0s autopkgtest [22:36:32]: starting date and time: 2024-03-23 22:36:32+0000 0s autopkgtest [22:36:32]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [22:36:32]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.6rhirr7h/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:python3-stdlib-extensions,src:gdbm --apt-upgrade python-pauvre --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=python3-stdlib-extensions/3.12.2-3ubuntu1.1 gdbm/1.23-5.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-11.secgroup --name adt-noble-amd64-python-pauvre-20240323-223631-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 90s autopkgtest [22:38:02]: testbed dpkg architecture: amd64 90s autopkgtest [22:38:02]: testbed apt version: 2.7.12 90s autopkgtest [22:38:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 90s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 91s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 91s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3966 kB] 91s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [494 kB] 91s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.9 kB] 91s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [452 kB] 91s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [688 kB] 91s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 91s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B] 91s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [30.5 kB] 91s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 91s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1308 kB] 91s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4405 kB] 91s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 91s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [27.1 kB] 91s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.1 kB] 91s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 94s Fetched 11.7 MB in 2s (7739 kB/s) 94s Reading package lists... 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 99s Calculating upgrade... 99s The following packages will be REMOVED: 99s libgdbm6 99s The following NEW packages will be installed: 99s libgdbm6t64 99s The following packages will be upgraded: 99s libc-bin libc6 locales python3-distutils python3-gdbm python3-lib2to3 99s 6 upgraded, 1 newly installed, 1 to remove and 0 not upgraded. 99s Need to get 8442 kB of archives. 99s After this operation, 9216 B of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 libc6 amd64 2.39-0ubuntu6 [3262 kB] 99s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libc-bin amd64 2.39-0ubuntu6 [682 kB] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-gdbm amd64 3.12.2-3ubuntu1.1 [18.7 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgdbm6t64 amd64 1.23-5.1 [34.4 kB] 99s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 locales all 2.39-0ubuntu6 [4232 kB] 99s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-distutils all 3.12.2-3ubuntu1.1 [133 kB] 99s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 python3-lib2to3 all 3.12.2-3ubuntu1.1 [79.1 kB] 99s Preconfiguring packages ... 99s Fetched 8442 kB in 0s (103 MB/s) 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 99s Preparing to unpack .../libc6_2.39-0ubuntu6_amd64.deb ... 99s Unpacking libc6:amd64 (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 99s Setting up libc6:amd64 (2.39-0ubuntu6) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 99s Preparing to unpack .../libc-bin_2.39-0ubuntu6_amd64.deb ... 99s Unpacking libc-bin (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 99s Setting up libc-bin (2.39-0ubuntu6) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 99s Preparing to unpack .../python3-gdbm_3.12.2-3ubuntu1.1_amd64.deb ... 99s Unpacking python3-gdbm:amd64 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 99s dpkg: libgdbm6:amd64: dependency problems, but removing anyway as you requested: 99s man-db depends on libgdbm6 (>= 1.16). 99s libperl5.38:amd64 depends on libgdbm6 (>= 1.21). 99s libgdbm-compat4:amd64 depends on libgdbm6 (>= 1.16). 99s 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71864 files and directories currently installed.) 99s Removing libgdbm6:amd64 (1.23-5) ... 99s Selecting previously unselected package libgdbm6t64:amd64. 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71859 files and directories currently installed.) 99s Preparing to unpack .../libgdbm6t64_1.23-5.1_amd64.deb ... 99s Unpacking libgdbm6t64:amd64 (1.23-5.1) ... 99s Preparing to unpack .../locales_2.39-0ubuntu6_all.deb ... 99s Unpacking locales (2.39-0ubuntu6) over (2.39-0ubuntu2) ... 99s Preparing to unpack .../python3-distutils_3.12.2-3ubuntu1.1_all.deb ... 99s Unpacking python3-distutils (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 99s Preparing to unpack .../python3-lib2to3_3.12.2-3ubuntu1.1_all.deb ... 99s Unpacking python3-lib2to3 (3.12.2-3ubuntu1.1) over (3.11.5-1) ... 99s Setting up libgdbm6t64:amd64 (1.23-5.1) ... 99s Setting up python3-gdbm:amd64 (3.12.2-3ubuntu1.1) ... 99s Setting up locales (2.39-0ubuntu6) ... 100s Generating locales (this might take a while)... 104s en_US.UTF-8... done 104s Generation complete. 104s sh: Attempting to set up Debian/Ubuntu apt sources automatically 104s Setting up python3-lib2to3 (3.12.2-3ubuntu1.1) ... 104s Setting up python3-distutils (3.12.2-3ubuntu1.1) ... 104s python3.12: can't get files for byte-compilation 104s Processing triggers for man-db (2.12.0-3) ... 104s Processing triggers for libc-bin (2.39-0ubuntu6) ... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists...sh: Distribution appears to be Ubuntu 105s 105s Building dependency tree... 105s Reading state information... 105s eatmydata is already the newest version (131-1). 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s dbus is already the newest version (1.14.10-4ubuntu1). 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s rng-tools-debian is already the newest version (2.4). 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 107s The following packages will be REMOVED: 107s cloud-init* python3-configobj* python3-debconf* 107s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 107s After this operation, 3256 kB disk space will be freed. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71865 files and directories currently installed.) 107s Removing cloud-init (24.1.2-0ubuntu1) ... 108s Removing python3-configobj (5.0.8-3) ... 108s Removing python3-debconf (1.5.86) ... 108s Processing triggers for man-db (2.12.0-3) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71476 files and directories currently installed.) 108s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 109s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 109s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 109s invoke-rc.d: policy-rc.d denied execution of try-restart. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 110s linux-generic is already the newest version (6.8.0-11.11+1). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s autopkgtest [22:38:25]: rebooting testbed after setup commands that affected boot 131s autopkgtest [22:38:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024 132s autopkgtest [22:38:44]: @@@@@@@@@@@@@@@@@@@@ apt-source python-pauvre 133s Get:1 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (dsc) [2485 B] 133s Get:2 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (tar) [61.9 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble/universe python-pauvre 0.2.3-3 (diff) [7968 B] 133s gpgv: Signature made Wed Sep 6 20:23:37 2023 UTC 133s gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA 133s gpgv: issuer "emollier@debian.org" 133s gpgv: Can't check signature: No public key 133s dpkg-source: warning: cannot verify inline signature for ./python-pauvre_0.2.3-3.dsc: no acceptable signature found 133s autopkgtest [22:38:45]: testing package python-pauvre version 0.2.3-3 133s autopkgtest [22:38:45]: build not needed 133s autopkgtest [22:38:45]: test run-unit-test: preparing testbed 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s Starting pkgProblemResolver with broken count: 0 136s Starting 2 pkgProblemResolver with broken count: 0 136s Done 136s The following additional packages will be installed: 136s blt fontconfig-config fonts-dejavu-core fonts-dejavu-extra fonts-dejavu-mono 136s fonts-lyx fonts-urw-base35 libblas3 libcairo2 libdeflate0 libfontconfig1 136s libfontenc1 libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 136s libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 libjs-jquery libjs-jquery-ui 136s liblapack3 liblbfgsb0 liblcms2-2 liblerc4 libopenjp2-7 libpixman-1-0 136s libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 libtiff6 libtk8.6 libwebp7 136s libwebpdemux2 libwebpmux3 libxcb-render0 libxcb-shm0 libxft2 libxrender1 136s libxslt1.1 libxss1 python-matplotlib-data python3-appdirs python3-biopython 136s python3-brotli python3-cairo python3-contourpy python3-cycler 136s python3-dateutil python3-decorator python3-fonttools python3-freetype 136s python3-fs python3-joblib python3-kiwisolver python3-lxml python3-lz4 136s python3-matplotlib python3-mpmath python3-nanoget-examples python3-numpy 136s python3-packaging python3-pandas python3-pandas-lib python3-pauvre 136s python3-pil python3-pil.imagetk python3-reportlab python3-rlpycairo 136s python3-scipy python3-sklearn python3-sklearn-lib python3-sympy 136s python3-threadpoolctl python3-tk python3-ufolib2 python3-unicodedata2 136s sgml-base tk8.6-blt2.5 unicode-data w3c-sgml-lib x11-common xfonts-encodings 136s xfonts-utils xml-core 136s Suggested packages: 136s blt-demo fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 136s libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 bwa clustalo clustalw 136s dialign dssp emboss fasttree mafft muscle3 phylip phyml prank probcons 136s python3-mysqldb python3-mmtf python3-rdflib python3-psycopg2 raxml samtools 136s t-coffee wise python-cycler-doc python-lxml-doc cm-super-minimal dvipng 136s ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0 inkscape ipython3 136s librsvg2-common python3-cairocffi python3-gi-cairo python3-gobject 136s python3-pyqt5 python3-sip python3-tornado texlive-extra-utils 136s texlive-latex-extra python-mpmath-doc python3-gmpy2 gcc gfortran python3-dev 136s python3-pytest python-pandas-doc python3-statsmodels python-pil-doc 136s pdf-viewer python3-egenix-mxtexttools python-reportlab-doc rl-accel 136s rl-renderpm python-scipy-doc python3-dap python-sklearn-doc 136s texlive-fonts-extra python-sympy-doc tix python3-tk-dbg sgml-base-doc 136s debhelper 136s Recommended packages: 136s javascript-common python-biopython-doc ncbi-blast+ python3-pytest 136s python3-simplejson python3-psutil python3-bs4 python3-cssselect 136s python3-html5lib python3-bottleneck python3-numexpr python3-odf 136s python3-openpyxl python3-tables python3-numba python3-olefile g++ 136s | c++-compiler isympy-common 136s The following NEW packages will be installed: 136s autopkgtest-satdep blt fontconfig-config fonts-dejavu-core 136s fonts-dejavu-extra fonts-dejavu-mono fonts-lyx fonts-urw-base35 libblas3 136s libcairo2 libdeflate0 libfontconfig1 libfontenc1 libgfortran5 libgomp1 136s libgraphite2-3 libharfbuzz0b libimagequant0 libjbig0 libjpeg-turbo8 libjpeg8 136s libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 liblerc4 136s libopenjp2-7 libpixman-1-0 libqhull-r8.0 libraqm0 libsharpyuv0 libtcl8.6 136s libtiff6 libtk8.6 libwebp7 libwebpdemux2 libwebpmux3 libxcb-render0 136s libxcb-shm0 libxft2 libxrender1 libxslt1.1 libxss1 python-matplotlib-data 136s python3-appdirs python3-biopython python3-brotli python3-cairo 136s python3-contourpy python3-cycler python3-dateutil python3-decorator 136s python3-fonttools python3-freetype python3-fs python3-joblib 136s python3-kiwisolver python3-lxml python3-lz4 python3-matplotlib 136s python3-mpmath python3-nanoget-examples python3-numpy python3-packaging 136s python3-pandas python3-pandas-lib python3-pauvre python3-pil 136s python3-pil.imagetk python3-reportlab python3-rlpycairo python3-scipy 136s python3-sklearn python3-sklearn-lib python3-sympy python3-threadpoolctl 136s python3-tk python3-ufolib2 python3-unicodedata2 sgml-base tk8.6-blt2.5 136s unicode-data w3c-sgml-lib x11-common xfonts-encodings xfonts-utils xml-core 136s 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. 136s Need to get 131 MB/131 MB of archives. 136s After this operation, 505 MB of additional disk space will be used. 136s Get:1 /tmp/autopkgtest.McpNkh/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [724 B] 136s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 sgml-base all 1.31 [11.4 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.13+dfsg-2 [984 kB] 136s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-mono all 2.37-8 [502 kB] 136s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-core all 2.37-8 [835 kB] 136s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libfontenc1 amd64 1:1.1.8-1 [14.0 kB] 136s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 136s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-encodings all 1:1.0.5-0ubuntu2 [578 kB] 136s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 xfonts-utils amd64 1:7.7+6build2 [94.6 kB] 136s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-urw-base35 all 20200910-8 [11.0 MB] 136s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 fontconfig-config amd64 2.15.0-1ubuntu1 [36.9 kB] 136s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libfontconfig1 amd64 2.15.0-1ubuntu1 [139 kB] 136s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 136s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 136s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 136s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1 [779 kB] 136s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-7 [630 kB] 136s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 blt amd64 2.5.3+dfsg-7 [4826 B] 136s Get:19 http://ftpmaster.internal/ubuntu noble/main amd64 fonts-dejavu-extra all 2.37-8 [1947 kB] 136s Get:20 http://ftpmaster.internal/ubuntu noble/universe amd64 fonts-lyx all 2.4.0~RC3-1 [170 kB] 136s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 136s Get:22 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 136s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 136s Get:24 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 136s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-1 [572 kB] 136s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libdeflate0 amd64 1.19-1 [43.7 kB] 136s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB] 136s Get:28 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB] 136s Get:29 http://ftpmaster.internal/ubuntu noble/main amd64 libgraphite2-3 amd64 1.3.14-2 [83.1 kB] 136s Get:30 http://ftpmaster.internal/ubuntu noble/main amd64 libharfbuzz0b amd64 8.3.0-2 [469 kB] 136s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libimagequant0 amd64 2.18.0-1 [36.3 kB] 136s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg-turbo8 amd64 2.1.5-2ubuntu1 [147 kB] 136s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libjpeg8 amd64 8c-2ubuntu11 [2148 B] 136s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 136s Get:35 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 136s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 136s Get:37 http://ftpmaster.internal/ubuntu noble/universe amd64 liblbfgsb0 amd64 3.0+dfsg.4-1 [30.4 kB] 136s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 liblcms2-2 amd64 2.14-2 [161 kB] 136s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 liblerc4 amd64 4.0.0+ds-4ubuntu1 [184 kB] 136s Get:40 http://ftpmaster.internal/ubuntu noble/universe amd64 libqhull-r8.0 amd64 2020.2-6 [194 kB] 136s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libraqm0 amd64 0.10.1-1 [14.6 kB] 136s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libsharpyuv0 amd64 1.3.2-0.4 [15.6 kB] 136s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libjbig0 amd64 2.1-6.1ubuntu1 [29.3 kB] 136s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libwebp7 amd64 1.3.2-0.4 [230 kB] 136s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libtiff6 amd64 4.5.1+git230720-3ubuntu1 [232 kB] 136s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpdemux2 amd64 1.3.2-0.4 [12.4 kB] 136s Get:47 http://ftpmaster.internal/ubuntu noble/main amd64 libwebpmux3 amd64 1.3.2-0.4 [25.6 kB] 136s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libxslt1.1 amd64 1.1.39-0exp1 [167 kB] 136s Get:49 http://ftpmaster.internal/ubuntu noble/universe amd64 python-matplotlib-data all 3.6.3-1ubuntu3 [2936 kB] 136s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 python3-appdirs all 1.4.4-4 [10.9 kB] 136s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 python3-numpy amd64 1:1.24.2-2 [7141 kB] 136s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 python3-tk amd64 3.11.5-1 [112 kB] 136s Get:53 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pil.imagetk amd64 10.2.0-1 [9584 B] 136s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libopenjp2-7 amd64 2.5.0-2 [174 kB] 136s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 python3-pil amd64 10.2.0-1 [487 kB] 136s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 python3-cairo amd64 1.25.1-2 [148 kB] 136s Get:57 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-freetype all 2.4.0-1 [83.1 kB] 136s Get:58 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-rlpycairo all 0.3.0-3 [9130 B] 136s Get:59 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-reportlab all 4.1.0-1 [683 kB] 136s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 xml-core all 0.19 [20.3 kB] 136s Get:61 http://ftpmaster.internal/ubuntu noble/universe amd64 w3c-sgml-lib all 1.3-3 [280 kB] 136s Get:62 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-biopython amd64 1.81+dfsg-3 [1670 kB] 136s Get:63 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-brotli amd64 1.1.0-2 [340 kB] 136s Get:64 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-contourpy amd64 1.0.7-1build2 [283 kB] 136s Get:65 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-cycler all 0.11.0-2 [8202 B] 136s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 python3-dateutil all 2.8.2-3 [79.2 kB] 136s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 python3-decorator all 5.1.1-5 [10.1 kB] 136s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-scipy amd64 1.11.4-6 [19.4 MB] 137s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-ufolib2 all 0.16.0+dfsg1-1 [33.5 kB] 137s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-mpmath all 1.2.1-3 [421 kB] 137s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sympy all 1.12-7 [3966 kB] 137s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-fs all 2.4.16-3 [91.1 kB] 137s Get:73 http://ftpmaster.internal/ubuntu noble/main amd64 python3-lxml amd64 5.1.0-1 [2179 kB] 137s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-lz4 amd64 4.0.2+dfsg-1build2 [27.0 kB] 137s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-unicodedata2 amd64 15.1.0+ds-1 [367 kB] 137s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 unicode-data all 15.1.0-1 [8878 kB] 137s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-fonttools amd64 4.46.0-1 [1693 kB] 137s Get:78 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-joblib all 1.3.2-1 [207 kB] 137s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-kiwisolver amd64 1.4.4-2 [50.5 kB] 137s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 python3-packaging all 23.2-1 [40.6 kB] 137s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-matplotlib amd64 3.6.3-1ubuntu3 [7486 kB] 137s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-nanoget-examples all 1.19.3-1 [26.2 MB] 137s Get:83 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas-lib amd64 2.1.4+dfsg-4ubuntu2 [8348 kB] 137s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pandas all 2.1.4+dfsg-4ubuntu2 [3042 kB] 137s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-threadpoolctl all 3.1.0-1 [21.3 kB] 137s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sklearn-lib amd64 1.4.1.post1+dfsg-1 [7003 kB] 137s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-sklearn all 1.4.1.post1+dfsg-1 [2261 kB] 137s Get:88 http://ftpmaster.internal/ubuntu noble/universe amd64 python3-pauvre all 0.2.3-3 [52.6 kB] 138s Fetched 131 MB in 1s (132 MB/s) 138s Selecting previously unselected package sgml-base. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 71421 files and directories currently installed.) 138s Preparing to unpack .../00-sgml-base_1.31_all.deb ... 138s Unpacking sgml-base (1.31) ... 138s Selecting previously unselected package libtcl8.6:amd64. 138s Preparing to unpack .../01-libtcl8.6_8.6.13+dfsg-2_amd64.deb ... 138s Unpacking libtcl8.6:amd64 (8.6.13+dfsg-2) ... 138s Selecting previously unselected package fonts-dejavu-mono. 138s Preparing to unpack .../02-fonts-dejavu-mono_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-mono (2.37-8) ... 138s Selecting previously unselected package fonts-dejavu-core. 138s Preparing to unpack .../03-fonts-dejavu-core_2.37-8_all.deb ... 138s Unpacking fonts-dejavu-core (2.37-8) ... 138s Selecting previously unselected package libfontenc1:amd64. 138s Preparing to unpack .../04-libfontenc1_1%3a1.1.8-1_amd64.deb ... 138s Unpacking libfontenc1:amd64 (1:1.1.8-1) ... 138s Selecting previously unselected package x11-common. 138s Preparing to unpack .../05-x11-common_1%3a7.7+23ubuntu2_all.deb ... 138s Unpacking x11-common (1:7.7+23ubuntu2) ... 138s Selecting previously unselected package xfonts-encodings. 138s Preparing to unpack .../06-xfonts-encodings_1%3a1.0.5-0ubuntu2_all.deb ... 138s Unpacking xfonts-encodings (1:1.0.5-0ubuntu2) ... 138s Selecting previously unselected package xfonts-utils. 138s Preparing to unpack .../07-xfonts-utils_1%3a7.7+6build2_amd64.deb ... 138s Unpacking xfonts-utils (1:7.7+6build2) ... 138s Selecting previously unselected package fonts-urw-base35. 138s Preparing to unpack .../08-fonts-urw-base35_20200910-8_all.deb ... 138s Unpacking fonts-urw-base35 (20200910-8) ... 138s Selecting previously unselected package fontconfig-config. 138s Preparing to unpack .../09-fontconfig-config_2.15.0-1ubuntu1_amd64.deb ... 138s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 138s Selecting previously unselected package libfontconfig1:amd64. 138s Preparing to unpack .../10-libfontconfig1_2.15.0-1ubuntu1_amd64.deb ... 138s Unpacking libfontconfig1:amd64 (2.15.0-1ubuntu1) ... 138s Selecting previously unselected package libxrender1:amd64. 138s Preparing to unpack .../11-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 138s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 138s Selecting previously unselected package libxft2:amd64. 138s Preparing to unpack .../12-libxft2_2.3.6-1_amd64.deb ... 138s Unpacking libxft2:amd64 (2.3.6-1) ... 139s Selecting previously unselected package libxss1:amd64. 139s Preparing to unpack .../13-libxss1_1%3a1.2.3-1build2_amd64.deb ... 139s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 139s Selecting previously unselected package libtk8.6:amd64. 139s Preparing to unpack .../14-libtk8.6_8.6.14-1_amd64.deb ... 139s Unpacking libtk8.6:amd64 (8.6.14-1) ... 139s Selecting previously unselected package tk8.6-blt2.5. 139s Preparing to unpack .../15-tk8.6-blt2.5_2.5.3+dfsg-7_amd64.deb ... 139s Unpacking tk8.6-blt2.5 (2.5.3+dfsg-7) ... 139s Selecting previously unselected package blt. 139s Preparing to unpack .../16-blt_2.5.3+dfsg-7_amd64.deb ... 139s Unpacking blt (2.5.3+dfsg-7) ... 139s Selecting previously unselected package fonts-dejavu-extra. 139s Preparing to unpack .../17-fonts-dejavu-extra_2.37-8_all.deb ... 139s Unpacking fonts-dejavu-extra (2.37-8) ... 139s Selecting previously unselected package fonts-lyx. 139s Preparing to unpack .../18-fonts-lyx_2.4.0~RC3-1_all.deb ... 139s Unpacking fonts-lyx (2.4.0~RC3-1) ... 139s Selecting previously unselected package libblas3:amd64. 139s Preparing to unpack .../19-libblas3_3.12.0-3_amd64.deb ... 139s Unpacking libblas3:amd64 (3.12.0-3) ... 139s Selecting previously unselected package libpixman-1-0:amd64. 139s Preparing to unpack .../20-libpixman-1-0_0.42.2-1_amd64.deb ... 139s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 139s Selecting previously unselected package libxcb-render0:amd64. 139s Preparing to unpack .../21-libxcb-render0_1.15-1_amd64.deb ... 139s Unpacking libxcb-render0:amd64 (1.15-1) ... 139s Selecting previously unselected package libxcb-shm0:amd64. 139s Preparing to unpack .../22-libxcb-shm0_1.15-1_amd64.deb ... 139s Unpacking libxcb-shm0:amd64 (1.15-1) ... 139s Selecting previously unselected package libcairo2:amd64. 139s Preparing to unpack .../23-libcairo2_1.18.0-1_amd64.deb ... 139s Unpacking libcairo2:amd64 (1.18.0-1) ... 139s Selecting previously unselected package libdeflate0:amd64. 139s Preparing to unpack .../24-libdeflate0_1.19-1_amd64.deb ... 139s Unpacking libdeflate0:amd64 (1.19-1) ... 139s Selecting previously unselected package libgfortran5:amd64. 139s Preparing to unpack .../25-libgfortran5_14-20240303-1ubuntu1_amd64.deb ... 139s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libgomp1:amd64. 139s Preparing to unpack .../26-libgomp1_14-20240303-1ubuntu1_amd64.deb ... 139s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libgraphite2-3:amd64. 139s Preparing to unpack .../27-libgraphite2-3_1.3.14-2_amd64.deb ... 139s Unpacking libgraphite2-3:amd64 (1.3.14-2) ... 139s Selecting previously unselected package libharfbuzz0b:amd64. 139s Preparing to unpack .../28-libharfbuzz0b_8.3.0-2_amd64.deb ... 139s Unpacking libharfbuzz0b:amd64 (8.3.0-2) ... 139s Selecting previously unselected package libimagequant0:amd64. 139s Preparing to unpack .../29-libimagequant0_2.18.0-1_amd64.deb ... 139s Unpacking libimagequant0:amd64 (2.18.0-1) ... 139s Selecting previously unselected package libjpeg-turbo8:amd64. 139s Preparing to unpack .../30-libjpeg-turbo8_2.1.5-2ubuntu1_amd64.deb ... 139s Unpacking libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 139s Selecting previously unselected package libjpeg8:amd64. 139s Preparing to unpack .../31-libjpeg8_8c-2ubuntu11_amd64.deb ... 139s Unpacking libjpeg8:amd64 (8c-2ubuntu11) ... 139s Selecting previously unselected package libjs-jquery. 139s Preparing to unpack .../32-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 139s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 139s Selecting previously unselected package libjs-jquery-ui. 139s Preparing to unpack .../33-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 139s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 139s Selecting previously unselected package liblapack3:amd64. 139s Preparing to unpack .../34-liblapack3_3.12.0-3_amd64.deb ... 139s Unpacking liblapack3:amd64 (3.12.0-3) ... 139s Selecting previously unselected package liblbfgsb0:amd64. 139s Preparing to unpack .../35-liblbfgsb0_3.0+dfsg.4-1_amd64.deb ... 139s Unpacking liblbfgsb0:amd64 (3.0+dfsg.4-1) ... 139s Selecting previously unselected package liblcms2-2:amd64. 139s Preparing to unpack .../36-liblcms2-2_2.14-2_amd64.deb ... 139s Unpacking liblcms2-2:amd64 (2.14-2) ... 139s Selecting previously unselected package liblerc4:amd64. 139s Preparing to unpack .../37-liblerc4_4.0.0+ds-4ubuntu1_amd64.deb ... 139s Unpacking liblerc4:amd64 (4.0.0+ds-4ubuntu1) ... 139s Selecting previously unselected package libqhull-r8.0:amd64. 139s Preparing to unpack .../38-libqhull-r8.0_2020.2-6_amd64.deb ... 139s Unpacking libqhull-r8.0:amd64 (2020.2-6) ... 139s Selecting previously unselected package libraqm0:amd64. 139s Preparing to unpack .../39-libraqm0_0.10.1-1_amd64.deb ... 139s Unpacking libraqm0:amd64 (0.10.1-1) ... 139s Selecting previously unselected package libsharpyuv0:amd64. 139s Preparing to unpack .../40-libsharpyuv0_1.3.2-0.4_amd64.deb ... 139s Unpacking libsharpyuv0:amd64 (1.3.2-0.4) ... 139s Selecting previously unselected package libjbig0:amd64. 139s Preparing to unpack .../41-libjbig0_2.1-6.1ubuntu1_amd64.deb ... 139s Unpacking libjbig0:amd64 (2.1-6.1ubuntu1) ... 139s Selecting previously unselected package libwebp7:amd64. 139s Preparing to unpack .../42-libwebp7_1.3.2-0.4_amd64.deb ... 139s Unpacking libwebp7:amd64 (1.3.2-0.4) ... 139s Selecting previously unselected package libtiff6:amd64. 139s Preparing to unpack .../43-libtiff6_4.5.1+git230720-3ubuntu1_amd64.deb ... 139s Unpacking libtiff6:amd64 (4.5.1+git230720-3ubuntu1) ... 140s Selecting previously unselected package libwebpdemux2:amd64. 140s Preparing to unpack .../44-libwebpdemux2_1.3.2-0.4_amd64.deb ... 140s Unpacking libwebpdemux2:amd64 (1.3.2-0.4) ... 140s Selecting previously unselected package libwebpmux3:amd64. 140s Preparing to unpack .../45-libwebpmux3_1.3.2-0.4_amd64.deb ... 140s Unpacking libwebpmux3:amd64 (1.3.2-0.4) ... 140s Selecting previously unselected package libxslt1.1:amd64. 140s Preparing to unpack .../46-libxslt1.1_1.1.39-0exp1_amd64.deb ... 140s Unpacking libxslt1.1:amd64 (1.1.39-0exp1) ... 140s Selecting previously unselected package python-matplotlib-data. 140s Preparing to unpack .../47-python-matplotlib-data_3.6.3-1ubuntu3_all.deb ... 140s Unpacking python-matplotlib-data (3.6.3-1ubuntu3) ... 143s Selecting previously unselected package python3-appdirs. 143s Preparing to unpack .../48-python3-appdirs_1.4.4-4_all.deb ... 143s Unpacking python3-appdirs (1.4.4-4) ... 143s Selecting previously unselected package python3-numpy. 143s Preparing to unpack .../49-python3-numpy_1%3a1.24.2-2_amd64.deb ... 143s Unpacking python3-numpy (1:1.24.2-2) ... 143s Selecting previously unselected package python3-tk:amd64. 143s Preparing to unpack .../50-python3-tk_3.11.5-1_amd64.deb ... 143s Unpacking python3-tk:amd64 (3.11.5-1) ... 143s Selecting previously unselected package python3-pil.imagetk:amd64. 143s Preparing to unpack .../51-python3-pil.imagetk_10.2.0-1_amd64.deb ... 143s Unpacking python3-pil.imagetk:amd64 (10.2.0-1) ... 143s Selecting previously unselected package libopenjp2-7:amd64. 143s Preparing to unpack .../52-libopenjp2-7_2.5.0-2_amd64.deb ... 143s Unpacking libopenjp2-7:amd64 (2.5.0-2) ... 143s Selecting previously unselected package python3-pil:amd64. 143s Preparing to unpack .../53-python3-pil_10.2.0-1_amd64.deb ... 143s Unpacking python3-pil:amd64 (10.2.0-1) ... 143s Selecting previously unselected package python3-cairo. 143s Preparing to unpack .../54-python3-cairo_1.25.1-2_amd64.deb ... 143s Unpacking python3-cairo (1.25.1-2) ... 143s Selecting previously unselected package python3-freetype. 143s Preparing to unpack .../55-python3-freetype_2.4.0-1_all.deb ... 143s Unpacking python3-freetype (2.4.0-1) ... 143s Selecting previously unselected package python3-rlpycairo. 143s Preparing to unpack .../56-python3-rlpycairo_0.3.0-3_all.deb ... 143s Unpacking python3-rlpycairo (0.3.0-3) ... 143s Selecting previously unselected package python3-reportlab. 143s Preparing to unpack .../57-python3-reportlab_4.1.0-1_all.deb ... 143s Unpacking python3-reportlab (4.1.0-1) ... 143s Selecting previously unselected package xml-core. 143s Preparing to unpack .../58-xml-core_0.19_all.deb ... 143s Unpacking xml-core (0.19) ... 143s Selecting previously unselected package w3c-sgml-lib. 143s Preparing to unpack .../59-w3c-sgml-lib_1.3-3_all.deb ... 143s Unpacking w3c-sgml-lib (1.3-3) ... 143s Selecting previously unselected package python3-biopython. 143s Preparing to unpack .../60-python3-biopython_1.81+dfsg-3_amd64.deb ... 143s Unpacking python3-biopython (1.81+dfsg-3) ... 143s Selecting previously unselected package python3-brotli. 143s Preparing to unpack .../61-python3-brotli_1.1.0-2_amd64.deb ... 143s Unpacking python3-brotli (1.1.0-2) ... 143s Selecting previously unselected package python3-contourpy. 143s Preparing to unpack .../62-python3-contourpy_1.0.7-1build2_amd64.deb ... 143s Unpacking python3-contourpy (1.0.7-1build2) ... 143s Selecting previously unselected package python3-cycler. 143s Preparing to unpack .../63-python3-cycler_0.11.0-2_all.deb ... 143s Unpacking python3-cycler (0.11.0-2) ... 143s Selecting previously unselected package python3-dateutil. 143s Preparing to unpack .../64-python3-dateutil_2.8.2-3_all.deb ... 143s Unpacking python3-dateutil (2.8.2-3) ... 143s Selecting previously unselected package python3-decorator. 143s Preparing to unpack .../65-python3-decorator_5.1.1-5_all.deb ... 143s Unpacking python3-decorator (5.1.1-5) ... 143s Selecting previously unselected package python3-scipy. 143s Preparing to unpack .../66-python3-scipy_1.11.4-6_amd64.deb ... 143s Unpacking python3-scipy (1.11.4-6) ... 143s Selecting previously unselected package python3-ufolib2. 143s Preparing to unpack .../67-python3-ufolib2_0.16.0+dfsg1-1_all.deb ... 143s Unpacking python3-ufolib2 (0.16.0+dfsg1-1) ... 143s Selecting previously unselected package python3-mpmath. 143s Preparing to unpack .../68-python3-mpmath_1.2.1-3_all.deb ... 143s Unpacking python3-mpmath (1.2.1-3) ... 143s Selecting previously unselected package python3-sympy. 143s Preparing to unpack .../69-python3-sympy_1.12-7_all.deb ... 143s Unpacking python3-sympy (1.12-7) ... 143s Selecting previously unselected package python3-fs. 143s Preparing to unpack .../70-python3-fs_2.4.16-3_all.deb ... 143s Unpacking python3-fs (2.4.16-3) ... 143s Selecting previously unselected package python3-lxml:amd64. 143s Preparing to unpack .../71-python3-lxml_5.1.0-1_amd64.deb ... 143s Unpacking python3-lxml:amd64 (5.1.0-1) ... 143s Selecting previously unselected package python3-lz4. 143s Preparing to unpack .../72-python3-lz4_4.0.2+dfsg-1build2_amd64.deb ... 143s Unpacking python3-lz4 (4.0.2+dfsg-1build2) ... 143s Selecting previously unselected package python3-unicodedata2. 143s Preparing to unpack .../73-python3-unicodedata2_15.1.0+ds-1_amd64.deb ... 143s Unpacking 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libxrender1:amd64 (1:0.9.10-1.1) ... 145s Setting up python3-joblib (1.3.2-1) ... 145s Setting up python3-lz4 (4.0.2+dfsg-1build2) ... 145s Setting up libxcb-render0:amd64 (1.15-1) ... 145s Setting up python3-unicodedata2 (15.1.0+ds-1) ... 145s Setting up fonts-lyx (2.4.0~RC3-1) ... 145s Setting up python3-threadpoolctl (3.1.0-1) ... 145s Setting up x11-common (1:7.7+23ubuntu2) ... 145s Setting up libdeflate0:amd64 (1.19-1) ... 145s Setting up libqhull-r8.0:amd64 (2020.2-6) ... 145s Setting up libxcb-shm0:amd64 (1.15-1) ... 145s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ... 145s Setting up python3-freetype (2.4.0-1) ... 145s Setting up libjbig0:amd64 (2.1-6.1ubuntu1) ... 145s Setting up unicode-data (15.1.0-1) ... 145s Setting up python3-decorator (5.1.1-5) ... 145s Setting up libfontenc1:amd64 (1:1.1.8-1) ... 145s Setting up libblas3:amd64 (3.12.0-3) ... 145s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 145s Setting up python3-packaging (23.2-1) ... 145s Setting up python3-brotli (1.1.0-2) ... 145s Setting up xfonts-encodings (1:1.0.5-0ubuntu2) ... 145s Setting up python3-cycler (0.11.0-2) ... 145s Setting up libimagequant0:amd64 (2.18.0-1) ... 145s Setting up fonts-dejavu-mono (2.37-8) ... 145s Setting up python3-kiwisolver (1.4.4-2) ... 145s Setting up libtcl8.6:amd64 (8.6.13+dfsg-2) ... 145s Setting up fonts-dejavu-core (2.37-8) ... 145s Setting up libjpeg-turbo8:amd64 (2.1.5-2ubuntu1) ... 145s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ... 145s Setting up libwebp7:amd64 (1.3.2-0.4) ... 145s Setting up fonts-dejavu-extra (2.37-8) ... 145s Setting up libxslt1.1:amd64 (1.1.39-0exp1) ... 145s Setting up python3-nanoget-examples (1.19.3-1) ... 145s Setting up libopenjp2-7:amd64 (2.5.0-2) ... 145s Setting up libharfbuzz0b:amd64 (8.3.0-2) ... 145s Setting up python3-dateutil (2.8.2-3) ... 145s Setting up sgml-base (1.31) ... 145s Setting up libxss1:amd64 (1:1.2.3-1build2) ... 145s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 145s Setting up python3-mpmath (1.2.1-3) ... 146s Setting up python-matplotlib-data (3.6.3-1ubuntu3) ... 146s Setting up libwebpmux3:amd64 (1.3.2-0.4) ... 146s Setting up python3-appdirs (1.4.4-4) ... 146s Setting up libjpeg8:amd64 (8c-2ubuntu11) ... 146s Setting up python3-sympy (1.12-7) ... 150s Setting up liblapack3:amd64 (3.12.0-3) ... 150s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 150s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 150s Setting up libwebpdemux2:amd64 (1.3.2-0.4) ... 150s Setting up xfonts-utils (1:7.7+6build2) ... 150s Setting up python3-fs (2.4.16-3) ... 151s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 151s Setting up libraqm0:amd64 (0.10.1-1) ... 151s Setting up python3-numpy (1:1.24.2-2) ... 152s Setting up 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... 161s Setting up python3-pil.imagetk:amd64 (10.2.0-1) ... 161s Setting up python3-rlpycairo (0.3.0-3) ... 161s Setting up python3-reportlab (4.1.0-1) ... 162s Setting up python3-fonttools (4.46.0-1) ... 162s Setting up python3-ufolib2 (0.16.0+dfsg1-1) ... 163s Setting up python3-matplotlib (3.6.3-1ubuntu3) ... 164s Processing triggers for libc-bin (2.39-0ubuntu6) ... 164s Processing triggers for man-db (2.12.0-3) ... 165s Processing triggers for sgml-base (1.31) ... 165s Setting up w3c-sgml-lib (1.3-3) ... 190s Setting up python3-biopython (1.81+dfsg-3) ... 190s Setting up python3-pauvre (0.2.3-3) ... 191s /usr/lib/python3/dist-packages/pauvre/gfftools.py:178: SyntaxWarning: invalid escape sequence '\ ' 191s """ plots a lff patch 191s /usr/lib/python3/dist-packages/pauvre/gfftools.py:259: SyntaxWarning: invalid escape sequence '\ ' 191s """ plots a rff patch 191s /usr/lib/python3/dist-packages/pauvre/synplot.py:531: SyntaxWarning: invalid escape sequence '\i' 191s seq_name = "$\it{{{0}}}$".format(gff.species) 191s Setting up autopkgtest-satdep (0) ... 194s (Reading database ... 83139 files and directories currently installed.) 194s Removing autopkgtest-satdep (0) ... 194s autopkgtest [22:39:46]: test run-unit-test: [----------------------- 194s 194s #git clone https://github.com/wdecoster/nanotest.git 194s 194s pauvre -h 194s usage: pauvre [-h] [-v] 194s {browser,custommargin,marginplot,redwood,stats,synplot} ... 194s 194s options: 194s -h, --help show this help message and exit 194s -v, --version Installed pauvre version 194s 194s [sub-commands]: 194s {browser,custommargin,marginplot,redwood,stats,synplot} 194s browser an adaptable genome browser with various track types 194s custommargin plot custom marginal histograms of tab-delimited files 194s marginplot plot a marginal histogram of a fastq file 194s redwood make a redwood plot from a bam file 194s stats outputs stats from a fastq file 194s synplot make a synteny plot from a gff file, protein 194s alignment, and partition file 194s 194s pauvre marginplot -h 194s usage: pauvre marginplot [-h] [-q] [--dpi dpi] [-f FASTQ] 194s [--fileform STRING [STRING ...]] 194s [--filt_maxlen FILT_MAXLEN] 194s [--filt_maxqual FILT_MAXQUAL] 194s [--filt_minlen FILT_MINLEN] 194s [--filt_minqual FILT_MINQUAL] [--kmerdf KMERDF] [-n] 194s [--no_timestamp] [-o BASENAME] 194s [--plot_maxlen PLOT_MAXLEN] 194s [--plot_maxqual PLOT_MAXQUAL] 194s [--plot_minlen PLOT_MINLEN] 194s [--plot_minqual PLOT_MINQUAL] [--lengthbin LENGTHBIN] 194s [--qualbin QUALBIN] [-t TITLE] [-y] 194s 194s options: 194s -h, --help show this help message and exit 194s -q, --quiet Do not output warnings to stderr 194s --dpi dpi Change the dpi from the default 600 if you need it 194s higher 194s -f FASTQ, --fastq FASTQ 194s The input FASTQ file. 194s --fileform STRING [STRING ...] 194s Which output format would you like? Def.=png 194s --filt_maxlen FILT_MAXLEN 194s This sets the max read length filter reads. 194s --filt_maxqual FILT_MAXQUAL 194s This sets the max mean read quality to filter reads. 194s --filt_minlen FILT_MINLEN 194s This sets the min read length to filter reads. 194s --filt_minqual FILT_MINQUAL 194s This sets the min mean read quality to filter reads. 194s --kmerdf KMERDF Pass the filename of a data matrix if you would like 194s to plot read length versus number of kmers in that 194s read. The data matrix is a tab-separated text file 194s with columns "id length numks and kmers", where: 194s = read id = the length of the read = 194s the number of canonical kmers in the read = a 194s list representation of kmers ie ['GAT', 'GTA'] 194s -n, --no_transparent Specify this option if you don't want a transparent 194s background. Default is on. 194s --no_timestamp Turn off time stamps in the filename output. 194s -o BASENAME, --output_base_name BASENAME 194s Specify a base name for the output file(s). The input 194s file base name is the default. 194s --plot_maxlen PLOT_MAXLEN 194s Sets the maximum viewing area in the length dimension. 194s --plot_maxqual PLOT_MAXQUAL 194s Sets the maximum viewing area in the quality 194s dimension. 194s --plot_minlen PLOT_MINLEN 194s Sets the minimum viewing area in the length dimension. 194s --plot_minqual PLOT_MINQUAL 194s Sets the minimum viewing area in the quality 194s dimension. 194s --lengthbin LENGTHBIN 194s This sets the bin size to use for length. 194s --qualbin QUALBIN This sets the bin size to use for quality 194s -t TITLE, --title TITLE 194s This sets the title for the whole plot. Use --title 194s "Crustacean's DNA read quality" if you need single 194s quote or apostrophe inside title. 194s -y, --add-yaxes Add Y-axes to both marginal histograms. 194s pauvre marginplot -f nanotest/reads.fastq.gz 197s Keeping reads that satisfy: length >= 0 and meanQual >= 0 197s # Fastq stats for reads.fastq.gz, reads >= 0bp 197s numReads: 371 197s %totalNumReads: 100.00 197s numBasepairs: 8611871 197s %totalBasepairs: 100.00 197s meanLen: 23212.590296495957 197s medianLen: 9390.0 197s minLen: 212 197s maxLen: 393431 197s N50: 60395 197s L50: 36 197s 197s # Fastq stats for reads.fastq.gz, reads >= 1000bp 197s numReads: 349 197s %totalNumReads: 94.07 197s numBasepairs: 8599196 197s %totalBasepairs: 99.85 197s meanLen: 24639.530085959886 197s medianLen: 10585.0 197s minLen: 1009 197s maxLen: 393431 197s N50: 60395 197s L50: 36 197s 197s # Fastq stats for reads.fastq.gz, reads >= 5000bp 197s numReads: 246 197s %totalNumReads: 66.31 197s numBasepairs: 8296771 197s %totalBasepairs: 96.34 197s meanLen: 33726.71138211382 197s medianLen: 17146.0 197s minLen: 5082 197s maxLen: 393431 197s N50: 61111 197s L50: 33 197s 197s # Fastq stats for reads.fastq.gz, reads >= 10000bp 197s numReads: 178 197s %totalNumReads: 47.98 197s numBasepairs: 7817574 197s %totalBasepairs: 90.78 197s meanLen: 43918.95505617977 197s medianLen: 25216.5 197s minLen: 10192 197s maxLen: 393431 197s N50: 67193 197s L50: 30 197s 197s 197s Basepairs >= bin by mean PHRED and length 197s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 197s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 197s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 197s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 197s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 197s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 197s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 197s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 197s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 197s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 197s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 197s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 197s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 197s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 197s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 197s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 197s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 197s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 197s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 197s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 197s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 197s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 197s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 197s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 197s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 197s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 197s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 197s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 197s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 197s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 197s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 197s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 197s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 197s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 197s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 197s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 197s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 197s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 197s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 197s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 197s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 197s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 197s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 197s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 197s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 197s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 197s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 197s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 197s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 197s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 197s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 197s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 197s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 197s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 197s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 197s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 197s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 197s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 197s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 197s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 197s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 197s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 197s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 197s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 197s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 197s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 197s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 197s 140000 1699582 1699582 1378920 930176 341725 0 0 0 197s 160000 1699582 1699582 1378920 930176 341725 0 0 0 197s 180000 1699582 1699582 1378920 930176 341725 0 0 0 197s 200000 1504562 1504562 1183900 735156 341725 0 0 0 197s 220000 1504562 1504562 1183900 735156 341725 0 0 0 197s 240000 1055818 1055818 735156 735156 341725 0 0 0 197s 260000 1055818 1055818 735156 735156 341725 0 0 0 197s 280000 1055818 1055818 735156 735156 341725 0 0 0 197s 300000 1055818 1055818 735156 735156 341725 0 0 0 197s 320000 1055818 1055818 735156 735156 341725 0 0 0 197s 340000 735156 735156 735156 735156 341725 0 0 0 197s 360000 393431 393431 393431 393431 0 0 0 0 197s 380000 393431 393431 393431 393431 0 0 0 0 197s 400000 0 0 0 0 0 0 0 0 197s 197s Number of reads >= bin by mean Phred+Len 197s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 197s 0 371 321 277 207 114 49 2 0 197s 250 369 320 276 206 113 48 2 0 197s 500 363 315 273 203 112 47 2 0 197s 750 355 311 270 201 111 46 2 0 197s 1000 349 307 266 197 108 44 2 0 197s 1500 341 302 263 194 106 44 2 0 197s 2000 322 284 245 179 98 42 2 0 197s 2500 308 271 233 172 94 40 2 0 197s 3000 296 264 227 167 93 40 2 0 197s 3500 282 251 215 156 84 36 2 0 197s 4000 268 237 201 144 79 36 2 0 197s 4500 256 226 192 140 77 34 2 0 197s 5000 246 216 184 134 73 33 2 0 197s 5500 236 208 176 130 72 32 1 0 197s 6000 226 199 167 121 68 30 1 0 197s 6500 215 190 160 115 65 28 0 0 197s 7000 209 185 156 113 64 28 0 0 197s 7500 203 179 151 110 62 26 0 0 197s 8000 197 174 146 106 59 25 0 0 197s 8500 191 170 142 103 57 25 0 0 197s 9000 188 167 140 101 56 24 0 0 197s 9500 182 161 137 100 55 24 0 0 197s 10000 178 157 135 99 54 24 0 0 197s 11000 169 150 129 94 51 24 0 0 197s 12000 160 142 122 90 48 22 0 0 197s 13000 144 128 111 84 46 21 0 0 197s 14000 138 123 107 80 44 19 0 0 197s 15000 134 119 103 76 41 18 0 0 197s 16000 130 116 100 74 41 18 0 0 197s 17000 123 109 94 69 38 17 0 0 197s 18000 119 105 90 65 34 16 0 0 197s 19000 115 102 87 63 33 15 0 0 197s 20000 111 98 84 61 33 15 0 0 197s 21000 105 93 80 58 30 13 0 0 197s 22000 100 90 77 56 28 12 0 0 197s 23000 96 86 73 53 26 11 0 0 197s 24000 94 84 71 51 26 11 0 0 197s 25000 90 80 68 49 25 11 0 0 197s 26000 88 78 67 49 25 11 0 0 197s 27000 84 74 64 47 23 10 0 0 197s 28000 81 71 61 46 22 9 0 0 197s 29000 76 66 57 42 21 8 0 0 197s 30000 71 61 52 38 20 8 0 0 197s 31000 69 59 50 36 19 7 0 0 197s 32000 67 57 48 34 18 7 0 0 197s 33000 66 56 47 33 18 7 0 0 197s 34000 66 56 47 33 18 7 0 0 197s 35000 64 55 46 32 18 7 0 0 197s 36000 61 52 45 31 18 7 0 0 197s 37000 58 49 44 30 17 7 0 0 197s 38000 58 49 44 30 17 7 0 0 197s 39000 57 49 44 30 17 7 0 0 197s 40000 57 49 44 30 17 7 0 0 197s 45000 52 46 42 29 17 7 0 0 197s 50000 47 42 38 25 16 6 0 0 197s 55000 43 38 34 21 13 4 0 0 197s 60000 36 31 28 18 10 3 0 0 197s 65000 32 28 25 16 9 2 0 0 197s 70000 28 25 23 14 9 2 0 0 197s 75000 23 21 19 12 7 2 0 0 197s 80000 21 19 18 11 7 2 0 0 197s 85000 20 18 17 11 7 2 0 0 197s 90000 17 16 15 10 6 2 0 0 197s 95000 17 16 15 10 6 2 0 0 197s 100000 14 13 12 8 4 1 0 0 197s 120000 10 9 8 5 2 0 0 0 197s 140000 6 6 5 3 1 0 0 0 197s 160000 6 6 5 3 1 0 0 0 197s 180000 6 6 5 3 1 0 0 0 197s 200000 5 5 4 2 1 0 0 0 197s 220000 5 5 4 2 1 0 0 0 197s 240000 3 3 2 2 1 0 0 0 197s 260000 3 3 2 2 1 0 0 0 197s 280000 3 3 2 2 1 0 0 0 197s 300000 3 3 2 2 1 0 0 0 197s 320000 3 3 2 2 1 0 0 0 197s 340000 2 2 2 2 1 0 0 0 197s 360000 1 1 1 1 0 0 0 0 197s 380000 1 1 1 1 0 0 0 0 197s 400000 0 0 0 0 0 0 0 0 198s plotting in the following window: 198s 0 <= Q-score (x-axis) <= 14.0 198s 0 <= length (y-axis) <= 223383 199s 199s pauvre marginplot -f nanotest/reads.fastq.gz -t "my title" --filt_maxlen 30000 201s Keeping reads that satisfy: length >= 0 and meanQual >= 0 and length <= 30000 202s plotting in the following window: 202s 0 <= Q-score (x-axis) <= 14.0 202s 0 <= length (y-axis) <= 29294 203s # Fastq stats for reads.fastq.gz, reads >= 0bp 203s numReads: 300 203s %totalNumReads: 100.00 203s numBasepairs: 2729844 203s %totalBasepairs: 100.00 203s meanLen: 9099.48 203s medianLen: 6204.5 203s minLen: 212 203s maxLen: 29590 203s N50: 15222 203s L50: 61 203s 203s # Fastq stats for reads.fastq.gz, reads >= 1000bp 203s numReads: 278 203s %totalNumReads: 92.67 203s numBasepairs: 2717169 203s %totalBasepairs: 99.54 203s meanLen: 9773.989208633093 203s medianLen: 6910.0 203s minLen: 1009 203s maxLen: 29590 203s N50: 15222 203s L50: 61 203s 203s # Fastq stats for reads.fastq.gz, reads >= 5000bp 203s numReads: 175 203s %totalNumReads: 58.33 203s numBasepairs: 2414744 203s %totalBasepairs: 88.46 203s meanLen: 13798.537142857143 203s medianLen: 12063.0 203s minLen: 5082 203s maxLen: 29590 203s N50: 17307 203s L50: 52 203s 203s # Fastq stats for reads.fastq.gz, reads >= 10000bp 203s numReads: 107 203s %totalNumReads: 35.67 203s numBasepairs: 1935547 203s %totalBasepairs: 70.90 203s meanLen: 18089.22429906542 203s medianLen: 16881.0 203s minLen: 10192 203s maxLen: 29590 203s N50: 20295 203s L50: 39 203s 203s 203s Basepairs >= bin by mean PHRED and length 203s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 203s 0 2729844 2468957 2119643 1556484 858972 393665 11781 0 203s 250 2729407 2468745 2119431 1556272 858760 393453 11781 0 203s 500 2726928 2466658 2118130 1554971 858291 392984 11781 0 203s 750 2721984 2464209 2116192 1553563 857617 392310 11781 0 203s 1000 2717169 2460965 2112948 1550319 855138 390635 11781 0 203s 1500 2707362 2454822 2109268 1546639 852794 390635 11781 0 203s 2000 2672887 2422266 2076712 1519238 838240 387346 11781 0 203s 2500 2641814 2393384 2050243 1503478 829208 382949 11781 0 203s 3000 2609116 2374168 2033904 1489726 826376 382949 11781 0 203s 3500 2564269 2332442 1995335 1454265 797280 370584 11781 0 203s 4000 2512068 2280241 1943134 1409238 778266 370584 11781 0 203s 4500 2462190 2234445 1905756 1392691 769886 362204 11781 0 203s 5000 2414744 2186999 1867774 1364464 750909 357457 11781 0 203s 5500 2362072 2144943 1825718 1343414 745461 352009 6333 0 203s 6000 2305333 2093889 1774664 1292360 722519 340437 6333 0 203s 6500 2236325 2037511 1730586 1254474 703348 327653 0 0 203s 7000 2195737 2003551 1703356 1240708 696434 327653 0 0 203s 7500 2152591 1960405 1667528 1219336 682352 313571 0 0 203s 8000 2106380 1921709 1628832 1188281 658986 305742 0 0 203s 8500 2056889 1888763 1595886 1163795 642742 305742 0 0 203s 9000 2030952 1862826 1578483 1146392 633884 296884 0 0 203s 9500 1974999 1806873 1550171 1136895 624387 296884 0 0 203s 10000 1935547 1767421 1530498 1126915 614407 296884 0 0 203s 11000 1840006 1693127 1467100 1074138 582873 296884 0 0 203s 12000 1736297 1600554 1386518 1027634 547567 273563 0 0 203s 13000 1534978 1424405 1249051 952931 523214 261500 0 0 203s 14000 1453681 1356704 1195131 899011 495787 234073 0 0 203s 15000 1395434 1298457 1136884 840764 451857 219542 0 0 203s 16000 1334255 1252372 1090799 809901 451857 219542 0 0 203s 17000 1217331 1135448 990860 726799 401685 202825 0 0 203s 18000 1146730 1064847 920259 656198 331084 185250 0 0 203s 19000 1072466 1008770 864182 618776 312433 166599 0 0 203s 20000 993686 929990 805391 579331 312433 166599 0 0 203s 21000 870897 827698 723394 518156 251258 126075 0 0 203s 22000 763379 763379 659075 475682 208784 104960 0 0 203s 23000 673728 673728 569424 408210 163731 82719 0 0 203s 24000 627024 627024 522720 361506 163731 82719 0 0 203s 25000 528646 528646 448453 312153 138944 82719 0 0 203s 26000 478213 478213 423121 312153 138944 82719 0 0 203s 27000 372570 372570 343949 259378 86169 56621 0 0 203s 28000 289458 289458 260837 231544 58335 28787 0 0 203s 29000 147115 147115 147115 117822 29548 0 0 0 203s 30000 0 0 0 0 0 0 0 0 203s 203s Number of reads >= bin by mean Phred+Len 203s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 203s 0 300 260 225 169 94 41 2 0 203s 250 298 259 224 168 93 40 2 0 203s 500 292 254 221 165 92 39 2 0 203s 750 284 250 218 163 91 38 2 0 203s 1000 278 246 214 159 88 36 2 0 203s 1500 270 241 211 156 86 36 2 0 203s 2000 251 223 193 141 78 34 2 0 203s 2500 237 210 181 134 74 32 2 0 203s 3000 225 203 175 129 73 32 2 0 203s 3500 211 190 163 118 64 28 2 0 203s 4000 197 176 149 106 59 28 2 0 203s 4500 185 165 140 102 57 26 2 0 203s 5000 175 155 132 96 53 25 2 0 203s 5500 165 147 124 92 52 24 1 0 203s 6000 155 138 115 83 48 22 1 0 203s 6500 144 129 108 77 45 20 0 0 203s 7000 138 124 104 75 44 20 0 0 203s 7500 132 118 99 72 42 18 0 0 203s 8000 126 113 94 68 39 17 0 0 203s 8500 120 109 90 65 37 17 0 0 203s 9000 117 106 88 63 36 16 0 0 203s 9500 111 100 85 62 35 16 0 0 203s 10000 107 96 83 61 34 16 0 0 203s 11000 98 89 77 56 31 16 0 0 203s 12000 89 81 70 52 28 14 0 0 203s 13000 73 67 59 46 26 13 0 0 203s 14000 67 62 55 42 24 11 0 0 203s 15000 63 58 51 38 21 10 0 0 203s 16000 59 55 48 36 21 10 0 0 203s 17000 52 48 42 31 18 9 0 0 203s 18000 48 44 38 27 14 8 0 0 203s 19000 44 41 35 25 13 7 0 0 203s 20000 40 37 32 23 13 7 0 0 203s 21000 34 32 28 20 10 5 0 0 203s 22000 29 29 25 18 8 4 0 0 203s 23000 25 25 21 15 6 3 0 0 203s 24000 23 23 19 13 6 3 0 0 203s 25000 19 19 16 11 5 3 0 0 203s 26000 17 17 15 11 5 3 0 0 203s 27000 13 13 12 9 3 2 0 0 203s 28000 10 10 9 8 2 1 0 0 203s 29000 5 5 5 4 1 0 0 0 203s 30000 0 0 0 0 0 0 0 0 203s 203s pauvre marginplot -f nanotest/reads.fastq.gz -y --filt_minqual 7 --fileform svg 204s Keeping reads that satisfy: length >= 0 and meanQual >= 7.0 205s # Fastq stats for reads.fastq.gz, reads >= 0bp 205s numReads: 371 205s %totalNumReads: 100.00 205s numBasepairs: 8611871 205s %totalBasepairs: 100.00 205s meanLen: 23212.590296495957 205s medianLen: 9390.0 205s minLen: 212 205s maxLen: 393431 205s N50: 60395 205s L50: 36 205s 205s # Fastq stats for reads.fastq.gz, reads >= 1000bp 205s numReads: 349 205s %totalNumReads: 94.07 205s numBasepairs: 8599196 205s %totalBasepairs: 99.85 205s meanLen: 24639.530085959886 205s medianLen: 10585.0 205s minLen: 1009 205s maxLen: 393431 205s N50: 60395 205s L50: 36 205s 205s # Fastq stats for reads.fastq.gz, reads >= 5000bp 205s numReads: 246 205s %totalNumReads: 66.31 205s numBasepairs: 8296771 205s %totalBasepairs: 96.34 205s meanLen: 33726.71138211382 205s medianLen: 17146.0 205s minLen: 5082 205s maxLen: 393431 205s N50: 61111 205s L50: 33 205s 205s # Fastq stats for reads.fastq.gz, reads >= 10000bp 205s numReads: 178 205s %totalNumReads: 47.98 205s numBasepairs: 7817574 205s %totalBasepairs: 90.78 205s meanLen: 43918.95505617977 205s medianLen: 25216.5 205s minLen: 10192 205s maxLen: 393431 205s N50: 67193 205s L50: 30 205s 205s 205s Basepairs >= bin by mean PHRED and length 205s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 205s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 205s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 205s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 205s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 205s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 205s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 205s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 205s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 205s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 205s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 205s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 205s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 205s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 205s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 205s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 205s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 205s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 205s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 205s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 205s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 205s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 205s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 205s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 205s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 205s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 205s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 205s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 205s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 205s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 205s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 205s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 205s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 205s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 205s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 205s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 205s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 205s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 205s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 205s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 205s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 205s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 205s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 205s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 205s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 205s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 205s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 205s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 205s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 205s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 205s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 205s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 205s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 205s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 205s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 205s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 205s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 205s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 205s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 205s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 205s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 205s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 205s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 205s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 205s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 205s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 205s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 205s 140000 1699582 1699582 1378920 930176 341725 0 0 0 205s 160000 1699582 1699582 1378920 930176 341725 0 0 0 205s 180000 1699582 1699582 1378920 930176 341725 0 0 0 205s 200000 1504562 1504562 1183900 735156 341725 0 0 0 205s 220000 1504562 1504562 1183900 735156 341725 0 0 0 205s 240000 1055818 1055818 735156 735156 341725 0 0 0 205s 260000 1055818 1055818 735156 735156 341725 0 0 0 205s 280000 1055818 1055818 735156 735156 341725 0 0 0 205s 300000 1055818 1055818 735156 735156 341725 0 0 0 205s 320000 1055818 1055818 735156 735156 341725 0 0 0 205s 340000 735156 735156 735156 735156 341725 0 0 0 205s 360000 393431 393431 393431 393431 0 0 0 0 205s 380000 393431 393431 393431 393431 0 0 0 0 205s 400000 0 0 0 0 0 0 0 0 205s 205s Number of reads >= bin by mean Phred+Len 205s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 205s 0 371 321 277 207 114 49 2 0 205s 250 369 320 276 206 113 48 2 0 205s 500 363 315 273 203 112 47 2 0 205s 750 355 311 270 201 111 46 2 0 205s 1000 349 307 266 197 108 44 2 0 205s 1500 341 302 263 194 106 44 2 0 205s 2000 322 284 245 179 98 42 2 0 205s 2500 308 271 233 172 94 40 2 0 205s 3000 296 264 227 167 93 40 2 0 205s 3500 282 251 215 156 84 36 2 0 205s 4000 268 237 201 144 79 36 2 0 205s 4500 256 226 192 140 77 34 2 0 205s 5000 246 216 184 134 73 33 2 0 205s 5500 236 208 176 130 72 32 1 0 205s 6000 226 199 167 121 68 30 1 0 205s 6500 215 190 160 115 65 28 0 0 205s 7000 209 185 156 113 64 28 0 0 205s 7500 203 179 151 110 62 26 0 0 205s 8000 197 174 146 106 59 25 0 0 205s 8500 191 170 142 103 57 25 0 0 205s 9000 188 167 140 101 56 24 0 0 205s 9500 182 161 137 100 55 24 0 0 205s 10000 178 157 135 99 54 24 0 0 205s 11000 169 150 129 94 51 24 0 0 205s 12000 160 142 122 90 48 22 0 0 205s 13000 144 128 111 84 46 21 0 0 205s 14000 138 123 107 80 44 19 0 0 205s 15000 134 119 103 76 41 18 0 0 205s 16000 130 116 100 74 41 18 0 0 205s 17000 123 109 94 69 38 17 0 0 205s 18000 119 105 90 65 34 16 0 0 205s 19000 115 102 87 63 33 15 0 0 205s 20000 111 98 84 61 33 15 0 0 205s 21000 105 93 80 58 30 13 0 0 205s 22000 100 90 77 56 28 12 0 0 205s 23000 96 86 73 53 26 11 0 0 205s 24000 94 84 71 51 26 11 0 0 205s 25000 90 80 68 49 25 11 0 0 205s 26000 88 78 67 49 25 11 0 0 205s 27000 84 74 64 47 23 10 0 0 205s 28000 81 71 61 46 22 9 0 0 205s 29000 76 66 57 42 21 8 0 0 205s 30000 71 61 52 38 20 8 0 0 205s 31000 69 59 50 36 19 7 0 0 205s 32000 67 57 48 34 18 7 0 0 205s 33000 66 56 47 33 18 7 0 0 205s 34000 66 56 47 33 18 7 0 0 205s 35000 64 55 46 32 18 7 0 0 205s 36000 61 52 45 31 18 7 0 0 205s 37000 58 49 44 30 17 7 0 0 205s 38000 58 49 44 30 17 7 0 0 205s 39000 57 49 44 30 17 7 0 0 205s 40000 57 49 44 30 17 7 0 0 205s 45000 52 46 42 29 17 7 0 0 205s 50000 47 42 38 25 16 6 0 0 205s 55000 43 38 34 21 13 4 0 0 205s 60000 36 31 28 18 10 3 0 0 205s 65000 32 28 25 16 9 2 0 0 205s 70000 28 25 23 14 9 2 0 0 205s 75000 23 21 19 12 7 2 0 0 205s 80000 21 19 18 11 7 2 0 0 205s 85000 20 18 17 11 7 2 0 0 205s 90000 17 16 15 10 6 2 0 0 205s 95000 17 16 15 10 6 2 0 0 205s 100000 14 13 12 8 4 1 0 0 205s 120000 10 9 8 5 2 0 0 0 205s 140000 6 6 5 3 1 0 0 0 205s 160000 6 6 5 3 1 0 0 0 205s 180000 6 6 5 3 1 0 0 0 205s 200000 5 5 4 2 1 0 0 0 205s 220000 5 5 4 2 1 0 0 0 205s 240000 3 3 2 2 1 0 0 0 205s 260000 3 3 2 2 1 0 0 0 205s 280000 3 3 2 2 1 0 0 0 205s 300000 3 3 2 2 1 0 0 0 205s 320000 3 3 2 2 1 0 0 0 205s 340000 2 2 2 2 1 0 0 0 205s 360000 1 1 1 1 0 0 0 0 205s 380000 1 1 1 1 0 0 0 0 205s 400000 0 0 0 0 0 0 0 0 206s plotting in the following window: 206s 0 <= Q-score (x-axis) <= 14.0 206s 0 <= length (y-axis) <= 223383 206s 208s 208s pauvre stats -h 208s usage: pauvre stats [-h] [-q] [-f FASTQ] [-H] [--filt_maxlen FILT_MAXLEN] 208s [--filt_maxqual FILT_MAXQUAL] [--filt_minlen FILT_MINLEN] 208s [--filt_minqual FILT_MINQUAL] 208s 208s options: 208s -h, --help show this help message and exit 208s -q, --quiet Do not output warnings to stderr 208s -f FASTQ, --fastq FASTQ 208s The input FASTQ file. 208s -H, --histogram Make a histogram of the read lengths and saves it to a 208s new file 208s --filt_maxlen FILT_MAXLEN 208s This sets the max read length filter reads. 208s --filt_maxqual FILT_MAXQUAL 208s This sets the max mean read quality to filter reads. 208s --filt_minlen FILT_MINLEN 208s This sets the min read length to filter reads. 208s --filt_minqual FILT_MINQUAL 208s This sets the min mean read quality to filter reads. 208s pauvre stats -f nanotest/reads.fastq.gz 211s # Fastq stats for reads.fastq.gz, reads >= 0bp 211s numReads: 371 211s %totalNumReads: 100.00 211s numBasepairs: 8611871 211s %totalBasepairs: 100.00 211s meanLen: 23212.590296495957 211s medianLen: 9390.0 211s minLen: 212 211s maxLen: 393431 211s N50: 60395 211s L50: 36 211s 211s # Fastq stats for reads.fastq.gz, reads >= 1000bp 211s numReads: 349 211s %totalNumReads: 94.07 211s numBasepairs: 8599196 211s %totalBasepairs: 99.85 211s meanLen: 24639.530085959886 211s medianLen: 10585.0 211s minLen: 1009 211s maxLen: 393431 211s N50: 60395 211s L50: 36 211s 211s # Fastq stats for reads.fastq.gz, reads >= 5000bp 211s numReads: 246 211s %totalNumReads: 66.31 211s numBasepairs: 8296771 211s %totalBasepairs: 96.34 211s meanLen: 33726.71138211382 211s medianLen: 17146.0 211s minLen: 5082 211s maxLen: 393431 211s N50: 61111 211s L50: 33 211s 211s # Fastq stats for reads.fastq.gz, reads >= 10000bp 211s numReads: 178 211s %totalNumReads: 47.98 211s numBasepairs: 7817574 211s %totalBasepairs: 90.78 211s meanLen: 43918.95505617977 211s medianLen: 25216.5 211s minLen: 10192 211s maxLen: 393431 211s N50: 67193 211s L50: 30 211s 211s 211s Basepairs >= bin by mean PHRED and length 211s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 211s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 211s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 211s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 211s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 211s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 211s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 211s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 211s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 211s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 211s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 211s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 211s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 211s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 211s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 211s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 211s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 211s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 211s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 211s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 211s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 211s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 211s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 211s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 211s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 211s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 211s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 211s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 211s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 211s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 211s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 211s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 211s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 211s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 211s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 211s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 211s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 211s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 211s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 211s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 211s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 211s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 211s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 211s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 211s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 211s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 211s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 211s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 211s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 211s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 211s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 211s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 211s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 211s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 211s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 211s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 211s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 211s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 211s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 211s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 211s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 211s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 211s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 211s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 211s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 211s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 211s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 211s 140000 1699582 1699582 1378920 930176 341725 0 0 0 211s 160000 1699582 1699582 1378920 930176 341725 0 0 0 211s 180000 1699582 1699582 1378920 930176 341725 0 0 0 211s 200000 1504562 1504562 1183900 735156 341725 0 0 0 211s 220000 1504562 1504562 1183900 735156 341725 0 0 0 211s 240000 1055818 1055818 735156 735156 341725 0 0 0 211s 260000 1055818 1055818 735156 735156 341725 0 0 0 211s 280000 1055818 1055818 735156 735156 341725 0 0 0 211s 300000 1055818 1055818 735156 735156 341725 0 0 0 211s 320000 1055818 1055818 735156 735156 341725 0 0 0 211s 340000 735156 735156 735156 735156 341725 0 0 0 211s 360000 393431 393431 393431 393431 0 0 0 0 211s 380000 393431 393431 393431 393431 0 0 0 0 211s 400000 0 0 0 0 0 0 0 0 211s 211s Number of reads >= bin by mean Phred+Len 211s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 211s 0 371 321 277 207 114 49 2 0 211s 250 369 320 276 206 113 48 2 0 211s 500 363 315 273 203 112 47 2 0 211s 750 355 311 270 201 111 46 2 0 211s 1000 349 307 266 197 108 44 2 0 211s 1500 341 302 263 194 106 44 2 0 211s 2000 322 284 245 179 98 42 2 0 211s 2500 308 271 233 172 94 40 2 0 211s 3000 296 264 227 167 93 40 2 0 211s 3500 282 251 215 156 84 36 2 0 211s 4000 268 237 201 144 79 36 2 0 211s 4500 256 226 192 140 77 34 2 0 211s 5000 246 216 184 134 73 33 2 0 211s 5500 236 208 176 130 72 32 1 0 211s 6000 226 199 167 121 68 30 1 0 211s 6500 215 190 160 115 65 28 0 0 211s 7000 209 185 156 113 64 28 0 0 211s 7500 203 179 151 110 62 26 0 0 211s 8000 197 174 146 106 59 25 0 0 211s 8500 191 170 142 103 57 25 0 0 211s 9000 188 167 140 101 56 24 0 0 211s 9500 182 161 137 100 55 24 0 0 211s 10000 178 157 135 99 54 24 0 0 211s 11000 169 150 129 94 51 24 0 0 211s 12000 160 142 122 90 48 22 0 0 211s 13000 144 128 111 84 46 21 0 0 211s 14000 138 123 107 80 44 19 0 0 211s 15000 134 119 103 76 41 18 0 0 211s 16000 130 116 100 74 41 18 0 0 211s 17000 123 109 94 69 38 17 0 0 211s 18000 119 105 90 65 34 16 0 0 211s 19000 115 102 87 63 33 15 0 0 211s 20000 111 98 84 61 33 15 0 0 211s 21000 105 93 80 58 30 13 0 0 211s 22000 100 90 77 56 28 12 0 0 211s 23000 96 86 73 53 26 11 0 0 211s 24000 94 84 71 51 26 11 0 0 211s 25000 90 80 68 49 25 11 0 0 211s 26000 88 78 67 49 25 11 0 0 211s 27000 84 74 64 47 23 pauvre stats -f nanotest/reads.fastq.gz -H --filt_maxqual 12 211s 10 0 0 211s 28000 81 71 61 46 22 9 0 0 211s 29000 76 66 57 42 21 8 0 0 211s 30000 71 61 52 38 20 8 0 0 211s 31000 69 59 50 36 19 7 0 0 211s 32000 67 57 48 34 18 7 0 0 211s 33000 66 56 47 33 18 7 0 0 211s 34000 66 56 47 33 18 7 0 0 211s 35000 64 55 46 32 18 7 0 0 211s 36000 61 52 45 31 18 7 0 0 211s 37000 58 49 44 30 17 7 0 0 211s 38000 58 49 44 30 17 7 0 0 211s 39000 57 49 44 30 17 7 0 0 211s 40000 57 49 44 30 17 7 0 0 211s 45000 52 46 42 29 17 7 0 0 211s 50000 47 42 38 25 16 6 0 0 211s 55000 43 38 34 21 13 4 0 0 211s 60000 36 31 28 18 10 3 0 0 211s 65000 32 28 25 16 9 2 0 0 211s 70000 28 25 23 14 9 2 0 0 211s 75000 23 21 19 12 7 2 0 0 211s 80000 21 19 18 11 7 2 0 0 211s 85000 20 18 17 11 7 2 0 0 211s 90000 17 16 15 10 6 2 0 0 211s 95000 17 16 15 10 6 2 0 0 211s 100000 14 13 12 8 4 1 0 0 211s 120000 10 9 8 5 2 0 0 0 211s 140000 6 6 5 3 1 0 0 0 211s 160000 6 6 5 3 1 0 0 0 211s 180000 6 6 5 3 1 0 0 0 211s 200000 5 5 4 2 1 0 0 0 211s 220000 5 5 4 2 1 0 0 0 211s 240000 3 3 2 2 1 0 0 0 211s 260000 3 3 2 2 1 0 0 0 211s 280000 3 3 2 2 1 0 0 0 211s 300000 3 3 2 2 1 0 0 0 211s 320000 3 3 2 2 1 0 0 0 211s 340000 2 2 2 2 1 0 0 0 211s 360000 1 1 1 1 0 0 0 0 211s 380000 1 1 1 1 0 0 0 0 211s 400000 0 0 0 0 0 0 0 0 211s 211s # Fastq stats for reads.fastq.gz, reads >= 0bp 211s numReads: 371 211s %totalNumReads: 100.00 211s numBasepairs: 8611871 211s %totalBasepairs: 100.00 211s meanLen: 23212.590296495957 211s medianLen: 9390.0 211s minLen: 212 211s maxLen: 393431 211s N50: 60395 211s L50: 36 211s 211s # Fastq stats for reads.fastq.gz, reads >= 1000bp 211s numReads: 349 211s %totalNumReads: 94.07 211s numBasepairs: 8599196 211s %totalBasepairs: 99.85 211s meanLen: 24639.530085959886 211s medianLen: 10585.0 211s minLen: 1009 211s maxLen: 393431 211s N50: 60395 211s L50: 36 211s 211s # Fastq stats for reads.fastq.gz, reads >= 5000bp 211s numReads: 246 211s %totalNumReads: 66.31 211s numBasepairs: 8296771 211s %totalBasepairs: 96.34 211s meanLen: 33726.71138211382 211s medianLen: 17146.0 211s minLen: 5082 211s maxLen: 393431 211s N50: 61111 211s L50: 33 211s 211s # Fastq stats for reads.fastq.gz, reads >= 10000bp 211s numReads: 178 211s %totalNumReads: 47.98 211s numBasepairs: 7817574 211s %totalBasepairs: 90.78 211s meanLen: 43918.95505617977 211s medianLen: 25216.5 211s minLen: 10192 211s maxLen: 393431 211s N50: 67193 211s L50: 30 211s 211s 211s Basepairs >= bin by mean PHRED and length 211s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 211s 0 8611871 7722755 6661156 4720156 2513562 895545 11781 0 211s 250 8611434 7722543 6660944 4719944 2513350 895333 11781 0 211s 500 8608955 7720456 6659643 4718643 2512881 894864 11781 0 211s 750 8604011 7718007 6657705 4717235 2512207 894190 11781 0 211s 1000 8599196 7714763 6654461 4713991 2509728 892515 11781 0 211s 1500 8589389 7708620 6650781 4710311 2507384 892515 11781 0 211s 2000 8554914 7676064 6618225 4682910 2492830 889226 11781 0 211s 2500 8523841 7647182 6591756 4667150 2483798 884829 11781 0 211s 3000 8491143 7627966 6575417 4653398 2480966 884829 11781 0 211s 3500 8446296 7586240 6536848 4617937 2451870 872464 11781 0 211s 4000 8394095 7534039 6484647 4572910 2432856 872464 11781 0 211s 4500 8344217 7488243 6447269 4556363 2424476 864084 11781 0 211s 5000 8296771 7440797 6409287 4528136 2405499 859337 11781 0 211s 5500 8244099 7398741 6367231 4507086 2400051 853889 6333 0 211s 6000 8187360 7347687 6316177 4456032 2377109 842317 6333 0 211s 6500 8118352 7291309 6272099 4418146 2357938 829533 0 0 211s 7000 8077764 7257349 6244869 4404380 2351024 829533 0 0 211s 7500 8034618 7214203 6209041 4383008 2336942 815451 0 0 211s 8000 7988407 7175507 6170345 4351953 2313576 807622 0 0 211s 8500 7938916 7142561 6137399 4327467 2297332 807622 0 0 211s 9000 7912979 7116624 6119996 4310064 2288474 798764 0 0 211s 9500 7857026 7060671 6091684 4300567 2278977 798764 0 0 211s 10000 7817574 7021219 6072011 4290587 2268997 798764 0 0 211s 11000 7722033 6946925 6008613 4237810 2237463 798764 0 0 211s 12000 7618324 6854352 5928031 4191306 2202157 775443 0 0 211s 13000 7417005 6678203 5790564 4116603 2177804 763380 0 0 211s 14000 7335708 6610502 5736644 4062683 2150377 735953 0 0 211s 15000 7277461 6552255 5678397 4004436 2106447 721422 0 0 211s 16000 7216282 6506170 5632312 3973573 2106447 721422 0 0 211s 17000 7099358 6389246 5532373 3890471 2056275 704705 0 0 211s 18000 7028757 6318645 5461772 3819870 1985674 687130 0 0 211s 19000 6954493 6262568 5405695 3782448 1967023 668479 0 0 211s 20000 6875713 6183788 5346904 3743003 1967023 668479 0 0 211s 21000 6752924 6081496 5264907 3681828 1905848 627955 0 0 211s 22000 6645406 6017177 5200588 3639354 1863374 606840 0 0 211s 23000 6555755 5927526 5110937 3571882 1818321 584599 0 0 211s 24000 6509051 5880822 5064233 3525178 1818321 584599 0 0 211s 25000 6410673 5782444 4989966 3475825 1793534 584599 0 0 211s 26000 6360240 5732011 4964634 3475825 1793534 584599 0 0 211s 27000 6254597 5626368 4885462 3423050 1740759 558501 0 0 211s 28000 6171485 5543256 4802350 3395216 1712925 530667 0 0 211s 29000 6029142 5400913 4688628 3281494 1684138 501880 0 0 211s 30000 5882027 5253798 4541513 3163672 1654590 501880 0 0 211s 31000 5821490 5193261 4480976 3103135 1624358 471648 0 0 211s 32000 5758286 5130057 4417772 3039931 1592823 471648 0 0 211s 33000 5726083 5097854 4385569 3007728 1592823 471648 0 0 211s 34000 5726083 5097854 4385569 3007728 1592823 471648 0 0 211s 35000 5657458 5063791 4351506 2973665 1592823 471648 0 0 211s 36000 5550544 4956877 4315610 2937769 1592823 471648 0 0 211s 37000 5440987 4847320 4278774 2900933 1555987 471648 0 0 211s 38000 5440987 4847320 4278774 2900933 1555987 471648 0 0 211s 39000 5402415 4847320 4278774 2900933 1555987 471648 0 0 211s 40000 5402415 4847320 4278774 2900933 1555987 471648 0 0 211s 45000 5193644 4721367 4194028 2860812 1555987 471648 0 0 211s 50000 4960568 4534952 4007613 2674397 1508336 423997 0 0 211s 55000 4750881 4325265 3797926 2464710 1352765 320689 0 0 211s 60000 4344431 3918815 3450507 2293175 1181230 263588 0 0 211s 65000 4101203 3736226 3267918 2171697 1120835 203193 0 0 211s 70000 3833468 3535098 3135269 2039048 1120835 203193 0 0 211s 75000 3470049 3246162 2846333 1893802 975589 203193 0 0 211s 80000 3311125 3087238 2766576 1814045 975589 203193 0 0 211s 85000 3228980 3005093 2684431 1814045 975589 203193 0 0 211s 90000 2967292 2829470 2508808 1726901 888445 203193 0 0 211s 95000 2967292 2829470 2508808 1726901 888445 203193 0 0 211s 100000 2674343 2536521 2215859 1530166 691710 105463 0 0 211s 120000 2232740 2094918 1774256 1189896 468021 0 0 0 211s 140000 1699582 1699582 1378920 930176 341725 0 0 0 211s 160000 1699582 1699582 1378920 930176 341725 0 0 0 211s 180000 1699582 1699582 1378920 930176 341725 0 0 0 211s 200000 1504562 1504562 1183900 735156 341725 0 0 0 211s 220000 1504562 1504562 1183900 735156 341725 0 0 0 211s 240000 1055818 1055818 735156 735156 341725 0 0 0 211s 260000 1055818 1055818 735156 735156 341725 0 0 0 211s 280000 1055818 1055818 735156 735156 341725 0 0 0 211s 300000 1055818 1055818 735156 735156 341725 0 0 0 211s 320000 1055818 1055818 735156 735156 341725 0 0 0 211s 340000 735156 735156 735156 735156 341725 0 0 0 211s 360000 393431 393431 393431 393431 0 0 0 0 211s 380000 393431 393431 393431 393431 0 0 0 0 211s 400000 0 0 0 0 0 0 0 0 211s 211s Number of reads >= bin by mean Phred+Len 211s minLen Q7 Q8 Q9 Q10 Q11 Q12 Q13 Q14 211s 0 371 321 277 207 114 49 2 0 211s 250 369 320 276 206 113 48 2 0 211s 500 363 315 273 203 112 47 2 0 211s 750 355 311 270 201 111 46 2 0 211s 1000 349 307 266 197 108 44 2 0 211s 1500 341 302 263 194 106 44 2 0 211s 2000 322 284 245 179 98 42 2 0 211s 2500 308 271 233 172 94 40 2 0 211s 3000 296 264 227 167 93 40 2 0 211s 3500 282 251 215 156 84 36 2 0 211s 4000 268 237 201 144 79 36 2 0 211s 4500 256 226 192 140 77 34 2 0 211s 5000 246 216 184 134 73 33 2 0 211s 5500 236 208 176 130 72 32 1 0 211s 6000 226 199 167 121 68 30 1 0 211s 6500 215 190 160 115 65 28 0 0 211s 7000 209 185 156 113 64 28 0 0 211s 7500 203 179 151 110 62 26 0 0 211s 8000 197 174 146 106 59 25 0 0 211s 8500 191 170 142 103 57 25 0 0 211s 9000 188 167 140 101 56 24 0 0 211s 9500 182 161 137 100 55 24 0 0 211s 10000 178 157 135 99 54 24 0 0 211s 11000 169 150 129 94 51 24 0 0 211s 12000 160 142 122 90 48 22 0 0 211s 13000 144 128 111 84 46 21 0 0 211s 14000 138 123 107 80 44 19 0 0 211s 15000 134 119 103 76 41 18 0 0 211s 16000 130 116 100 74 41 18 0 0 211s 17000 123 109 94 69 38 17 0 0 211s 18000 119 105 90 65 34 16 0 0 211s 19000 115 102 87 63 33 15 0 0 211s 20000 111 98 84 61 33 15 0 0 211s 21000 105 93 80 58 30 13 0 0 211s 22000 100 90 77 56 28 12 0 0 211s 23000 96 86 73 53 26 11 0 0 211s 24000 94 84 71 51 26 11 0 0 211s 25000 90 80 68 49 25 11 0 0 211s 26000 88 78 67 49 25 11 0 0 211s 27000 84 74 64 47 23 10 0 0 211s 28000 81 71 61 46 22 9 0 0 211s 29000 76 66 57 42 21 8 0 0 211s 30000 71 61 52 38 20 8 0 0 211s 31000 69 59 50 36 19 7 0 0 211s 32000 67 57 48 34 18 7 0 0 211s 33000 66 56 47 33 18 7 0 0 211s 34000 66 56 47 33 18 7 0 0 211s 35000 64 55 46 32 18 7 0 0 211s 36000 61 52 45 31 18 7 0 0 211s 37000 58 49 44 30 17 7 0 0 211s 38000 58 49 44 30 17 7 0 0 211s 39000 57 49 44 30 17 7 0 0 211s 40000 57 49 44 30 17 7 0 0 211s 45000 52 46 42 29 17 7 0 0 211s 50000 47 42 38 25 16 6 0 0 211s 55000 43 38 34 21 13 4 0 0 211s 60000 36 31 28 18 10 3 0 0 211s 65000 32 28 25 16 9 2 0 0 211s 70000 28 25 23 14 9 2 0 0 211s 75000 23 21 19 12 7 2 0 0 211s 80000 21 19 18 11 7 2 0 0 211s 85000 20 18 17 11 7 2 0 0 211s 90000 17 16 15 10 6 2 0 0 211s 95000 17 16 15 10 6 2 0 0 211s 100000 14 13 12 8 4 1 0 0 211s 120000 10 9 8 5 2 0 0 0 211s 140000 6 6 5 3 1 0 0 0 211s 160000 6 6 5 3 1 0 0 0 211s 180000 6 6 5 3 1 0 0 0 211s 200000 5 5 4 2 1 0 0 0 211s 220000 5 5 4 2 1 0 0 0 211s 240000 3 3 2 2 1 0 0 0 211s 260000 3 3 2 2 1 0 0 0 211s 280000 3 3 2 2 1 0 0 0 211s 300000 3 3 2 2 1 0 0 0 211s 320000 3 3 2 2 1 0 0 0 211s 340000 2 2 2 2 1 0 0 0 211s 360000 1 1 1 1 0 0 0 0 211s 380000 1 1 1 1 0 0 0 0 211s 400000 0 0 0 0 0 0 0 0 211s 212s autopkgtest [22:40:04]: test run-unit-test: -----------------------] 212s autopkgtest [22:40:04]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 212s run-unit-test PASS 212s autopkgtest [22:40:04]: @@@@@@@@@@@@@@@@@@@@ summary 212s run-unit-test PASS 233s Creating nova instance adt-noble-amd64-python-pauvre-20240323-223631-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240323.img (UUID 5df8a563-0957-4fdd-8453-862df650aaf8)...