410s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 410s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-3 [566 kB] 410s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libdatrie1 amd64 0.2.13-3 [20.9 kB] 410s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 410s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2build2 [469 kB] 410s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 410s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libice6 amd64 2:1.0.10-1build2 [42.6 kB] 410s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libicu-dev amd64 74.2-1ubuntu1 [11.9 MB] 410s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8-dev amd64 2.1.5-2ubuntu1 [294 kB] 410s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8-dev amd64 8c-2ubuntu11 [1484 B] 410s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-dev amd64 8c-2ubuntu11 [1482 B] 410s Get:66 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 410s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 410s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 410s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-d3 all 3.5.17-4 [132 kB] 410s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 410s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 410s Get:72 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 410s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 410s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 410s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 410s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 410s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 410s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 410s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 410s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 410s Get:81 http://ftpmaster.internal/ubuntu noble/main amd64 libkpathsea6 amd64 2023.20230311.66589-9build3 [63.0 kB] 410s Get:82 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 410s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack-dev amd64 3.12.0-3 [5196 kB] 410s Get:84 http://ftpmaster.internal/ubuntu noble/main amd64 liblua5.4-0 amd64 5.4.6-3build2 [166 kB] 410s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libncurses-dev amd64 6.4+20240113-1ubuntu1 [384 kB] 410s Get:86 http://ftpmaster.internal/ubuntu noble/main amd64 libthai-data all 0.1.29-2 [158 kB] 410s Get:87 http://ftpmaster.internal/ubuntu noble/main amd64 libthai0 amd64 0.1.29-2 [18.8 kB] 410s Get:88 http://ftpmaster.internal/ubuntu noble/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1build1 [231 kB] 410s Get:89 http://ftpmaster.internal/ubuntu noble/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1build1 [42.5 kB] 410s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1build1 [28.8 kB] 410s Get:91 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper1 amd64 1.1.29 [13.4 kB] 410s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libpaper-utils amd64 1.1.29 [8658 B] 410s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-16-0 amd64 10.42-4ubuntu1 [211 kB] 410s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-32-0 amd64 10.42-4ubuntu1 [198 kB] 410s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-posix3 amd64 10.42-4ubuntu1 [6808 B] 410s Get:96 http://ftpmaster.internal/ubuntu noble/main amd64 libpcre2-dev amd64 10.42-4ubuntu1 [743 kB] 410s Get:97 http://ftpmaster.internal/ubuntu noble/main amd64 libpkgconf3 amd64 1.8.1-2 [31.1 kB] 410s Get:98 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 410s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libpng-dev amd64 1.6.43-5build1 [264 kB] 410s Get:100 http://ftpmaster.internal/ubuntu noble/universe amd64 libpotrace0 amd64 1.16-2 [17.2 kB] 410s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libptexenc1 amd64 2023.20230311.66589-9build3 [40.4 kB] 410s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 libreadline-dev amd64 8.2-4build1 [167 kB] 410s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libsm6 amd64 2:1.2.3-1build2 [16.7 kB] 410s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libsynctex2 amd64 2023.20230311.66589-9build3 [59.6 kB] 410s Get:105 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 410s Get:106 http://ftpmaster.internal/ubuntu noble/universe amd64 libteckit0 amd64 2.5.12+ds1-1 [411 kB] 410s Get:107 http://ftpmaster.internal/ubuntu noble/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9build3 [123 kB] 410s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 410s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 410s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 410s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libxt6t64 amd64 1:1.2.1-1.2build1 [171 kB] 410s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libxmu6 amd64 2:1.1.3-3build2 [47.6 kB] 410s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libxaw7 amd64 2:1.0.14-1build2 [187 kB] 410s Get:114 http://ftpmaster.internal/ubuntu noble/main amd64 libxi6 amd64 2:1.8.1-1 [32.4 kB] 410s Get:115 http://ftpmaster.internal/ubuntu noble/universe amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2build1 [28.1 kB] 410s Get:116 http://ftpmaster.internal/ubuntu noble/main amd64 zip amd64 3.0-13 [176 kB] 410s Get:117 http://ftpmaster.internal/ubuntu noble/main amd64 unzip amd64 6.0-28ubuntu3 [174 kB] 410s Get:118 http://ftpmaster.internal/ubuntu noble/main amd64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 410s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-core amd64 4.3.3-2build2 [27.1 MB] 410s Get:120 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-littler amd64 0.3.19-1 [94.1 kB] 410s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 littler all 0.3.19-1 [2472 B] 410s Get:122 http://ftpmaster.internal/ubuntu noble/universe amd64 node-bootstrap-sass all 3.4.3-2 [187 kB] 410s Get:123 http://ftpmaster.internal/ubuntu noble/universe amd64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 410s Get:124 http://ftpmaster.internal/ubuntu noble/universe amd64 node-normalize.css all 8.0.1-5 [10.8 kB] 410s Get:125 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc-data all 3.1.3-1 [92.4 kB] 410s Get:126 http://ftpmaster.internal/ubuntu noble/universe amd64 pandoc amd64 3.1.3+ds-2 [26.9 MB] 410s Get:127 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf-bin amd64 1.8.1-2 [20.7 kB] 410s Get:128 http://ftpmaster.internal/ubuntu noble/main amd64 pkgconf amd64 1.8.1-2 [16.8 kB] 410s Get:129 http://ftpmaster.internal/ubuntu noble/main amd64 pkg-config amd64 1.8.1-2 [7170 B] 410s Get:130 http://ftpmaster.internal/ubuntu noble/main amd64 liblzma-dev amd64 5.6.1+really5.4.5-1 [176 kB] 410s Get:131 http://ftpmaster.internal/ubuntu noble/universe amd64 r-base-dev all 4.3.3-2build2 [4334 B] 410s Get:132 http://ftpmaster.internal/ubuntu noble/universe amd64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 410s Get:133 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 410s Get:134 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biobase amd64 2.62.0-1 [2136 kB] 410s Get:135 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4vectors amd64 0.40.2+dfsg-1 [2056 kB] 410s Get:136 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-iranges amd64 2.36.0-1 [2252 kB] 410s Get:137 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbi all 1.2.2-1 [823 kB] 410s Get:138 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit amd64 4.0.5-1 [1063 kB] 410s Get:139 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bit64 amd64 4.0.5-1 [465 kB] 410s Get:140 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rlang amd64 1.1.3-1 [1663 kB] 410s Get:141 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cli amd64 3.6.2-1 [1380 kB] 410s Get:142 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-glue amd64 1.7.0-1 [154 kB] 410s Get:143 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 410s Get:144 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-vctrs amd64 0.6.5-1 [1335 kB] 410s Get:145 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-blob all 1.2.4-1 [49.8 kB] 410s Get:146 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fastmap amd64 1.1.1-1 [70.5 kB] 410s Get:147 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cachem amd64 1.0.8-1 [72.1 kB] 410s Get:148 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-memoise all 2.0.1-1 [53.9 kB] 410s Get:149 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 410s Get:150 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 410s Get:151 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-cpp11 all 0.4.7-1 [266 kB] 410s Get:152 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rsqlite amd64 2.3.4-1 [1364 kB] 410s Get:153 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-curl amd64 5.2.0+dfsg-1build2 [177 kB] 410s Get:154 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jsonlite amd64 1.8.8+dfsg-1 [441 kB] 410s Get:155 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mime amd64 0.12-1 [35.8 kB] 410s Get:156 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sys amd64 3.4.2-1 [44.6 kB] 410s Get:157 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-askpass amd64 1.2.0-1 [24.6 kB] 410s Get:158 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-openssl amd64 2.1.1+dfsg-2build2 [402 kB] 410s Get:159 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-r6 all 2.5.1-1 [99.0 kB] 410s Get:160 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 410s Get:161 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-png amd64 0.1-8-1build2 [40.6 kB] 410s Get:162 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 410s Get:163 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-xvector amd64 0.42.0-1 [621 kB] 410s Get:164 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bitops amd64 1.0-7-1 [29.8 kB] 410s Get:165 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcurl amd64 1.98-1.14+dfsg-1build2 [793 kB] 410s Get:166 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 410s Get:167 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 410s Get:168 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-crayon all 1.5.2-1 [164 kB] 410s Get:169 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biostrings amd64 2.70.2+dfsg-1 [13.6 MB] 410s Get:170 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 410s Get:171 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 410s Get:172 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-generics all 0.1.3-1 [81.3 kB] 410s Get:173 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-magrittr amd64 2.0.3-1 [154 kB] 410s Get:174 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fansi amd64 1.0.5-1 [619 kB] 410s Get:175 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-utf8 amd64 1.2.4-1 [140 kB] 410s Get:176 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 410s Get:177 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tibble amd64 3.2.1+dfsg-2 [415 kB] 410s Get:178 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-withr all 2.5.0-1 [225 kB] 410s Get:179 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyselect amd64 1.2.0+dfsg-1 [218 kB] 410s Get:180 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dplyr amd64 1.1.4-1 [1515 kB] 410s Get:181 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-purrr amd64 1.0.2-1 [502 kB] 410s Get:182 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringi amd64 1.8.3-1 [873 kB] 410s Get:183 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-stringr all 1.5.1-1 [290 kB] 410s Get:184 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tidyr amd64 1.3.1-1 [1156 kB] 410s Get:185 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 410s Get:186 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-filelock amd64 1.0.3-1 [29.6 kB] 410s Get:187 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 410s Get:188 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 410s Get:189 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-formatr all 1.14-1 [152 kB] 410s Get:190 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 410s Get:191 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 410s Get:192 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 410s Get:193 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 410s Get:194 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-codetools all 0.2-19-1 [90.5 kB] 410s Get:195 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bh all 1.84.0-1 [5962 B] 410s Get:196 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocparallel amd64 1.36.0-1 [1347 kB] 410s Get:197 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-base64enc amd64 0.1-3-3 [27.6 kB] 410s Get:198 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-digest amd64 0.6.34-1 [186 kB] 410s Get:199 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-ellipsis amd64 0.3.2-2 [35.6 kB] 410s Get:200 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-htmltools amd64 0.5.7-1 [369 kB] 410s Get:201 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-evaluate all 0.23-1 [90.2 kB] 410s Get:202 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xfun amd64 0.41+dfsg-1 [415 kB] 410s Get:203 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 410s Get:204 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-yaml amd64 2.3.8-1 [108 kB] 410s Get:205 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 410s Get:206 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 410s Get:207 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 410s Get:208 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fs amd64 1.6.3+dfsg-1build2 [229 kB] 410s Get:209 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rappdirs amd64 0.3.3-1 [47.5 kB] 410s Get:210 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sass amd64 0.4.8+dfsg-1 [996 kB] 410s Get:211 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 410s Get:212 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 410s Get:213 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-tinytex all 0.49-1 [141 kB] 410s Get:214 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 410s Get:215 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 410s Get:216 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcpp amd64 1.0.12-1 [1981 kB] 410s Get:217 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-later amd64 1.3.2+dfsg-1 [123 kB] 410s Get:218 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-promises amd64 1.2.1+dfsg-1 [284 kB] 410s Get:219 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-httpuv amd64 1.6.14+dfsg-1build2 [510 kB] 410s Get:220 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xtable all 1:1.8-4-2 [689 kB] 410s Get:221 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-sourcetools amd64 0.1.7-1-1 [48.1 kB] 410s Get:222 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-commonmark amd64 1.9.1-1 [131 kB] 410s Get:223 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 410s Get:224 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 410s Get:225 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 410s Get:226 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 410s Get:227 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 410s Get:228 http://ftpmaster.internal/ubuntu noble/universe amd64 tex-common all 6.18 [32.8 kB] 410s Get:229 http://ftpmaster.internal/ubuntu noble/main amd64 t1utils amd64 1.41-4build2 [61.3 kB] 410s Get:230 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-binaries amd64 2023.20230311.66589-9build3 [8529 kB] 411s Get:231 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-base all 2023.20240207-1 [21.7 MB] 411s Get:232 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-latex-base all 2023.20240207-1 [1238 kB] 411s Get:233 http://ftpmaster.internal/ubuntu noble/universe amd64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 411s Get:234 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 411s Get:235 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml amd64 3.99-0.16.1-1 [1733 kB] 411s Get:236 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hms all 1.1.3-1 [96.5 kB] 411s Get:237 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-prettyunits all 1.2.0-1 [162 kB] 411s Get:238 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-progress all 1.2.3-1 [91.9 kB] 411s Get:239 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-xml2 amd64 1.3.6-1 [322 kB] 411s Get:240 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 411s Get:241 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-lattice amd64 0.22-5-1 [1342 kB] 411s Get:242 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrix amd64 1.6-5-1 [3830 kB] 411s Get:243 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-matrixstats amd64 1.2.0-1 [488 kB] 411s Get:244 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 411s Get:245 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-abind all 1.4-5-2 [63.6 kB] 411s Get:246 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-s4arrays amd64 1.2.0+dfsg-1 [501 kB] 411s Get:247 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-sparsearray amd64 1.2.4+dfsg-1 [1195 kB] 411s Get:248 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-delayedarray amd64 0.28.0+dfsg-1 [1787 kB] 411s Get:249 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicranges amd64 1.54.1+dfsg-1 [1823 kB] 412s Get:250 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 412s Get:251 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rhtslib amd64 2.4.1+dfsg-3build2 [1361 kB] 412s Get:252 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 r-bioc-rsamtools amd64 2.18.0+dfsg-1 [3640 kB] 412s Get:253 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicalignments amd64 1.38.2-1 [2133 kB] 412s Get:254 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rjson amd64 0.2.21-1 [143 kB] 412s Get:255 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-restfulr amd64 0.0.15-1 [380 kB] 412s Get:256 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-rtracklayer amd64 1.62.0-1 [5108 kB] 412s Get:257 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 412s Get:258 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 412s Get:259 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-jpeg amd64 0.1-10-1 [31.4 kB] 412s Get:260 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 412s Get:261 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-deldir amd64 2.0-4-1build1 [270 kB] 412s Get:262 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-rcppeigen amd64 0.3.4.0.0-1build1 [1425 kB] 412s Get:263 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-interp amd64 1.1-6-1 [1454 kB] 412s Get:264 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-mass amd64 7.3-60.0.1-1 [1119 kB] 412s Get:265 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 412s Get:266 http://ftpmaster.internal/ubuntu noble/universe amd64 r-bioc-shortread amd64 1.60.0-2 [5202 kB] 412s Get:267 http://ftpmaster.internal/ubuntu noble/universe amd64 r-cran-runit all 0.4.33-1 [377 kB] 412s Preconfiguring packages ... 412s Fetched 424 MB in 4s (99.0 MB/s) 412s Selecting previously unselected package gcc-13-base:amd64. 413s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 73681 files and directories currently installed.) 413s Preparing to unpack .../000-gcc-13-base_13.2.0-23ubuntu3_amd64.deb ... 413s Unpacking gcc-13-base:amd64 (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package libisl23:amd64. 413s Preparing to unpack .../001-libisl23_0.26-3_amd64.deb ... 413s Unpacking libisl23:amd64 (0.26-3) ... 413s Selecting previously unselected package libmpc3:amd64. 413s Preparing to unpack .../002-libmpc3_1.3.1-1_amd64.deb ... 413s Unpacking libmpc3:amd64 (1.3.1-1) ... 413s Selecting previously unselected package cpp-13-x86-64-linux-gnu. 413s Preparing to unpack .../003-cpp-13-x86-64-linux-gnu_13.2.0-23ubuntu3_amd64.deb ... 413s Unpacking cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package cpp-13. 413s Preparing to unpack .../004-cpp-13_13.2.0-23ubuntu3_amd64.deb ... 413s Unpacking cpp-13 (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package cpp-x86-64-linux-gnu. 413s Preparing to unpack .../005-cpp-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 413s Unpacking cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 413s Selecting previously unselected package cpp. 413s Preparing to unpack .../006-cpp_4%3a13.2.0-7ubuntu1_amd64.deb ... 413s Unpacking cpp (4:13.2.0-7ubuntu1) ... 413s Selecting previously unselected package libcc1-0:amd64. 413s Preparing to unpack .../007-libcc1-0_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libcc1-0:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libgomp1:amd64. 413s Preparing to unpack .../008-libgomp1_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libgomp1:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libitm1:amd64. 413s Preparing to unpack .../009-libitm1_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libitm1:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libatomic1:amd64. 413s Preparing to unpack .../010-libatomic1_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libatomic1:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libasan8:amd64. 413s Preparing to unpack .../011-libasan8_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libasan8:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package liblsan0:amd64. 413s Preparing to unpack .../012-liblsan0_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking liblsan0:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libtsan2:amd64. 413s Preparing to unpack .../013-libtsan2_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libtsan2:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libubsan1:amd64. 413s Preparing to unpack .../014-libubsan1_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libubsan1:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libhwasan0:amd64. 413s Preparing to unpack .../015-libhwasan0_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libhwasan0:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libquadmath0:amd64. 413s Preparing to unpack .../016-libquadmath0_14-20240330-1ubuntu2_amd64.deb ... 413s Unpacking libquadmath0:amd64 (14-20240330-1ubuntu2) ... 413s Selecting previously unselected package libgcc-13-dev:amd64. 413s Preparing to unpack .../017-libgcc-13-dev_13.2.0-23ubuntu3_amd64.deb ... 413s Unpacking libgcc-13-dev:amd64 (13.2.0-23ubuntu3) ... 413s Selecting previously unselected package gcc-13-x86-64-linux-gnu. 413s Preparing to unpack .../018-gcc-13-x86-64-linux-gnu_13.2.0-23ubuntu3_amd64.deb ... 413s Unpacking gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 414s Selecting previously unselected package gcc-13. 414s Preparing to unpack .../019-gcc-13_13.2.0-23ubuntu3_amd64.deb ... 414s Unpacking gcc-13 (13.2.0-23ubuntu3) ... 414s Selecting previously unselected package gcc-x86-64-linux-gnu. 414s Preparing to unpack .../020-gcc-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 414s Unpacking gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 414s Selecting previously unselected package gcc. 414s Preparing to unpack .../021-gcc_4%3a13.2.0-7ubuntu1_amd64.deb ... 414s Unpacking gcc (4:13.2.0-7ubuntu1) ... 414s Selecting previously unselected package libstdc++-13-dev:amd64. 414s Preparing to unpack .../022-libstdc++-13-dev_13.2.0-23ubuntu3_amd64.deb ... 414s Unpacking libstdc++-13-dev:amd64 (13.2.0-23ubuntu3) ... 414s Selecting previously unselected package g++-13-x86-64-linux-gnu. 414s Preparing to unpack .../023-g++-13-x86-64-linux-gnu_13.2.0-23ubuntu3_amd64.deb ... 414s Unpacking g++-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 414s Selecting previously unselected package g++-13. 414s Preparing to unpack .../024-g++-13_13.2.0-23ubuntu3_amd64.deb ... 414s Unpacking g++-13 (13.2.0-23ubuntu3) ... 414s Selecting previously unselected package g++-x86-64-linux-gnu. 414s Preparing to unpack .../025-g++-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 414s Unpacking g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 414s Selecting previously unselected package g++. 414s Preparing to unpack .../026-g++_4%3a13.2.0-7ubuntu1_amd64.deb ... 414s Unpacking g++ (4:13.2.0-7ubuntu1) ... 414s Selecting previously unselected package build-essential. 414s Preparing to unpack .../027-build-essential_12.10ubuntu1_amd64.deb ... 414s Unpacking build-essential (12.10ubuntu1) ... 414s Selecting previously unselected package dctrl-tools. 414s Preparing to unpack .../028-dctrl-tools_2.24-3build2_amd64.deb ... 414s Unpacking dctrl-tools (2.24-3build2) ... 414s Selecting previously unselected package fontconfig. 414s Preparing to unpack .../029-fontconfig_2.15.0-1.1ubuntu2_amd64.deb ... 414s Unpacking fontconfig (2.15.0-1.1ubuntu2) ... 414s Selecting previously unselected package fonts-font-awesome. 414s Preparing to unpack .../030-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 414s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 414s Selecting previously unselected package fonts-glyphicons-halflings. 414s Preparing to unpack .../031-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 414s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 414s Selecting previously unselected package fonts-lmodern. 415s Preparing to unpack .../032-fonts-lmodern_2.005-1_all.deb ... 415s Unpacking fonts-lmodern (2.005-1) ... 415s Selecting previously unselected package fonts-mathjax. 415s Preparing to unpack .../033-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 415s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 417s Selecting previously unselected package libgfortran5:amd64. 417s Preparing to unpack .../034-libgfortran5_14-20240330-1ubuntu2_amd64.deb ... 417s Unpacking libgfortran5:amd64 (14-20240330-1ubuntu2) ... 417s Selecting previously unselected package libgfortran-13-dev:amd64. 417s Preparing to unpack .../035-libgfortran-13-dev_13.2.0-23ubuntu3_amd64.deb ... 417s Unpacking libgfortran-13-dev:amd64 (13.2.0-23ubuntu3) ... 417s Selecting previously unselected package gfortran-13-x86-64-linux-gnu. 417s Preparing to unpack .../036-gfortran-13-x86-64-linux-gnu_13.2.0-23ubuntu3_amd64.deb ... 417s Unpacking gfortran-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 417s Selecting previously unselected package gfortran-13. 417s Preparing to unpack .../037-gfortran-13_13.2.0-23ubuntu3_amd64.deb ... 417s Unpacking gfortran-13 (13.2.0-23ubuntu3) ... 417s Selecting previously unselected package gfortran-x86-64-linux-gnu. 417s Preparing to unpack .../038-gfortran-x86-64-linux-gnu_4%3a13.2.0-7ubuntu1_amd64.deb ... 417s Unpacking gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 417s Selecting previously unselected package gfortran. 417s Preparing to unpack .../039-gfortran_4%3a13.2.0-7ubuntu1_amd64.deb ... 417s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 417s Selecting previously unselected package icu-devtools. 417s Preparing to unpack .../040-icu-devtools_74.2-1ubuntu1_amd64.deb ... 417s Unpacking icu-devtools (74.2-1ubuntu1) ... 417s Selecting previously unselected package javascript-common. 417s Preparing to unpack .../041-javascript-common_11+nmu1_all.deb ... 417s Unpacking javascript-common (11+nmu1) ... 417s Selecting previously unselected package libio-string-perl. 417s Preparing to unpack .../042-libio-string-perl_1.08-4_all.deb ... 417s Unpacking libio-string-perl (1.08-4) ... 417s Selecting previously unselected package liblatex-tounicode-perl. 417s Preparing to unpack .../043-liblatex-tounicode-perl_0.54-2_all.deb ... 417s Unpacking liblatex-tounicode-perl (0.54-2) ... 417s Selecting previously unselected package libbibtex-parser-perl. 417s Preparing to unpack .../044-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 417s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 417s Selecting previously unselected package libblas3:amd64. 417s Preparing to unpack .../045-libblas3_3.12.0-3_amd64.deb ... 417s Unpacking libblas3:amd64 (3.12.0-3) ... 417s Selecting previously unselected package libblas-dev:amd64. 417s Preparing to unpack .../046-libblas-dev_3.12.0-3_amd64.deb ... 417s Unpacking libblas-dev:amd64 (3.12.0-3) ... 417s Selecting previously unselected package libboost1.83-dev:amd64. 417s Preparing to unpack .../047-libboost1.83-dev_1.83.0-2.1ubuntu3_amd64.deb ... 417s Unpacking libboost1.83-dev:amd64 (1.83.0-2.1ubuntu3) ... 418s Selecting previously unselected package libboost-dev:amd64. 418s Preparing to unpack .../048-libboost-dev_1.83.0.1ubuntu2_amd64.deb ... 418s Unpacking libboost-dev:amd64 (1.83.0.1ubuntu2) ... 418s Selecting previously unselected package libbz2-dev:amd64. 418s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_amd64.deb ... 418s Unpacking libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 418s Selecting previously unselected package libpixman-1-0:amd64. 418s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_amd64.deb ... 418s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 418s Selecting previously unselected package libxcb-render0:amd64. 418s Preparing to unpack .../051-libxcb-render0_1.15-1_amd64.deb ... 418s Unpacking libxcb-render0:amd64 (1.15-1) ... 418s Selecting previously unselected package libxcb-shm0:amd64. 418s Preparing to unpack .../052-libxcb-shm0_1.15-1_amd64.deb ... 418s Unpacking libxcb-shm0:amd64 (1.15-1) ... 418s Selecting previously unselected package libxrender1:amd64. 418s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 418s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 418s Selecting previously unselected package libcairo2:amd64. 418s Preparing to unpack .../054-libcairo2_1.18.0-3_amd64.deb ... 418s Unpacking libcairo2:amd64 (1.18.0-3) ... 418s Selecting previously unselected package libdatrie1:amd64. 418s Preparing to unpack .../055-libdatrie1_0.2.13-3_amd64.deb ... 418s Unpacking libdatrie1:amd64 (0.2.13-3) ... 418s Selecting previously unselected package libgraphite2-3:amd64. 418s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_amd64.deb ... 418s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 418s Selecting previously unselected package libharfbuzz0b:amd64. 418s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2build2_amd64.deb ... 418s Unpacking libharfbuzz0b:amd64 (8.3.0-2build2) ... 418s Selecting previously unselected package x11-common. 418s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 418s Unpacking x11-common (1:7.7+23ubuntu2) ... 418s Selecting previously unselected package libice6:amd64. 418s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_amd64.deb ... 418s Unpacking libice6:amd64 (2:1.0.10-1build2) ... 418s Selecting previously unselected package libicu-dev:amd64. 418s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_amd64.deb ... 418s Unpacking libicu-dev:amd64 (74.2-1ubuntu1) ... 418s Selecting previously unselected package libjpeg-turbo8-dev:amd64. 418s Preparing to unpack .../061-libjpeg-turbo8-dev_2.1.5-2ubuntu1_amd64.deb ... 418s Unpacking libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 418s Selecting previously unselected package libjpeg8-dev:amd64. 418s Preparing to unpack .../062-libjpeg8-dev_8c-2ubuntu11_amd64.deb ... 418s Unpacking libjpeg8-dev:amd64 (8c-2ubuntu11) ... 418s Selecting previously unselected package libjpeg-dev:amd64. 418s Preparing to unpack .../063-libjpeg-dev_8c-2ubuntu11_amd64.deb ... 418s Unpacking libjpeg-dev:amd64 (8c-2ubuntu11) ... 418s Selecting previously unselected package libjs-bootstrap. 418s Preparing to unpack .../064-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 418s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 418s Selecting previously unselected package libjs-popper.js. 418s Preparing to unpack .../065-libjs-popper.js_1.16.1+ds-6_all.deb ... 418s Unpacking libjs-popper.js (1.16.1+ds-6) ... 418s Selecting previously unselected package libjs-bootstrap4. 418s Preparing to unpack .../066-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 418s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 419s Selecting previously unselected package libjs-d3. 419s Preparing to unpack .../067-libjs-d3_3.5.17-4_all.deb ... 419s Unpacking libjs-d3 (3.5.17-4) ... 419s Selecting previously unselected package libjs-es5-shim. 419s Preparing to unpack .../068-libjs-es5-shim_4.6.7-2_all.deb ... 419s Unpacking libjs-es5-shim (4.6.7-2) ... 419s Selecting previously unselected package libjs-highlight.js. 419s Preparing to unpack .../069-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 419s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 419s Selecting previously unselected package libjs-jquery. 419s Preparing to unpack .../070-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 419s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 419s Selecting previously unselected package libjs-jquery-datatables. 419s Preparing to unpack .../071-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 419s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 419s Selecting previously unselected package libjs-sifter.js. 419s Preparing to unpack .../072-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 419s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 419s Selecting previously unselected package libjs-microplugin.js. 419s Preparing to unpack .../073-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 419s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 419s Selecting previously unselected package libjs-jquery-selectize.js. 419s Preparing to unpack .../074-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 419s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 419s Selecting previously unselected package libjs-jquery-ui. 419s Preparing to unpack .../075-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 419s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 419s Selecting previously unselected package libjs-json. 419s Preparing to unpack .../076-libjs-json_0~20221030+~1.0.8-1_all.deb ... 419s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 419s Selecting previously unselected package libjs-lunr. 419s Preparing to unpack .../077-libjs-lunr_2.3.9~dfsg-2_all.deb ... 419s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 419s Selecting previously unselected package libjs-prettify. 419s Preparing to unpack .../078-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 419s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 419s Selecting previously unselected package libkpathsea6:amd64. 419s Preparing to unpack .../079-libkpathsea6_2023.20230311.66589-9build3_amd64.deb ... 419s Unpacking libkpathsea6:amd64 (2023.20230311.66589-9build3) ... 419s Selecting previously unselected package liblapack3:amd64. 419s Preparing to unpack .../080-liblapack3_3.12.0-3_amd64.deb ... 419s Unpacking liblapack3:amd64 (3.12.0-3) ... 419s Selecting previously unselected package liblapack-dev:amd64. 419s Preparing to unpack .../081-liblapack-dev_3.12.0-3_amd64.deb ... 419s Unpacking liblapack-dev:amd64 (3.12.0-3) ... 419s Selecting previously unselected package liblua5.4-0:amd64. 419s Preparing to unpack .../082-liblua5.4-0_5.4.6-3build2_amd64.deb ... 419s Unpacking liblua5.4-0:amd64 (5.4.6-3build2) ... 419s Selecting previously unselected package libncurses-dev:amd64. 419s Preparing to unpack .../083-libncurses-dev_6.4+20240113-1ubuntu1_amd64.deb ... 419s Unpacking libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 419s Selecting previously unselected package libthai-data. 419s Preparing to unpack .../084-libthai-data_0.1.29-2_all.deb ... 419s Unpacking libthai-data (0.1.29-2) ... 419s Selecting previously unselected package libthai0:amd64. 419s Preparing to unpack .../085-libthai0_0.1.29-2_amd64.deb ... 419s Unpacking libthai0:amd64 (0.1.29-2) ... 419s Selecting previously unselected package libpango-1.0-0:amd64. 419s Preparing to unpack .../086-libpango-1.0-0_1.52.1+ds-1build1_amd64.deb ... 419s Unpacking libpango-1.0-0:amd64 (1.52.1+ds-1build1) ... 419s Selecting previously unselected package libpangoft2-1.0-0:amd64. 419s Preparing to unpack .../087-libpangoft2-1.0-0_1.52.1+ds-1build1_amd64.deb ... 419s Unpacking libpangoft2-1.0-0:amd64 (1.52.1+ds-1build1) ... 419s Selecting previously unselected package libpangocairo-1.0-0:amd64. 419s Preparing to unpack .../088-libpangocairo-1.0-0_1.52.1+ds-1build1_amd64.deb ... 419s Unpacking libpangocairo-1.0-0:amd64 (1.52.1+ds-1build1) ... 419s Selecting previously unselected package libpaper1:amd64. 419s Preparing to unpack .../089-libpaper1_1.1.29_amd64.deb ... 419s Unpacking libpaper1:amd64 (1.1.29) ... 420s Selecting previously unselected package libpaper-utils. 420s Preparing to unpack .../090-libpaper-utils_1.1.29_amd64.deb ... 420s Unpacking libpaper-utils (1.1.29) ... 420s Selecting previously unselected package libpcre2-16-0:amd64. 420s Preparing to unpack .../091-libpcre2-16-0_10.42-4ubuntu1_amd64.deb ... 420s Unpacking libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 420s Selecting previously unselected package libpcre2-32-0:amd64. 420s Preparing to unpack .../092-libpcre2-32-0_10.42-4ubuntu1_amd64.deb ... 420s Unpacking libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 420s Selecting previously unselected package libpcre2-posix3:amd64. 420s Preparing to unpack .../093-libpcre2-posix3_10.42-4ubuntu1_amd64.deb ... 420s Unpacking libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 420s Selecting previously unselected package libpcre2-dev:amd64. 420s Preparing to unpack .../094-libpcre2-dev_10.42-4ubuntu1_amd64.deb ... 420s Unpacking libpcre2-dev:amd64 (10.42-4ubuntu1) ... 420s Selecting previously unselected package libpkgconf3:amd64. 420s Preparing to unpack .../095-libpkgconf3_1.8.1-2_amd64.deb ... 420s Unpacking libpkgconf3:amd64 (1.8.1-2) ... 420s Selecting previously unselected package zlib1g-dev:amd64. 420s Preparing to unpack .../096-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ... 420s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 420s Selecting previously unselected package libpng-dev:amd64. 420s Preparing to unpack .../097-libpng-dev_1.6.43-5build1_amd64.deb ... 420s Unpacking libpng-dev:amd64 (1.6.43-5build1) ... 420s Selecting previously unselected package libpotrace0:amd64. 420s Preparing to unpack .../098-libpotrace0_1.16-2_amd64.deb ... 420s Unpacking libpotrace0:amd64 (1.16-2) ... 420s Selecting previously unselected package libptexenc1:amd64. 420s Preparing to unpack .../099-libptexenc1_2023.20230311.66589-9build3_amd64.deb ... 420s Unpacking libptexenc1:amd64 (2023.20230311.66589-9build3) ... 420s Selecting previously unselected package libreadline-dev:amd64. 420s Preparing to unpack .../100-libreadline-dev_8.2-4build1_amd64.deb ... 420s Unpacking libreadline-dev:amd64 (8.2-4build1) ... 420s Selecting previously unselected package libsm6:amd64. 420s Preparing to unpack .../101-libsm6_2%3a1.2.3-1build2_amd64.deb ... 420s Unpacking libsm6:amd64 (2:1.2.3-1build2) ... 420s Selecting previously unselected package libsynctex2:amd64. 420s Preparing to unpack .../102-libsynctex2_2023.20230311.66589-9build3_amd64.deb ... 420s Unpacking libsynctex2:amd64 (2023.20230311.66589-9build3) ... 420s Selecting previously unselected package libtcl8.6:amd64. 420s Preparing to unpack .../103-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 420s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 420s Selecting previously unselected package libteckit0:amd64. 420s Preparing to unpack .../104-libteckit0_2.5.12+ds1-1_amd64.deb ... 420s Unpacking libteckit0:amd64 (2.5.12+ds1-1) ... 420s Selecting previously unselected package libtexlua53-5:amd64. 420s Preparing to unpack .../105-libtexlua53-5_2023.20230311.66589-9build3_amd64.deb ... 420s Unpacking libtexlua53-5:amd64 (2023.20230311.66589-9build3) ... 420s Selecting previously unselected package libxft2:amd64. 420s Preparing to unpack .../106-libxft2_2.3.6-1_amd64.deb ... 420s Unpacking libxft2:amd64 (2.3.6-1) ... 420s Selecting previously unselected package libxss1:amd64. 420s Preparing to unpack .../107-libxss1_1%3a1.2.3-1build2_amd64.deb ... 420s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 420s Selecting previously unselected package libtk8.6:amd64. 420s Preparing to unpack .../108-libtk8.6_8.6.14-1build1_amd64.deb ... 420s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 420s Selecting previously unselected package libxt6t64:amd64. 420s Preparing to unpack .../109-libxt6t64_1%3a1.2.1-1.2build1_amd64.deb ... 420s Unpacking libxt6t64:amd64 (1:1.2.1-1.2build1) ... 420s Selecting previously unselected package libxmu6:amd64. 420s Preparing to unpack .../110-libxmu6_2%3a1.1.3-3build2_amd64.deb ... 420s Unpacking libxmu6:amd64 (2:1.1.3-3build2) ... 420s Selecting previously unselected package libxaw7:amd64. 420s Preparing to unpack .../111-libxaw7_2%3a1.0.14-1build2_amd64.deb ... 420s Unpacking libxaw7:amd64 (2:1.0.14-1build2) ... 420s Selecting previously unselected package libxi6:amd64. 420s Preparing to unpack .../112-libxi6_2%3a1.8.1-1_amd64.deb ... 420s Unpacking libxi6:amd64 (2:1.8.1-1) ... 420s Selecting previously unselected package libzzip-0-13t64:amd64. 420s Preparing to unpack .../113-libzzip-0-13t64_0.13.72+dfsg.1-1.2build1_amd64.deb ... 420s Unpacking libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ... 420s Selecting previously unselected package zip. 420s Preparing to unpack .../114-zip_3.0-13_amd64.deb ... 420s Unpacking zip (3.0-13) ... 420s Selecting previously unselected package unzip. 420s Preparing to unpack .../115-unzip_6.0-28ubuntu3_amd64.deb ... 420s Unpacking unzip (6.0-28ubuntu3) ... 420s Selecting previously unselected package xdg-utils. 420s Preparing to unpack .../116-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 420s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 420s Selecting previously unselected package r-base-core. 420s Preparing to unpack .../117-r-base-core_4.3.3-2build2_amd64.deb ... 420s Unpacking r-base-core (4.3.3-2build2) ... 421s Selecting previously unselected package r-cran-littler. 421s Preparing to unpack .../118-r-cran-littler_0.3.19-1_amd64.deb ... 421s Unpacking r-cran-littler (0.3.19-1) ... 421s Selecting previously unselected package littler. 421s Preparing to unpack .../119-littler_0.3.19-1_all.deb ... 421s Unpacking littler (0.3.19-1) ... 421s Selecting previously unselected package node-bootstrap-sass. 421s Preparing to unpack .../120-node-bootstrap-sass_3.4.3-2_all.deb ... 421s Unpacking node-bootstrap-sass (3.4.3-2) ... 421s Selecting previously unselected package node-html5shiv. 421s Preparing to unpack .../121-node-html5shiv_3.7.3+dfsg-5_all.deb ... 421s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 421s Selecting previously unselected package node-normalize.css. 421s Preparing to unpack .../122-node-normalize.css_8.0.1-5_all.deb ... 421s Unpacking node-normalize.css (8.0.1-5) ... 421s Selecting previously unselected package pandoc-data. 421s Preparing to unpack .../123-pandoc-data_3.1.3-1_all.deb ... 421s Unpacking pandoc-data (3.1.3-1) ... 421s Selecting previously unselected package pandoc. 421s Preparing to unpack .../124-pandoc_3.1.3+ds-2_amd64.deb ... 421s Unpacking pandoc (3.1.3+ds-2) ... 422s Selecting previously unselected package pkgconf-bin. 422s Preparing to unpack .../125-pkgconf-bin_1.8.1-2_amd64.deb ... 422s Unpacking pkgconf-bin (1.8.1-2) ... 422s Selecting previously unselected package pkgconf:amd64. 422s Preparing to unpack .../126-pkgconf_1.8.1-2_amd64.deb ... 422s Unpacking pkgconf:amd64 (1.8.1-2) ... 422s Selecting previously unselected package pkg-config:amd64. 422s Preparing to unpack .../127-pkg-config_1.8.1-2_amd64.deb ... 422s Unpacking pkg-config:amd64 (1.8.1-2) ... 422s Selecting previously unselected package liblzma-dev:amd64. 422s Preparing to unpack .../128-liblzma-dev_5.6.1+really5.4.5-1_amd64.deb ... 422s Unpacking liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... 422s Selecting previously unselected package r-base-dev. 422s Preparing to unpack .../129-r-base-dev_4.3.3-2build2_all.deb ... 422s Unpacking r-base-dev (4.3.3-2build2) ... 422s Selecting previously unselected package pkg-r-autopkgtest. 422s Preparing to unpack .../130-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 422s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 425s Selecting previously unselected package r-bioc-biocgenerics. 425s Preparing to unpack .../131-r-bioc-biocgenerics_0.48.1-2_all.deb ... 425s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 425s Selecting previously unselected package r-bioc-biobase. 425s Preparing to unpack .../132-r-bioc-biobase_2.62.0-1_amd64.deb ... 425s Unpacking r-bioc-biobase (2.62.0-1) ... 425s Selecting previously unselected package r-bioc-s4vectors. 425s Preparing to unpack .../133-r-bioc-s4vectors_0.40.2+dfsg-1_amd64.deb ... 425s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 425s Selecting previously unselected package r-bioc-iranges. 425s Preparing to unpack .../134-r-bioc-iranges_2.36.0-1_amd64.deb ... 425s Unpacking r-bioc-iranges (2.36.0-1) ... 425s Selecting previously unselected package r-cran-dbi. 425s Preparing to unpack .../135-r-cran-dbi_1.2.2-1_all.deb ... 425s Unpacking r-cran-dbi (1.2.2-1) ... 425s Selecting previously unselected package r-cran-bit. 425s Preparing to unpack .../136-r-cran-bit_4.0.5-1_amd64.deb ... 425s Unpacking r-cran-bit (4.0.5-1) ... 425s Selecting previously unselected package r-cran-bit64. 425s Preparing to unpack .../137-r-cran-bit64_4.0.5-1_amd64.deb ... 425s Unpacking r-cran-bit64 (4.0.5-1) ... 425s Selecting previously unselected package r-cran-rlang. 425s Preparing to unpack .../138-r-cran-rlang_1.1.3-1_amd64.deb ... 425s Unpacking r-cran-rlang (1.1.3-1) ... 425s Selecting previously unselected package r-cran-cli. 425s Preparing to unpack .../139-r-cran-cli_3.6.2-1_amd64.deb ... 425s Unpacking r-cran-cli (3.6.2-1) ... 425s Selecting previously unselected package r-cran-glue. 425s Preparing to unpack .../140-r-cran-glue_1.7.0-1_amd64.deb ... 425s Unpacking r-cran-glue (1.7.0-1) ... 425s Selecting previously unselected package r-cran-lifecycle. 425s Preparing to unpack .../141-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 425s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 425s Selecting previously unselected package r-cran-vctrs. 425s Preparing to unpack .../142-r-cran-vctrs_0.6.5-1_amd64.deb ... 425s Unpacking r-cran-vctrs (0.6.5-1) ... 425s Selecting previously unselected package r-cran-blob. 425s Preparing to unpack .../143-r-cran-blob_1.2.4-1_all.deb ... 425s Unpacking r-cran-blob (1.2.4-1) ... 425s Selecting previously unselected package r-cran-fastmap. 425s Preparing to unpack .../144-r-cran-fastmap_1.1.1-1_amd64.deb ... 425s Unpacking r-cran-fastmap (1.1.1-1) ... 425s Selecting previously unselected package r-cran-cachem. 425s Preparing to unpack .../145-r-cran-cachem_1.0.8-1_amd64.deb ... 425s Unpacking r-cran-cachem (1.0.8-1) ... 425s Selecting previously unselected package r-cran-memoise. 425s Preparing to unpack .../146-r-cran-memoise_2.0.1-1_all.deb ... 425s Unpacking r-cran-memoise (2.0.1-1) ... 425s Selecting previously unselected package r-cran-pkgconfig. 425s Preparing to unpack .../147-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 425s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 425s Selecting previously unselected package r-cran-plogr. 425s Preparing to unpack .../148-r-cran-plogr_0.2.0-3build1_all.deb ... 425s Unpacking r-cran-plogr (0.2.0-3build1) ... 425s Selecting previously unselected package r-cran-cpp11. 425s Preparing to unpack .../149-r-cran-cpp11_0.4.7-1_all.deb ... 425s Unpacking r-cran-cpp11 (0.4.7-1) ... 425s Selecting previously unselected package r-cran-rsqlite. 425s Preparing to unpack .../150-r-cran-rsqlite_2.3.4-1_amd64.deb ... 425s Unpacking r-cran-rsqlite (2.3.4-1) ... 425s Selecting previously unselected package r-cran-curl. 425s Preparing to unpack .../151-r-cran-curl_5.2.0+dfsg-1build2_amd64.deb ... 425s Unpacking r-cran-curl (5.2.0+dfsg-1build2) ... 425s Selecting previously unselected package r-cran-jsonlite. 425s Preparing to unpack .../152-r-cran-jsonlite_1.8.8+dfsg-1_amd64.deb ... 425s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 425s Selecting previously unselected package r-cran-mime. 425s Preparing to unpack .../153-r-cran-mime_0.12-1_amd64.deb ... 425s Unpacking r-cran-mime (0.12-1) ... 425s Selecting previously unselected package r-cran-sys. 425s Preparing to unpack .../154-r-cran-sys_3.4.2-1_amd64.deb ... 425s Unpacking r-cran-sys (3.4.2-1) ... 425s Selecting previously unselected package r-cran-askpass. 425s Preparing to unpack .../155-r-cran-askpass_1.2.0-1_amd64.deb ... 425s Unpacking r-cran-askpass (1.2.0-1) ... 425s Selecting previously unselected package r-cran-openssl. 425s Preparing to unpack .../156-r-cran-openssl_2.1.1+dfsg-2build2_amd64.deb ... 425s Unpacking r-cran-openssl (2.1.1+dfsg-2build2) ... 425s Selecting previously unselected package r-cran-r6. 425s Preparing to unpack .../157-r-cran-r6_2.5.1-1_all.deb ... 425s Unpacking r-cran-r6 (2.5.1-1) ... 425s Selecting previously unselected package r-cran-httr. 425s Preparing to unpack .../158-r-cran-httr_1.4.7+dfsg-1_all.deb ... 425s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 425s Selecting previously unselected package r-cran-png. 425s Preparing to unpack .../159-r-cran-png_0.1-8-1build2_amd64.deb ... 425s Unpacking r-cran-png (0.1-8-1build2) ... 425s Selecting previously unselected package r-bioc-zlibbioc. 425s Preparing to unpack .../160-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 425s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 425s Selecting previously unselected package r-bioc-xvector. 425s Preparing to unpack .../161-r-bioc-xvector_0.42.0-1_amd64.deb ... 425s Unpacking r-bioc-xvector (0.42.0-1) ... 425s Selecting previously unselected package r-cran-bitops. 425s Preparing to unpack .../162-r-cran-bitops_1.0-7-1_amd64.deb ... 425s Unpacking r-cran-bitops (1.0-7-1) ... 425s Selecting previously unselected package r-cran-rcurl. 425s Preparing to unpack .../163-r-cran-rcurl_1.98-1.14+dfsg-1build2_amd64.deb ... 425s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 425s Selecting previously unselected package r-bioc-genomeinfodbdata. 425s Preparing to unpack .../164-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 425s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 425s Selecting previously unselected package r-bioc-genomeinfodb. 425s Preparing to unpack .../165-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 425s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 425s Selecting previously unselected package r-cran-crayon. 425s Preparing to unpack .../166-r-cran-crayon_1.5.2-1_all.deb ... 426s Unpacking r-cran-crayon (1.5.2-1) ... 426s Selecting previously unselected package r-bioc-biostrings. 426s Preparing to unpack .../167-r-bioc-biostrings_2.70.2+dfsg-1_amd64.deb ... 426s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 426s Selecting previously unselected package r-bioc-keggrest. 426s Preparing to unpack .../168-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 426s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 426s Selecting previously unselected package r-bioc-annotationdbi. 426s Preparing to unpack .../169-r-bioc-annotationdbi_1.64.1-1_all.deb ... 426s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 426s Selecting previously unselected package r-cran-generics. 426s Preparing to unpack .../170-r-cran-generics_0.1.3-1_all.deb ... 426s Unpacking r-cran-generics (0.1.3-1) ... 426s Selecting previously unselected package r-cran-magrittr. 426s Preparing to unpack .../171-r-cran-magrittr_2.0.3-1_amd64.deb ... 426s Unpacking r-cran-magrittr (2.0.3-1) ... 426s Selecting previously unselected package r-cran-fansi. 426s Preparing to unpack .../172-r-cran-fansi_1.0.5-1_amd64.deb ... 426s Unpacking r-cran-fansi (1.0.5-1) ... 426s Selecting previously unselected package r-cran-utf8. 426s Preparing to unpack .../173-r-cran-utf8_1.2.4-1_amd64.deb ... 426s Unpacking r-cran-utf8 (1.2.4-1) ... 426s Selecting previously unselected package r-cran-pillar. 426s Preparing to unpack .../174-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 426s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 426s Selecting previously unselected package r-cran-tibble. 426s Preparing to unpack .../175-r-cran-tibble_3.2.1+dfsg-2_amd64.deb ... 426s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 426s Selecting previously unselected package r-cran-withr. 426s Preparing to unpack .../176-r-cran-withr_2.5.0-1_all.deb ... 426s Unpacking r-cran-withr (2.5.0-1) ... 426s Selecting previously unselected package r-cran-tidyselect. 426s Preparing to unpack .../177-r-cran-tidyselect_1.2.0+dfsg-1_amd64.deb ... 426s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 426s Selecting previously unselected package r-cran-dplyr. 426s Preparing to unpack .../178-r-cran-dplyr_1.1.4-1_amd64.deb ... 426s Unpacking r-cran-dplyr (1.1.4-1) ... 426s Selecting previously unselected package r-cran-purrr. 426s Preparing to unpack .../179-r-cran-purrr_1.0.2-1_amd64.deb ... 426s Unpacking r-cran-purrr (1.0.2-1) ... 426s Selecting previously unselected package r-cran-stringi. 426s Preparing to unpack .../180-r-cran-stringi_1.8.3-1_amd64.deb ... 426s Unpacking r-cran-stringi (1.8.3-1) ... 426s Selecting previously unselected package r-cran-stringr. 426s Preparing to unpack .../181-r-cran-stringr_1.5.1-1_all.deb ... 426s Unpacking r-cran-stringr (1.5.1-1) ... 426s Selecting previously unselected package r-cran-tidyr. 426s Preparing to unpack .../182-r-cran-tidyr_1.3.1-1_amd64.deb ... 426s Unpacking r-cran-tidyr (1.3.1-1) ... 426s Selecting previously unselected package r-cran-dbplyr. 426s Preparing to unpack .../183-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 426s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 426s Selecting previously unselected package r-cran-filelock. 426s Preparing to unpack .../184-r-cran-filelock_1.0.3-1_amd64.deb ... 426s Unpacking r-cran-filelock (1.0.3-1) ... 426s Selecting previously unselected package r-bioc-biocfilecache. 426s Preparing to unpack .../185-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 426s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 426s Selecting previously unselected package r-bioc-biocio. 426s Preparing to unpack .../186-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 426s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 426s Selecting previously unselected package r-cran-formatr. 426s Preparing to unpack .../187-r-cran-formatr_1.14-1_all.deb ... 426s Unpacking r-cran-formatr (1.14-1) ... 426s Selecting previously unselected package r-cran-lambda.r. 426s Preparing to unpack .../188-r-cran-lambda.r_1.2.4-2build1_all.deb ... 426s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 426s Selecting previously unselected package r-cran-futile.options. 426s Preparing to unpack .../189-r-cran-futile.options_1.0.1-3build1_all.deb ... 426s Unpacking r-cran-futile.options (1.0.1-3build1) ... 426s Selecting previously unselected package r-cran-futile.logger. 426s Preparing to unpack .../190-r-cran-futile.logger_1.4.3-4build1_all.deb ... 426s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 426s Selecting previously unselected package r-cran-snow. 426s Preparing to unpack .../191-r-cran-snow_1%3a0.4.4-2_all.deb ... 426s Unpacking r-cran-snow (1:0.4.4-2) ... 426s Selecting previously unselected package r-cran-codetools. 426s Preparing to unpack .../192-r-cran-codetools_0.2-19-1_all.deb ... 426s Unpacking r-cran-codetools (0.2-19-1) ... 426s Selecting previously unselected package r-cran-bh. 426s Preparing to unpack .../193-r-cran-bh_1.84.0-1_all.deb ... 426s Unpacking r-cran-bh (1.84.0-1) ... 426s Selecting previously unselected package r-bioc-biocparallel. 426s Preparing to unpack .../194-r-bioc-biocparallel_1.36.0-1_amd64.deb ... 426s Unpacking r-bioc-biocparallel (1.36.0-1) ... 426s Selecting previously unselected package r-cran-base64enc. 426s Preparing to unpack .../195-r-cran-base64enc_0.1-3-3_amd64.deb ... 426s Unpacking r-cran-base64enc (0.1-3-3) ... 426s Selecting previously unselected package r-cran-digest. 426s Preparing to unpack .../196-r-cran-digest_0.6.34-1_amd64.deb ... 426s Unpacking r-cran-digest (0.6.34-1) ... 426s Selecting previously unselected package r-cran-ellipsis. 426s Preparing to unpack .../197-r-cran-ellipsis_0.3.2-2_amd64.deb ... 426s Unpacking r-cran-ellipsis (0.3.2-2) ... 426s Selecting previously unselected package r-cran-htmltools. 426s Preparing to unpack .../198-r-cran-htmltools_0.5.7-1_amd64.deb ... 426s Unpacking r-cran-htmltools (0.5.7-1) ... 426s Selecting previously unselected package r-cran-evaluate. 426s Preparing to unpack .../199-r-cran-evaluate_0.23-1_all.deb ... 426s Unpacking r-cran-evaluate (0.23-1) ... 426s Selecting previously unselected package r-cran-xfun. 426s Preparing to unpack .../200-r-cran-xfun_0.41+dfsg-1_amd64.deb ... 426s Unpacking r-cran-xfun (0.41+dfsg-1) ... 426s Selecting previously unselected package r-cran-highr. 426s Preparing to unpack .../201-r-cran-highr_0.10+dfsg-1_all.deb ... 426s Unpacking r-cran-highr (0.10+dfsg-1) ... 426s Selecting previously unselected package r-cran-yaml. 426s Preparing to unpack .../202-r-cran-yaml_2.3.8-1_amd64.deb ... 426s Unpacking r-cran-yaml (2.3.8-1) ... 426s Selecting previously unselected package libjs-mathjax. 426s Preparing to unpack .../203-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 426s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 426s Selecting previously unselected package r-cran-knitr. 426s Preparing to unpack .../204-r-cran-knitr_1.45+dfsg-1_all.deb ... 426s Unpacking r-cran-knitr (1.45+dfsg-1) ... 426s Selecting previously unselected package r-cran-jquerylib. 426s Preparing to unpack .../205-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 426s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 426s Selecting previously unselected package r-cran-fs. 426s Preparing to unpack .../206-r-cran-fs_1.6.3+dfsg-1build2_amd64.deb ... 426s Unpacking r-cran-fs (1.6.3+dfsg-1build2) ... 426s Selecting previously unselected package r-cran-rappdirs. 426s Preparing to unpack .../207-r-cran-rappdirs_0.3.3-1_amd64.deb ... 426s Unpacking r-cran-rappdirs (0.3.3-1) ... 426s Selecting previously unselected package r-cran-sass. 426s Preparing to unpack .../208-r-cran-sass_0.4.8+dfsg-1_amd64.deb ... 426s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 426s Selecting previously unselected package r-cran-bslib. 427s Preparing to unpack .../209-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 427s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 427s Selecting previously unselected package r-cran-fontawesome. 427s Preparing to unpack .../210-r-cran-fontawesome_0.5.2-1_all.deb ... 427s Unpacking r-cran-fontawesome (0.5.2-1) ... 427s Selecting previously unselected package r-cran-tinytex. 427s Preparing to unpack .../211-r-cran-tinytex_0.49-1_all.deb ... 427s Unpacking r-cran-tinytex (0.49-1) ... 427s Selecting previously unselected package libjs-modernizr. 427s Preparing to unpack .../212-libjs-modernizr_2.6.2+ds1-5_all.deb ... 427s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 427s Selecting previously unselected package r-cran-pkgkitten. 427s Preparing to unpack .../213-r-cran-pkgkitten_0.2.3-1_all.deb ... 427s Unpacking r-cran-pkgkitten (0.2.3-1) ... 427s Selecting previously unselected package r-cran-rcpp. 427s Preparing to unpack .../214-r-cran-rcpp_1.0.12-1_amd64.deb ... 427s Unpacking r-cran-rcpp (1.0.12-1) ... 427s Selecting previously unselected package r-cran-later. 427s Preparing to unpack .../215-r-cran-later_1.3.2+dfsg-1_amd64.deb ... 427s Unpacking r-cran-later (1.3.2+dfsg-1) ... 427s Selecting previously unselected package r-cran-promises. 427s Preparing to unpack .../216-r-cran-promises_1.2.1+dfsg-1_amd64.deb ... 427s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 427s Selecting previously unselected package r-cran-httpuv. 427s Preparing to unpack .../217-r-cran-httpuv_1.6.14+dfsg-1build2_amd64.deb ... 427s Unpacking r-cran-httpuv (1.6.14+dfsg-1build2) ... 427s Selecting previously unselected package r-cran-xtable. 427s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 427s Unpacking r-cran-xtable (1:1.8-4-2) ... 430s Selecting previously unselected package r-cran-sourcetools. 430s Preparing to unpack .../219-r-cran-sourcetools_0.1.7-1-1_amd64.deb ... 430s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 430s Selecting previously unselected package r-cran-commonmark. 430s Preparing to unpack .../220-r-cran-commonmark_1.9.1-1_amd64.deb ... 430s Unpacking r-cran-commonmark (1.9.1-1) ... 430s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 430s Preparing to unpack .../221-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 430s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 430s Selecting previously unselected package r-cran-shiny. 430s Preparing to unpack .../222-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 430s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 430s Selecting previously unselected package r-cran-rmarkdown. 430s Preparing to unpack .../223-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 430s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 430s Selecting previously unselected package r-cran-bookdown. 430s Preparing to unpack .../224-r-cran-bookdown_0.37+dfsg-1_all.deb ... 430s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 430s Selecting previously unselected package r-cran-biocmanager. 430s Preparing to unpack .../225-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 430s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 430s Selecting previously unselected package tex-common. 430s Preparing to unpack .../226-tex-common_6.18_all.deb ... 430s Unpacking tex-common (6.18) ... 430s Selecting previously unselected package t1utils. 430s Preparing to unpack .../227-t1utils_1.41-4build2_amd64.deb ... 430s Unpacking t1utils (1.41-4build2) ... 430s Selecting previously unselected package texlive-binaries. 430s Preparing to unpack .../228-texlive-binaries_2023.20230311.66589-9build3_amd64.deb ... 430s Unpacking texlive-binaries (2023.20230311.66589-9build3) ... 430s Selecting previously unselected package texlive-base. 430s Preparing to unpack .../229-texlive-base_2023.20240207-1_all.deb ... 430s Unpacking texlive-base (2023.20240207-1) ... 430s Selecting previously unselected package texlive-latex-base. 430s Preparing to unpack .../230-texlive-latex-base_2023.20240207-1_all.deb ... 430s Unpacking texlive-latex-base (2023.20240207-1) ... 430s Selecting previously unselected package texlive-bibtex-extra. 430s Preparing to unpack .../231-texlive-bibtex-extra_2023.20240207-1_all.deb ... 430s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 436s Selecting previously unselected package r-bioc-biocstyle. 436s Preparing to unpack .../232-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 436s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 436s Selecting previously unselected package r-cran-xml. 436s Preparing to unpack .../233-r-cran-xml_3.99-0.16.1-1_amd64.deb ... 436s Unpacking r-cran-xml (3.99-0.16.1-1) ... 436s Selecting previously unselected package r-cran-hms. 436s Preparing to unpack .../234-r-cran-hms_1.1.3-1_all.deb ... 436s Unpacking r-cran-hms (1.1.3-1) ... 436s Selecting previously unselected package r-cran-prettyunits. 436s Preparing to unpack .../235-r-cran-prettyunits_1.2.0-1_all.deb ... 436s Unpacking r-cran-prettyunits (1.2.0-1) ... 436s Selecting previously unselected package r-cran-progress. 436s Preparing to unpack .../236-r-cran-progress_1.2.3-1_all.deb ... 436s Unpacking r-cran-progress (1.2.3-1) ... 436s Selecting previously unselected package r-cran-xml2. 436s Preparing to unpack .../237-r-cran-xml2_1.3.6-1_amd64.deb ... 436s Unpacking r-cran-xml2 (1.3.6-1) ... 436s Selecting previously unselected package r-bioc-biomart. 436s Preparing to unpack .../238-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 436s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 436s Selecting previously unselected package r-cran-lattice. 436s Preparing to unpack .../239-r-cran-lattice_0.22-5-1_amd64.deb ... 436s Unpacking r-cran-lattice (0.22-5-1) ... 436s Selecting previously unselected package r-cran-matrix. 436s Preparing to unpack .../240-r-cran-matrix_1.6-5-1_amd64.deb ... 436s Unpacking r-cran-matrix (1.6-5-1) ... 436s Selecting previously unselected package r-cran-matrixstats. 436s Preparing to unpack .../241-r-cran-matrixstats_1.2.0-1_amd64.deb ... 436s Unpacking r-cran-matrixstats (1.2.0-1) ... 436s Selecting previously unselected package r-bioc-matrixgenerics. 436s Preparing to unpack .../242-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 436s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 436s Selecting previously unselected package r-cran-abind. 436s Preparing to unpack .../243-r-cran-abind_1.4-5-2_all.deb ... 436s Unpacking r-cran-abind (1.4-5-2) ... 436s Selecting previously unselected package r-bioc-s4arrays. 436s Preparing to unpack .../244-r-bioc-s4arrays_1.2.0+dfsg-1_amd64.deb ... 436s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 436s Selecting previously unselected package r-bioc-sparsearray. 436s Preparing to unpack .../245-r-bioc-sparsearray_1.2.4+dfsg-1_amd64.deb ... 436s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 436s Selecting previously unselected package r-bioc-delayedarray. 436s Preparing to unpack .../246-r-bioc-delayedarray_0.28.0+dfsg-1_amd64.deb ... 436s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 436s Selecting previously unselected package r-bioc-genomicranges. 436s Preparing to unpack .../247-r-bioc-genomicranges_1.54.1+dfsg-1_amd64.deb ... 436s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 436s Selecting previously unselected package r-bioc-summarizedexperiment. 436s Preparing to unpack .../248-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 436s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 436s Selecting previously unselected package r-bioc-rhtslib. 436s Preparing to unpack .../249-r-bioc-rhtslib_2.4.1+dfsg-3build2_amd64.deb ... 436s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 436s Selecting previously unselected package r-bioc-rsamtools. 436s Preparing to unpack .../250-r-bioc-rsamtools_2.18.0+dfsg-1_amd64.deb ... 436s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 436s Selecting previously unselected package r-bioc-genomicalignments. 436s Preparing to unpack .../251-r-bioc-genomicalignments_1.38.2-1_amd64.deb ... 436s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 436s Selecting previously unselected package r-cran-rjson. 436s Preparing to unpack .../252-r-cran-rjson_0.2.21-1_amd64.deb ... 436s Unpacking r-cran-rjson (0.2.21-1) ... 436s Selecting previously unselected package r-cran-restfulr. 436s Preparing to unpack .../253-r-cran-restfulr_0.0.15-1_amd64.deb ... 436s Unpacking r-cran-restfulr (0.0.15-1) ... 436s Selecting previously unselected package r-bioc-rtracklayer. 436s Preparing to unpack .../254-r-bioc-rtracklayer_1.62.0-1_amd64.deb ... 436s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 436s Selecting previously unselected package r-bioc-genomicfeatures. 436s Preparing to unpack .../255-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 436s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 436s Selecting previously unselected package r-cran-hwriter. 436s Preparing to unpack .../256-r-cran-hwriter_1.3.2.1-1_all.deb ... 436s Unpacking r-cran-hwriter (1.3.2.1-1) ... 436s Selecting previously unselected package r-cran-jpeg. 436s Preparing to unpack .../257-r-cran-jpeg_0.1-10-1_amd64.deb ... 436s Unpacking r-cran-jpeg (0.1-10-1) ... 436s Selecting previously unselected package r-cran-rcolorbrewer. 436s Preparing to unpack .../258-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 436s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 436s Selecting previously unselected package r-cran-deldir. 436s Preparing to unpack .../259-r-cran-deldir_2.0-4-1build1_amd64.deb ... 436s Unpacking r-cran-deldir (2.0-4-1build1) ... 436s Selecting previously unselected package r-cran-rcppeigen. 436s Preparing to unpack .../260-r-cran-rcppeigen_0.3.4.0.0-1build1_amd64.deb ... 436s Unpacking r-cran-rcppeigen (0.3.4.0.0-1build1) ... 436s Selecting previously unselected package r-cran-interp. 436s Preparing to unpack .../261-r-cran-interp_1.1-6-1_amd64.deb ... 436s Unpacking r-cran-interp (1.1-6-1) ... 436s Selecting previously unselected package r-cran-mass. 436s Preparing to unpack .../262-r-cran-mass_7.3-60.0.1-1_amd64.deb ... 436s Unpacking r-cran-mass (7.3-60.0.1-1) ... 436s Selecting previously unselected package r-cran-latticeextra. 436s Preparing to unpack .../263-r-cran-latticeextra_0.6-30-1_all.deb ... 436s Unpacking r-cran-latticeextra (0.6-30-1) ... 436s Selecting previously unselected package r-bioc-shortread. 436s Preparing to unpack .../264-r-bioc-shortread_1.60.0-2_amd64.deb ... 436s Unpacking r-bioc-shortread (1.60.0-2) ... 436s Selecting previously unselected package r-cran-runit. 436s Preparing to unpack .../265-r-cran-runit_0.4.33-1_all.deb ... 436s Unpacking r-cran-runit (0.4.33-1) ... 436s Selecting previously unselected package autopkgtest-satdep. 436s Preparing to unpack .../266-1-autopkgtest-satdep.deb ... 436s Unpacking autopkgtest-satdep (0) ... 436s Setting up libjs-json (0~20221030+~1.0.8-1) ... 436s Setting up javascript-common (11+nmu1) ... 436s Setting up libgraphite2-3:amd64 (1.3.14-2) ... 436s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 436s Setting up libpaper1:amd64 (1.1.29) ... 436s 436s Creating config file /etc/papersize with new version 436s Setting up fontconfig (2.15.0-1.1ubuntu2) ... 437s Regenerating fonts cache... done. 437s Setting up libjpeg-turbo8-dev:amd64 (2.1.5-2ubuntu1) ... 437s Setting up libncurses-dev:amd64 (6.4+20240113-1ubuntu1) ... 437s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 437s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 437s Setting up libxi6:amd64 (2:1.8.1-1) ... 437s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 437s Setting up libdatrie1:amd64 (0.2.13-3) ... 437s Setting up libjs-popper.js (1.16.1+ds-6) ... 437s Setting up libxcb-render0:amd64 (1.15-1) ... 437s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 437s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 437s Setting up libjs-lunr (2.3.9~dfsg-2) ... 437s Setting up unzip (6.0-28ubuntu3) ... 437s Setting up liblatex-tounicode-perl (0.54-2) ... 437s Setting up x11-common (1:7.7+23ubuntu2) ... 437s Setting up node-html5shiv (3.7.3+dfsg-5) ... 437s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 437s Setting up libxcb-shm0:amd64 (1.15-1) ... 437s Setting up libpaper-utils (1.1.29) ... 437s Setting up libreadline-dev:amd64 (8.2-4build1) ... 437s Setting up libgomp1:amd64 (14-20240330-1ubuntu2) ... 437s Setting up libjs-modernizr (2.6.2+ds1-5) ... 437s Setting up libcairo2:amd64 (1.18.0-3) ... 437s Setting up libpcre2-16-0:amd64 (10.42-4ubuntu1) ... 437s Setting up libjs-es5-shim (4.6.7-2) ... 437s Setting up tex-common (6.18) ... 438s update-language: texlive-base not installed and configured, doing nothing! 438s Setting up libio-string-perl (1.08-4) ... 438s Setting up zip (3.0-13) ... 438s Setting up libpcre2-32-0:amd64 (10.42-4ubuntu1) ... 438s Setting up libblas3:amd64 (3.12.0-3) ... 438s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 438s Setting up libpkgconf3:amd64 (1.8.1-2) ... 438s Setting up gcc-13-base:amd64 (13.2.0-23ubuntu3) ... 438s Setting up libzzip-0-13t64:amd64 (0.13.72+dfsg.1-1.2build1) ... 438s Setting up libteckit0:amd64 (2.5.12+ds1-1) ... 438s Setting up t1utils (1.41-4build2) ... 438s Setting up libquadmath0:amd64 (14-20240330-1ubuntu2) ... 438s Setting up libtexlua53-5:amd64 (2023.20230311.66589-9build3) ... 438s Setting up libjs-d3 (3.5.17-4) ... 438s Setting up libmpc3:amd64 (1.3.1-1) ... 438s Setting up libatomic1:amd64 (14-20240330-1ubuntu2) ... 438s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 438s Setting up icu-devtools (74.2-1ubuntu1) ... 438s Setting up pkgconf-bin (1.8.1-2) ... 438s Setting up libkpathsea6:amd64 (2023.20230311.66589-9build3) ... 438s Setting up libgfortran5:amd64 (14-20240330-1ubuntu2) ... 438s Setting up liblzma-dev:amd64 (5.6.1+really5.4.5-1) ... 438s Setting up libubsan1:amd64 (14-20240330-1ubuntu2) ... 438s Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 438s Setting up libpcre2-posix3:amd64 (10.42-4ubuntu1) ... 438s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 438s Setting up libhwasan0:amd64 (14-20240330-1ubuntu2) ... 438s Setting up libasan8:amd64 (14-20240330-1ubuntu2) ... 438s Setting up fonts-lmodern (2.005-1) ... 438s Setting up liblua5.4-0:amd64 (5.4.6-3build2) ... 438s Setting up libharfbuzz0b:amd64 (8.3.0-2build2) ... 438s Setting up libthai-data (0.1.29-2) ... 438s Setting up node-bootstrap-sass (3.4.3-2) ... 438s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 438s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 438s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 438s Setting up pandoc-data (3.1.3-1) ... 438s Setting up libtsan2:amd64 (14-20240330-1ubuntu2) ... 438s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 438s Setting up libjpeg8-dev:amd64 (8c-2ubuntu11) ... 438s Setting up libisl23:amd64 (0.26-3) ... 438s Setting up node-normalize.css (8.0.1-5) ... 438s Setting up libicu-dev:amd64 (74.2-1ubuntu1) ... 438s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 438s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 438s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 438s Setting up libcc1-0:amd64 (14-20240330-1ubuntu2) ... 438s Setting up liblsan0:amd64 (14-20240330-1ubuntu2) ... 438s Setting up libblas-dev:amd64 (3.12.0-3) ... 438s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode 438s Setting up dctrl-tools (2.24-3build2) ... 438s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 438s Setting up libitm1:amd64 (14-20240330-1ubuntu2) ... 438s Setting up libsynctex2:amd64 (2023.20230311.66589-9build3) ... 438s Setting up libbz2-dev:amd64 (1.0.8-5ubuntu1) ... 438s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 438s Setting up libpotrace0:amd64 (1.16-2) ... 438s Setting up libice6:amd64 (2:1.0.10-1build2) ... 438s Setting up liblapack3:amd64 (3.12.0-3) ... 438s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 438s Setting up libxft2:amd64 (2.3.6-1) ... 438s Setting up libpcre2-dev:amd64 (10.42-4ubuntu1) ... 438s Setting up cpp-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 438s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 438s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 438s Setting up libpng-dev:amd64 (1.6.43-5build1) ... 438s Setting up libjpeg-dev:amd64 (8c-2ubuntu11) ... 438s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 438s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 438s Setting up pkgconf:amd64 (1.8.1-2) ... 438s Setting up libthai0:amd64 (0.1.29-2) ... 438s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 438s Setting up libptexenc1:amd64 (2023.20230311.66589-9build3) ... 438s Setting up pandoc (3.1.3+ds-2) ... 438s Setting up liblapack-dev:amd64 (3.12.0-3) ... 438s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode 438s Setting up pkg-config:amd64 (1.8.1-2) ... 438s Setting up libgcc-13-dev:amd64 (13.2.0-23ubuntu3) ... 438s Setting up libgfortran-13-dev:amd64 (13.2.0-23ubuntu3) ... 438s Setting up libsm6:amd64 (2:1.2.3-1build2) ... 438s Setting up libstdc++-13-dev:amd64 (13.2.0-23ubuntu3) ... 438s Setting up cpp-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 438s Setting up libboost1.83-dev:amd64 (1.83.0-2.1ubuntu3) ... 438s Setting up cpp-13 (13.2.0-23ubuntu3) ... 438s Setting up gcc-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 438s Setting up libpango-1.0-0:amd64 (1.52.1+ds-1build1) ... 438s Setting up gfortran-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 438s Setting up libxt6t64:amd64 (1:1.2.1-1.2build1) ... 438s Setting up gcc-13 (13.2.0-23ubuntu3) ... 438s Setting up cpp (4:13.2.0-7ubuntu1) ... 438s Setting up libboost-dev:amd64 (1.83.0.1ubuntu2) ... 438s Setting up libpangoft2-1.0-0:amd64 (1.52.1+ds-1build1) ... 438s Setting up libpangocairo-1.0-0:amd64 (1.52.1+ds-1build1) ... 438s Setting up libxmu6:amd64 (2:1.1.3-3build2) ... 438s Setting up g++-13-x86-64-linux-gnu (13.2.0-23ubuntu3) ... 438s Setting up gcc-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 438s Setting up libxaw7:amd64 (2:1.0.14-1build2) ... 438s Setting up gfortran-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 438s Setting up gcc (4:13.2.0-7ubuntu1) ... 438s Setting up gfortran-13 (13.2.0-23ubuntu3) ... 438s Setting up r-base-core (4.3.3-2build2) ... 438s 438s Creating config file /etc/R/Renviron with new version 438s Setting up r-cran-crayon (1.5.2-1) ... 438s Setting up r-cran-sourcetools (0.1.7-1-1) ... 438s Setting up r-cran-futile.options (1.0.1-3build1) ... 438s Setting up r-cran-lattice (0.22-5-1) ... 438s Setting up r-cran-formatr (1.14-1) ... 438s Setting up r-cran-xml (3.99-0.16.1-1) ... 438s Setting up texlive-binaries (2023.20230311.66589-9build3) ... 438s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 438s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 438s Setting up g++-x86-64-linux-gnu (4:13.2.0-7ubuntu1) ... 438s Setting up r-cran-commonmark (1.9.1-1) ... 438s Setting up r-cran-r6 (2.5.1-1) ... 438s Setting up r-cran-pkgkitten (0.2.3-1) ... 438s Setting up r-cran-jpeg (0.1-10-1) ... 438s Setting up texlive-base (2023.20240207-1) ... 439s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 439s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 439s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 439s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 440s Setting up r-cran-magrittr (2.0.3-1) ... 440s Setting up r-cran-rappdirs (0.3.3-1) ... 440s Setting up r-cran-filelock (1.0.3-1) ... 440s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 440s Setting up r-cran-littler (0.3.19-1) ... 440s Setting up r-cran-bh (1.84.0-1) ... 440s Setting up r-cran-fs (1.6.3+dfsg-1build2) ... 440s Setting up r-cran-rcpp (1.0.12-1) ... 440s Setting up r-cran-curl (5.2.0+dfsg-1build2) ... 440s Setting up r-cran-codetools (0.2-19-1) ... 440s Setting up g++-13 (13.2.0-23ubuntu3) ... 440s Setting up r-bioc-biocgenerics (0.48.1-2) ... 440s Setting up r-cran-rlang (1.1.3-1) ... 440s Setting up r-cran-matrixstats (1.2.0-1) ... 440s Setting up littler (0.3.19-1) ... 440s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 440s Setting up r-cran-xfun (0.41+dfsg-1) ... 440s Setting up r-cran-sys (3.4.2-1) ... 440s Setting up r-cran-plogr (0.2.0-3build1) ... 440s Setting up r-cran-withr (2.5.0-1) ... 440s Setting up r-cran-mime (0.12-1) ... 440s Setting up r-cran-generics (0.1.3-1) ... 440s Setting up r-cran-base64enc (0.1-3-3) ... 440s Setting up r-cran-abind (1.4-5-2) ... 440s Setting up r-cran-digest (0.6.34-1) ... 440s Setting up r-cran-yaml (2.3.8-1) ... 440s Setting up r-cran-lambda.r (1.2.4-2build1) ... 440s Setting up r-cran-evaluate (0.23-1) ... 440s Setting up r-cran-dbi (1.2.2-1) ... 440s Setting up r-cran-highr (0.10+dfsg-1) ... 440s Setting up r-cran-prettyunits (1.2.0-1) ... 440s Setting up r-cran-fansi (1.0.5-1) ... 440s Setting up r-cran-mass (7.3-60.0.1-1) ... 440s Setting up r-cran-snow (1:0.4.4-2) ... 440s Setting up r-cran-glue (1.7.0-1) ... 440s Setting up r-cran-bit (4.0.5-1) ... 440s Setting up r-cran-xtable (1:1.8-4-2) ... 440s Setting up r-cran-cli (3.6.2-1) ... 440s Setting up gfortran (4:13.2.0-7ubuntu1) ... 440s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 440s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 440s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 440s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 440s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 440s Setting up r-cran-bitops (1.0-7-1) ... 440s Setting up r-cran-bit64 (4.0.5-1) ... 440s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 440s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 440s Setting up r-cran-deldir (2.0-4-1build1) ... 440s Setting up r-cran-askpass (1.2.0-1) ... 440s Setting up r-cran-fastmap (1.1.1-1) ... 440s Setting up r-cran-png (0.1-8-1build2) ... 440s Setting up r-bioc-biobase (2.62.0-1) ... 440s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 440s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 440s Setting up r-cran-utf8 (1.2.4-1) ... 440s Setting up r-cran-stringi (1.8.3-1) ... 440s Setting up texlive-latex-base (2023.20240207-1) ... 440s Setting up r-cran-hwriter (1.3.2.1-1) ... 440s Setting up r-cran-cpp11 (0.4.7-1) ... 440s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 440s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 440s Setting up r-cran-runit (0.4.33-1) ... 440s Setting up r-cran-futile.logger (1.4.3-4build1) ... 440s Setting up r-cran-later (1.3.2+dfsg-1) ... 440s Setting up r-cran-matrix (1.6-5-1) ... 440s Setting up r-cran-tinytex (0.49-1) ... 440s Setting up r-cran-knitr (1.45+dfsg-1) ... 440s Setting up g++ (4:13.2.0-7ubuntu1) ... 440s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 440s Setting up r-cran-cachem (1.0.8-1) ... 440s Setting up build-essential (12.10ubuntu1) ... 440s Setting up r-bioc-iranges (2.36.0-1) ... 440s Setting up r-cran-rjson (0.2.21-1) ... 440s Setting up r-cran-rcurl (1.98-1.14+dfsg-1build2) ... 440s Setting up r-cran-restfulr (0.0.15-1) ... 440s Setting up r-cran-vctrs (0.6.5-1) ... 440s Setting up r-cran-rcppeigen (0.3.4.0.0-1build1) ... 440s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 440s Setting up r-cran-ellipsis (0.3.2-2) ... 440s Setting up r-cran-openssl (2.1.1+dfsg-2build2) ... 440s Setting up r-base-dev (4.3.3-2build2) ... 440s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 440s Setting up r-cran-stringr (1.5.1-1) ... 440s Setting up r-bioc-biocparallel (1.36.0-1) ... 440s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build2) ... 440s Setting up r-cran-xml2 (1.3.6-1) ... 440s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 440s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 440s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 440s Setting up texlive-bibtex-extra (2023.20240207-1) ... 440s Setting up r-cran-interp (1.1-6-1) ... 440s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 440s Setting up r-cran-httr (1.4.7+dfsg-1) ... 440s Setting up r-cran-hms (1.1.3-1) ... 440s Setting up r-cran-memoise (2.0.1-1) ... 440s Setting up r-cran-promises (1.2.1+dfsg-1) ... 440s Setting up r-cran-purrr (1.0.2-1) ... 440s Setting up r-cran-blob (1.2.4-1) ... 440s Setting up r-cran-htmltools (0.5.7-1) ... 440s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 440s Setting up r-bioc-xvector (0.42.0-1) ... 440s Setting up r-cran-sass (0.4.8+dfsg-1) ... 440s Setting up r-cran-dplyr (1.1.4-1) ... 440s Setting up r-cran-rsqlite (2.3.4-1) ... 440s Setting up r-cran-progress (1.2.3-1) ... 440s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 440s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 440s Setting up r-cran-httpuv (1.6.14+dfsg-1build2) ... 440s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 440s Setting up r-cran-fontawesome (0.5.2-1) ... 440s Setting up r-cran-latticeextra (0.6-30-1) ... 440s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 440s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 440s Setting up r-cran-tidyr (1.3.1-1) ... 440s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 440s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 440s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 440s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 440s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 440s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 440s Setting up r-bioc-annotationdbi (1.64.1-1) ... 440s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 440s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 440s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 440s Setting up r-bioc-genomicalignments (1.38.2-1) ... 440s Setting up r-cran-bookdown (0.37+dfsg-1) ... 440s Setting up r-bioc-rtracklayer (1.62.0-1) ... 440s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 440s Setting up r-bioc-shortread (1.60.0-2) ... 440s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 440s Setting up autopkgtest-satdep (0) ... 440s Processing triggers for man-db (2.12.0-4build1) ... 441s Processing triggers for install-info (7.1-3build2) ... 441s Processing triggers for libc-bin (2.39-0ubuntu8) ... 441s Processing triggers for tex-common (6.18) ... 441s Running updmap-sys. This may take some time... done. 441s Running mktexlsr /var/lib/texmf ... done. 442s Building format(s) --all. 471s This may take some time... done. 481s (Reading database ... 122180 files and directories currently installed.) 481s Removing autopkgtest-satdep (0) ... 481s autopkgtest [16:48:48]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 481s autopkgtest [16:48:48]: test pkg-r-autopkgtest: [----------------------- 481s Test: Try to load the R library Rsamtools 481s 481s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 481s Copyright (C) 2024 The R Foundation for Statistical Computing 481s Platform: x86_64-pc-linux-gnu (64-bit) 481s 481s R is free software and comes with ABSOLUTELY NO WARRANTY. 481s You are welcome to redistribute it under certain conditions. 481s Type 'license()' or 'licence()' for distribution details. 481s 481s R is a collaborative project with many contributors. 481s Type 'contributors()' for more information and 481s 'citation()' on how to cite R or R packages in publications. 481s 481s Type 'demo()' for some demos, 'help()' for on-line help, or 481s 'help.start()' for an HTML browser interface to help. 481s Type 'q()' to quit R. 481s 481s > library('Rsamtools') 481s Loading required package: GenomeInfoDb 481s Loading required package: BiocGenerics 481s 481s Attaching package: ‘BiocGenerics’ 481s 481s The following objects are masked from ‘package:stats’: 481s 481s IQR, mad, sd, var, xtabs 481s 481s The following objects are masked from ‘package:base’: 481s 481s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 481s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 481s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 481s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 481s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 481s table, tapply, union, unique, unsplit, which.max, which.min 481s 481s Loading required package: S4Vectors 481s Loading required package: stats4 485s 485s Attaching package: ‘S4Vectors’ 485s 485s The following object is masked from ‘package:utils’: 485s 485s findMatches 485s 485s > The following objects are masked from ‘package:base’: 485s 485s expand.grid, I, unname 485s 485s Loading required package: IRanges 485s Loading required package: GenomicRanges 485s Loading required package: Biostrings 485s Loading required package: XVector 485s 485s Attaching package: ‘Biostrings’ 485s 485s The following object is masked from ‘package:base’: 485s 485s strsplit 485s 485s autopkgtest [16:48:52]: test pkg-r-autopkgtest: -----------------------] 485s 485s > 485s Other tests are currently unsupported! 485s They will be progressively added. 485s autopkgtest [16:48:52]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 485s pkg-r-autopkgtest PASS 485s autopkgtest [16:48:52]: @@@@@@@@@@@@@@@@@@@@ summary 485s pkg-r-autopkgtest PASS 498s Creating nova instance adt-noble-amd64-r-bioc-rsamtools-20240409-164047-juju-7f2275-prod-proposed-migration-environment-3-5ad83f7a-0b54-4699-ac63-1b6d412b8b26 from image adt/ubuntu-noble-amd64-server-20240409.img (UUID 3fc5ec4a-a752-4d16-a177-712062b74bd0)...