0s autopkgtest [02:03:30]: starting date and time: 2024-04-09 02:03:30+0000 0s autopkgtest [02:03:30]: git checkout: 43bc6cdf gitlab-ci: do not include the salsa pipeline 0s autopkgtest [02:03:30]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2og348p0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:curl --apt-upgrade lammps --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu10 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@lcy02-79.secgroup --name adt-noble-amd64-lammps-20240409-020329-juju-7f2275-prod-proposed-migration-environment-3-e35df194-fede-4182-9d2b-1cd2e8b1ec55 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 1065s autopkgtest [02:21:15]: testbed dpkg architecture: amd64 1065s autopkgtest [02:21:15]: testbed apt version: 2.7.14build2 1065s autopkgtest [02:21:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 1065s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 1065s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [831 kB] 1066s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [361 kB] 1066s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [10.6 kB] 1066s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6004 B] 1066s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [271 kB] 1066s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [366 kB] 1066s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 1066s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [5016 B] 1066s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [24.6 kB] 1066s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 1066s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [448 kB] 1066s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [1045 kB] 1066s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 1066s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [9440 B] 1066s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [2044 B] 1066s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 1068s Fetched 3510 kB in 1s (5393 kB/s) 1068s Reading package lists... 1070s Reading package lists... 1070s Building dependency tree... 1070s Reading state information... 1070s Calculating upgrade... 1070s The following packages will be upgraded: 1070s bash curl grub-common grub-pc grub-pc-bin grub2-common libcurl3t64-gnutls 1070s libcurl4t64 libpython3.12-minimal libpython3.12-stdlib libsasl2-2 1070s libsasl2-modules libsasl2-modules-db python3-gi python3.12 1070s python3.12-minimal shim-signed 1071s 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1071s Need to get 12.6 MB of archives. 1071s After this operation, 34.8 kB disk space will be freed. 1071s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB] 1071s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12 amd64 3.12.2-5ubuntu3 [644 kB] 1071s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12-stdlib amd64 3.12.2-5ubuntu3 [2067 kB] 1071s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12-minimal amd64 3.12.2-5ubuntu3 [2337 kB] 1071s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12-minimal amd64 3.12.2-5ubuntu3 [833 kB] 1071s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 python3-gi amd64 3.48.2-1 [232 kB] 1071s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 curl amd64 8.5.0-2ubuntu10 [227 kB] 1071s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10 [340 kB] 1071s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 grub-pc amd64 2.12-1ubuntu7 [137 kB] 1071s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 grub2-common amd64 2.12-1ubuntu7 [669 kB] 1071s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 grub-pc-bin amd64 2.12-1ubuntu7 [1097 kB] 1071s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 grub-common amd64 2.12-1ubuntu7 [2120 kB] 1071s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl3t64-gnutls amd64 8.5.0-2ubuntu10 [333 kB] 1071s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-5ubuntu3 [20.3 kB] 1071s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-5ubuntu3 [53.2 kB] 1071s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-5ubuntu3 [69.7 kB] 1071s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 shim-signed amd64 1.58+15.8-0ubuntu1 [665 kB] 1071s Preconfiguring packages ... 1071s Fetched 12.6 MB in 0s (90.7 MB/s) 1071s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 105900 files and directories currently installed.) 1071s Preparing to unpack .../bash_5.2.21-2ubuntu4_amd64.deb ... 1071s Unpacking bash (5.2.21-2ubuntu4) over (5.2.21-2ubuntu2) ... 1072s Setting up bash (5.2.21-2ubuntu4) ... 1072s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 1072s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 105900 files and directories currently installed.) 1072s Preparing to unpack .../00-python3.12_3.12.2-5ubuntu3_amd64.deb ... 1072s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 1072s Preparing to unpack .../01-libpython3.12-stdlib_3.12.2-5ubuntu3_amd64.deb ... 1072s Unpacking libpython3.12-stdlib:amd64 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 1072s Preparing to unpack .../02-python3.12-minimal_3.12.2-5ubuntu3_amd64.deb ... 1072s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 1072s Preparing to unpack .../03-libpython3.12-minimal_3.12.2-5ubuntu3_amd64.deb ... 1072s Unpacking libpython3.12-minimal:amd64 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 1072s Preparing to unpack .../04-python3-gi_3.48.2-1_amd64.deb ... 1072s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 1072s Preparing to unpack .../05-curl_8.5.0-2ubuntu10_amd64.deb ... 1072s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 1072s Preparing to unpack .../06-libcurl4t64_8.5.0-2ubuntu10_amd64.deb ... 1072s Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 1072s Preparing to unpack .../07-grub-pc_2.12-1ubuntu7_amd64.deb ... 1072s Unpacking grub-pc (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 1073s Preparing to unpack .../08-grub2-common_2.12-1ubuntu7_amd64.deb ... 1073s Unpacking grub2-common (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 1073s Preparing to unpack .../09-grub-pc-bin_2.12-1ubuntu7_amd64.deb ... 1073s Unpacking grub-pc-bin (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 1073s Preparing to unpack .../10-grub-common_2.12-1ubuntu7_amd64.deb ... 1073s Unpacking grub-common (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 1073s Preparing to unpack .../11-libcurl3t64-gnutls_8.5.0-2ubuntu10_amd64.deb ... 1073s Unpacking libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 1073s Preparing to unpack .../12-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_amd64.deb ... 1073s Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 1073s Preparing to unpack .../13-libsasl2-2_2.1.28+dfsg1-5ubuntu3_amd64.deb ... 1073s Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 1073s Preparing to unpack .../14-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_amd64.deb ... 1073s Unpacking libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 1073s Preparing to unpack .../15-shim-signed_1.58+15.8-0ubuntu1_amd64.deb ... 1073s Unpacking shim-signed (1.58+15.8-0ubuntu1) over (1.57+15.8-0ubuntu1) ... 1073s Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10) ... 1073s Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3) ... 1073s Setting up libpython3.12-minimal:amd64 (3.12.2-5ubuntu3) ... 1073s Setting up libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10) ... 1073s Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-5ubuntu3) ... 1073s Setting up grub-common (2.12-1ubuntu7) ... 1073s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 1074s Setting up python3-gi (3.48.2-1) ... 1074s Setting up libsasl2-2:amd64 (2.1.28+dfsg1-5ubuntu3) ... 1074s Setting up curl (8.5.0-2ubuntu10) ... 1074s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 1075s Setting up libpython3.12-stdlib:amd64 (3.12.2-5ubuntu3) ... 1075s Setting up grub2-common (2.12-1ubuntu7) ... 1075s Setting up python3.12 (3.12.2-5ubuntu3) ... 1076s Setting up grub-pc-bin (2.12-1ubuntu7) ... 1076s Setting up shim-signed (1.58+15.8-0ubuntu1) ... 1076s Installing for x86_64-efi platform. 1077s grub-install: warning: EFI variables cannot be set on this system. 1077s grub-install: warning: You will have to complete the GRUB setup manually. 1077s Installation finished. No error reported. 1077s Setting up grub-pc (2.12-1ubuntu7) ... 1077s Installing for i386-pc platform. 1077s Installation finished. No error reported. 1077s Sourcing file `/etc/default/grub' 1077s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1077s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 1077s Generating grub configuration file ... 1077s Found linux image: /boot/vmlinuz-6.8.0-22-generic 1077s Found initrd image: /boot/initrd.img-6.8.0-22-generic 1078s Found linux image: /boot/vmlinuz-6.8.0-11-generic 1078s Found initrd image: /boot/initrd.img-6.8.0-11-generic 1078s Warning: os-prober will not be executed to detect other bootable partitions. 1078s Systems on them will not be added to the GRUB boot configuration. 1078s Check GRUB_DISABLE_OS_PROBER documentation entry. 1078s Adding boot menu entry for UEFI Firmware Settings ... 1078s done 1078s Processing triggers for install-info (7.1-3build2) ... 1078s Processing triggers for libc-bin (2.39-0ubuntu8) ... 1078s Processing triggers for systemd (255.4-1ubuntu7) ... 1078s Processing triggers for man-db (2.12.0-4build1) ... 1079s Processing triggers for debianutils (5.17build1) ... 1080s Reading package lists... 1080s Building dependency tree... 1080s Reading state information... 1080s The following packages will be REMOVED: 1080s linux-headers-6.8.0-11* linux-headers-6.8.0-11-generic* 1080s linux-image-6.8.0-11-generic* linux-modules-6.8.0-11-generic* 1080s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 1080s After this operation, 167 MB disk space will be freed. 1081s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 105901 files and directories currently installed.) 1081s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ... 1081s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ... 1083s Removing linux-image-6.8.0-11-generic (6.8.0-11.11) ... 1084s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.8.0-22-generic 1084s I: /boot/initrd.img.old is now a symlink to initrd.img-6.8.0-22-generic 1084s /etc/kernel/postrm.d/initramfs-tools: 1084s update-initramfs: Deleting /boot/initrd.img-6.8.0-11-generic 1084s /etc/kernel/postrm.d/zz-update-grub: 1084s Sourcing file `/etc/default/grub' 1084s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 1084s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 1084s Generating grub configuration file ... 1084s Found linux image: /boot/vmlinuz-6.8.0-22-generic 1084s Found initrd image: /boot/initrd.img-6.8.0-22-generic 1084s Warning: os-prober will not be executed to detect other bootable partitions. 1084s Systems on them will not be added to the GRUB boot configuration. 1084s Check GRUB_DISABLE_OS_PROBER documentation entry. 1084s Adding boot menu entry for UEFI Firmware Settings ... 1084s done 1084s Removing linux-modules-6.8.0-11-generic (6.8.0-11.11) ... 1085s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74382 files and directories currently installed.) 1085s Purging configuration files for linux-image-6.8.0-11-generic (6.8.0-11.11) ... 1085s Purging configuration files for linux-modules-6.8.0-11-generic (6.8.0-11.11) ... 1085s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 1085s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 1085s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 1085s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 1086s Reading package lists... 1087s Reading package lists... 1087s Building dependency tree... 1087s Reading state information... 1087s Calculating upgrade... 1087s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1087s Reading package lists... 1088s Building dependency tree... 1088s Reading state information... 1088s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 1088s autopkgtest [02:21:38]: rebooting testbed after setup commands that affected boot 1250s autopkgtest [02:24:20]: testbed running kernel: Linux 6.8.0-22-generic #22-Ubuntu SMP PREEMPT_DYNAMIC Thu Apr 4 22:30:32 UTC 2024 1251s autopkgtest [02:24:21]: @@@@@@@@@@@@@@@@@@@@ apt-source lammps 1255s Get:1 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (dsc) [3286 B] 1255s Get:2 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (tar) [153 MB] 1255s Get:3 http://ftpmaster.internal/ubuntu noble/universe lammps 20240207+dfsg-1.1build2 (diff) [17.1 kB] 1255s gpgv: Signature made Sat Mar 16 06:29:40 2024 UTC 1255s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 1255s gpgv: issuer "steve.langasek@ubuntu.com" 1255s gpgv: Can't check signature: No public key 1255s dpkg-source: warning: cannot verify inline signature for ./lammps_20240207+dfsg-1.1build2.dsc: no acceptable signature found 1263s autopkgtest [02:24:33]: testing package lammps version 20240207+dfsg-1.1build2 1264s autopkgtest [02:24:34]: build not needed 1271s autopkgtest [02:24:41]: test crack: preparing testbed 1273s Reading package lists... 1274s Building dependency tree... 1274s Reading state information... 1274s Starting pkgProblemResolver with broken count: 1 1274s Starting 2 pkgProblemResolver with broken count: 1 1274s Investigating (0) libevent-core-2.1-7t64:amd64 < 2.1.12-stable-9ubuntu2 @ii mK Ib > 1274s Broken libevent-core-2.1-7t64:amd64 Breaks on libevent-core-2.1-7:amd64 < none -> 2.1.12-stable-9 @un uN > (< 2.1.12-stable-9ubuntu2) 1274s Considering libevent-core-2.1-7:amd64 7 as a solution to libevent-core-2.1-7t64:amd64 10 1274s Added libevent-core-2.1-7:amd64 to the remove list 1274s Fixing libevent-core-2.1-7t64:amd64 via keep of libevent-core-2.1-7:amd64 1274s Investigating (0) libevent-pthreads-2.1-7:amd64 < none -> 2.1.12-stable-9 @un uN Ib > 1274s Broken libevent-pthreads-2.1-7:amd64 Depends on libevent-core-2.1-7:amd64 < none | 2.1.12-stable-9 @un uH > (= 2.1.12-stable-9) 1274s Considering libevent-core-2.1-7:amd64 7 as a solution to libevent-pthreads-2.1-7:amd64 5 1274s Holding Back libevent-pthreads-2.1-7:amd64 rather than change libevent-core-2.1-7:amd64 1274s Investigating (0) libopenmpi3:amd64 < none -> 4.1.6-5ubuntu1 @un uN Ib > 1274s Broken libopenmpi3:amd64 Depends on libevent-pthreads-2.1-7:amd64 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-pthreads-2.1-7:amd64 5 as a solution to libopenmpi3:amd64 4 1274s Holding Back libopenmpi3:amd64 rather than change libevent-pthreads-2.1-7:amd64 1274s Investigating (0) libpmix2:amd64 < none -> 5.0.1-4 @un uN Ib > 1274s Broken libpmix2:amd64 Depends on libevent-pthreads-2.1-7:amd64 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-pthreads-2.1-7:amd64 5 as a solution to libpmix2:amd64 4 1274s Holding Back libpmix2:amd64 rather than change libevent-pthreads-2.1-7:amd64 1274s Investigating (0) libvtk9.1:amd64 < none -> 9.1.0+really9.1.0+dfsg2-7build1 @un uN Ib > 1274s Broken libvtk9.1:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to libvtk9.1:amd64 0 1274s Holding Back libvtk9.1:amd64 rather than change libopenmpi3:amd64 1274s Investigating (0) openmpi-bin:amd64 < none -> 4.1.6-5ubuntu1 @un uN Ib > 1274s Broken openmpi-bin:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to openmpi-bin:amd64 0 1274s Holding Back openmpi-bin:amd64 rather than change libopenmpi3:amd64 1274s Investigating (0) liblammps0:amd64 < none -> 20240207+dfsg-1 @un uN Ib > 1274s Broken liblammps0:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to liblammps0:amd64 0 1274s Holding Back liblammps0:amd64 rather than change libopenmpi3:amd64 1274s Investigating (0) libpnetcdf0d:amd64 < none -> 1.12.3-2 @un uN Ib > 1274s Broken libpnetcdf0d:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.5) 1274s Considering libopenmpi3:amd64 4 as a solution to libpnetcdf0d:amd64 0 1274s Holding Back libpnetcdf0d:amd64 rather than change libopenmpi3:amd64 1274s Investigating (0) mpi-default-bin:amd64 < none -> 1.15 @un puN Ib > 1274s Broken mpi-default-bin:amd64 Depends on openmpi-bin:amd64 < none | 4.1.6-5ubuntu1 @un uH > 1274s Considering openmpi-bin:amd64 0 as a solution to mpi-default-bin:amd64 -1 1274s Re-Instated libevent-core-2.1-7:amd64 1274s Re-Instated libevent-pthreads-2.1-7:amd64 1274s Re-Instated libpmix2:amd64 1274s Re-Instated libopenmpi3:amd64 1274s Re-Instated openmpi-bin:amd64 1274s Investigating (0) lammps:amd64 < none -> 20240207+dfsg-1 @un puN Ib > 1274s Broken lammps:amd64 Depends on liblammps0:amd64 < none | 20240207+dfsg-1 @un uH > (>= 20240207+dfsg) 1274s Considering liblammps0:amd64 0 as a solution to lammps:amd64 -1 1274s Re-Instated libpnetcdf0d:amd64 1274s Re-Instated libvtk9.1:amd64 1274s Re-Instated liblammps0:amd64 1274s Investigating (1) libevent-core-2.1-7t64:amd64 < 2.1.12-stable-9ubuntu2 @ii mK Ib > 1274s Broken libevent-core-2.1-7t64:amd64 Breaks on libevent-core-2.1-7:amd64 < none -> 2.1.12-stable-9 @un uN > (< 2.1.12-stable-9ubuntu2) 1274s Considering libevent-core-2.1-7:amd64 7 as a solution to libevent-core-2.1-7t64:amd64 10 1274s Added libevent-core-2.1-7:amd64 to the remove list 1274s Fixing libevent-core-2.1-7t64:amd64 via keep of libevent-core-2.1-7:amd64 1274s Investigating (1) libevent-pthreads-2.1-7:amd64 < none -> 2.1.12-stable-9 @un uN Ib > 1274s Broken libevent-pthreads-2.1-7:amd64 Depends on libevent-core-2.1-7:amd64 < none | 2.1.12-stable-9 @un uH > (= 2.1.12-stable-9) 1274s Considering libevent-core-2.1-7:amd64 7 as a solution to libevent-pthreads-2.1-7:amd64 5 1274s Holding Back libevent-pthreads-2.1-7:amd64 rather than change libevent-core-2.1-7:amd64 1274s Investigating (1) libopenmpi3:amd64 < none -> 4.1.6-5ubuntu1 @un uN Ib > 1274s Broken libopenmpi3:amd64 Depends on libevent-pthreads-2.1-7:amd64 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-pthreads-2.1-7:amd64 5 as a solution to libopenmpi3:amd64 4 1274s Holding Back libopenmpi3:amd64 rather than change libevent-pthreads-2.1-7:amd64 1274s Investigating (1) libpmix2:amd64 < none -> 5.0.1-4 @un uN Ib > 1274s Broken libpmix2:amd64 Depends on libevent-pthreads-2.1-7:amd64 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-pthreads-2.1-7:amd64 5 as a solution to libpmix2:amd64 4 1274s Holding Back libpmix2:amd64 rather than change libevent-pthreads-2.1-7:amd64 1274s Investigating (1) libvtk9.1:amd64 < none -> 9.1.0+really9.1.0+dfsg2-7build1 @un uN Ib > 1274s Broken libvtk9.1:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to libvtk9.1:amd64 0 1274s Holding Back libvtk9.1:amd64 rather than change libopenmpi3:amd64 1274s Investigating (1) openmpi-bin:amd64 < none -> 4.1.6-5ubuntu1 @un uN Ib > 1274s Broken openmpi-bin:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to openmpi-bin:amd64 -1 1274s Holding Back openmpi-bin:amd64 rather than change libopenmpi3:amd64 1274s Investigating (1) liblammps0:amd64 < none -> 20240207+dfsg-1 @un uN Ib > 1274s Broken liblammps0:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to liblammps0:amd64 -1 1274s Holding Back liblammps0:amd64 rather than change libopenmpi3:amd64 1274s Investigating (1) libpnetcdf0d:amd64 < none -> 1.12.3-2 @un uN Ib > 1274s Broken libpnetcdf0d:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.5) 1274s Considering libopenmpi3:amd64 4 as a solution to libpnetcdf0d:amd64 0 1274s Holding Back libpnetcdf0d:amd64 rather than change libopenmpi3:amd64 1274s Investigating (1) mpi-default-bin:amd64 < none -> 1.15 @un puN Ib > 1274s Broken mpi-default-bin:amd64 Depends on openmpi-bin:amd64 < none | 4.1.6-5ubuntu1 @un uH > 1274s Considering openmpi-bin:amd64 -1 as a solution to mpi-default-bin:amd64 -1 1274s Considering openmpi-bin:amd64 -1 as a solution to mpi-default-bin:amd64 -1 1274s Considering openmpi-bin:i386 -2 as a solution to mpi-default-bin:amd64 -1 1274s Re-Instated gcc-14-base:i386 1274s Re-Instated libgcc-s1:i386 1274s Re-Instated libc6:i386 1274s Re-Instated libevent-core-2.1-7:i386 1274s Re-Instated libevent-pthreads-2.1-7:i386 1274s Re-Instated libcap2:i386 1274s Re-Instated libudev1:i386 1274s Re-Instated libhwloc15:i386 1274s Re-Instated libmunge2:i386 1274s Re-Instated zlib1g:i386 1274s Re-Instated libpciaccess0:i386 1274s Re-Instated libxau6:i386 1274s Re-Instated libmd0:i386 1274s Re-Instated libbsd0:i386 1274s Re-Instated libxdmcp6:i386 1274s Re-Instated libxcb1:i386 1274s Re-Instated libx11-6:i386 1274s Re-Instated libstdc++6:i386 1274s Re-Instated libicu74:i386 1274s Re-Instated liblzma5:i386 1274s Re-Instated libxml2:i386 1274s Re-Instated libxext6:i386 1274s Re-Instated libxnvctrl0:i386 1274s Re-Instated ocl-icd-libopencl1:i386 1274s Re-Instated libhwloc-plugins:i386 1274s Re-Instated libpmix2t64:i386 1274s Re-Instated libuuid1:i386 1274s Re-Instated libpsm-infinipath1:i386 1274s Re-Instated libopenmpi3t64:i386 1274s Re-Instated openmpi-bin:i386 1274s Investigating (1) lammps:amd64 < none -> 20240207+dfsg-1 @un puN Ib > 1274s Broken lammps:amd64 Depends on liblammps0:amd64 < none | 20240207+dfsg-1 @un uH > (>= 20240207+dfsg) 1274s Considering liblammps0:amd64 -1 as a solution to lammps:amd64 -1 1274s Considering liblammps0t64:amd64 0 as a solution to lammps:amd64 -1 1274s Re-Instated libevent-pthreads-2.1-7t64:amd64 1274s Reinst Failed because of libpmix2:amd64 1274s Reinst Failed because of libopenmpi3t64:amd64 1274s Broken lammps:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to lammps:amd64 -1 1274s Considering libopenmpi3t64:amd64 0 as a solution to lammps:amd64 -1 1274s Investigating (1) libpsm-infinipath1:i386 < none -> 3.3+20.604758e7-6.3 @un uN Ib > 1274s Broken libpsm-infinipath1:i386 Conflicts on libpsm-infinipath1:amd64 < none -> 3.3+20.604758e7-6.3 @un uN Ib > 1274s Considering libpsm-infinipath1:amd64 5 as a solution to libpsm-infinipath1:i386 -1 1274s Holding Back libpsm-infinipath1:i386 rather than change libpsm-infinipath1:amd64 1274s Investigating (2) libevent-core-2.1-7t64:amd64 < 2.1.12-stable-9ubuntu2 @ii mK Ib > 1274s Broken libevent-core-2.1-7t64:amd64 Breaks on libevent-core-2.1-7:i386 < none -> 2.1.12-stable-9 @un uN > (< 2.1.12-stable-9ubuntu2) 1274s Considering libevent-core-2.1-7:i386 0 as a solution to libevent-core-2.1-7t64:amd64 10 1274s Added libevent-core-2.1-7:i386 to the remove list 1274s Fixing libevent-core-2.1-7t64:amd64 via keep of libevent-core-2.1-7:i386 1274s Investigating (2) libpmix2t64:i386 < none -> 5.0.1-4.1 @un uN Ib > 1274s Broken libpmix2t64:i386 Depends on libevent-core-2.1-7:i386 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-core-2.1-7:i386 10 as a solution to libpmix2t64:i386 0 1274s Holding Back libpmix2t64:i386 rather than change libevent-core-2.1-7:i386 1274s Investigating (2) libevent-pthreads-2.1-7t64:amd64 < none -> 2.1.12-stable-9ubuntu2 @un uN Ib > 1274s Broken libevent-pthreads-2.1-7t64:amd64 Breaks on libevent-pthreads-2.1-7:i386 < none -> 2.1.12-stable-9 @un uN Ib > (< 2.1.12-stable-9ubuntu2) 1274s Considering libevent-pthreads-2.1-7:i386 0 as a solution to libevent-pthreads-2.1-7t64:amd64 0 1274s Holding Back libevent-pthreads-2.1-7t64:amd64 rather than change libevent-pthreads-2.1-7:i386 1274s Investigating (2) libevent-pthreads-2.1-7:i386 < none -> 2.1.12-stable-9 @un uN Ib > 1274s Broken libevent-pthreads-2.1-7:i386 Depends on libevent-core-2.1-7:i386 < none | 2.1.12-stable-9 @un uH > (= 2.1.12-stable-9) 1274s Considering libevent-core-2.1-7:i386 10 as a solution to libevent-pthreads-2.1-7:i386 0 1274s Holding Back libevent-pthreads-2.1-7:i386 rather than change libevent-core-2.1-7:i386 1274s Investigating (2) libopenmpi3t64:i386 < none -> 4.1.6-7ubuntu1 @un uN Ib > 1274s Broken libopenmpi3t64:i386 Depends on libevent-core-2.1-7:i386 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-core-2.1-7:i386 10 as a solution to libopenmpi3t64:i386 0 1274s Holding Back libopenmpi3t64:i386 rather than change libevent-core-2.1-7:i386 1274s Investigating (2) lammps:amd64 < none -> 20240207+dfsg-1 @un puN Ib > 1274s Broken lammps:amd64 Depends on liblammps0:amd64 < none | 20240207+dfsg-1 @un uH > (>= 20240207+dfsg) 1274s Considering liblammps0:amd64 -1 as a solution to lammps:amd64 -1 1274s Considering liblammps0t64:amd64 0 as a solution to lammps:amd64 -1 1274s Broken lammps:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to lammps:amd64 -1 1274s Considering libopenmpi3t64:amd64 0 as a solution to lammps:amd64 -1 1274s Investigating (2) openmpi-bin:i386 < none -> 4.1.6-7ubuntu1 @un uN Ib > 1274s Broken openmpi-bin:i386 Depends on libevent-core-2.1-7:i386 < none | 2.1.12-stable-9 @un uH > (>= 2.1.8-stable) 1274s Considering libevent-core-2.1-7:i386 10 as a solution to openmpi-bin:i386 -2 1274s Holding Back openmpi-bin:i386 rather than change libevent-core-2.1-7:i386 1274s Investigating (3) mpi-default-bin:amd64 < none -> 1.15 @un puN Ib > 1274s Broken mpi-default-bin:amd64 Depends on openmpi-bin:amd64 < none | 4.1.6-5ubuntu1 @un uH > 1274s Considering openmpi-bin:amd64 -1 as a solution to mpi-default-bin:amd64 -1 1274s Considering openmpi-bin:amd64 -1 as a solution to mpi-default-bin:amd64 -1 1274s Considering openmpi-bin:i386 -2 as a solution to mpi-default-bin:amd64 -1 1274s Considering openmpi-bin:i386 -2 as a solution to mpi-default-bin:amd64 -1 1274s Considering openmpi-bin:i386 -2 as a solution to mpi-default-bin:amd64 -1 1274s Investigating (3) lammps:amd64 < none -> 20240207+dfsg-1 @un puN Ib > 1274s Broken lammps:amd64 Depends on liblammps0:amd64 < none | 20240207+dfsg-1 @un uH > (>= 20240207+dfsg) 1274s Considering liblammps0:amd64 -1 as a solution to lammps:amd64 -1 1274s Considering liblammps0t64:amd64 0 as a solution to lammps:amd64 -1 1274s Broken lammps:amd64 Depends on libopenmpi3:amd64 < none | 4.1.6-5ubuntu1 @un uH > (>= 4.1.6) 1274s Considering libopenmpi3:amd64 4 as a solution to lammps:amd64 -1 1274s Considering libopenmpi3t64:amd64 0 as a solution to lammps:amd64 -1 1274s Done 1274s Some packages could not be installed. This may mean that you have 1274s requested an impossible situation or if you are using the unstable 1274s distribution that some required packages have not yet been created 1274s or been moved out of Incoming. 1274s The following information may help to resolve the situation: 1274s 1274s The following packages have unmet dependencies: 1274s lammps : Depends: liblammps0 (>= 20240207+dfsg) 1274s Depends: libopenmpi3 (>= 4.1.6) 1274s mpi-default-bin : Depends: openmpi-bin 1274s E: Unable to correct problems, you have held broken packages. 1274s autopkgtest: WARNING: Test dependencies are unsatisfiable with using apt pinning. Retrying with using all packages from noble-proposed 1275s Reading package lists... 1275s Building dependency tree... 1275s Reading state information... 1275s Starting pkgProblemResolver with broken count: 0 1275s Starting 2 pkgProblemResolver with broken count: 0 1275s Done 1276s The following additional packages will be installed: 1276s cpp-12 gcc-12 gcc-12-base gfortran-12 lammps lammps-data libaec0 1276s libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libcairo2 libcc1-0 1276s libdouble-conversion3 libdrm-amdgpu1 libdrm-common libdrm-intel1 1276s libdrm-nouveau2 libdrm-radeon1 libdrm2 libevent-pthreads-2.1-7t64 libfabric1 1276s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 1276s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 1276s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 1276s libhsakmt1 libhwloc-plugins libhwloc15 libisl23 libitm1 libjsoncpp25 1276s libkim-api2 liblammps0t64 liblapack3 libllvm17t64 liblsan0 libmpc3 libmunge2 1276s libnetcdf19t64 libogg0 libopengl0 libopenmpi3t64 libpciaccess0 libpixman-1-0 1276s libpmix2 libpnetcdf0d libproj25 libpsm-infinipath1 libpsm2-2 1276s libpython3.12t64 libquadmath0 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 1276s libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 libtsan2 libubsan1 libucx0 1276s libvoro++1 libvtk9.1 libvulkan1 libx11-6 libx11-data libx11-xcb1 1276s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 1276s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 1276s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 mpi-default-bin 1276s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data x11-common 1276s Suggested packages: 1276s gcc-12-locales cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib 1276s gfortran-12-doc libcoarrays-dev openkim-models libfftw3-bin libfftw3-dev 1276s glew-utils libhwloc-contrib-plugins proj-bin tcl8.6 tk8.6 vtk9-doc 1276s vtk9-examples opencl-icd gfortran | fortran-compiler 1276s Recommended packages: 1276s lammps-doc libgl1-amber-dri mesa-vulkan-drivers | vulkan-icd 1276s The following NEW packages will be installed: 1276s autopkgtest-satdep cpp-12 gcc-12 gcc-12-base gfortran-12 lammps lammps-data 1276s libaec0 libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libcairo2 1276s libcc1-0 libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 1276s libdrm-radeon1 libevent-pthreads-2.1-7t64 libfabric1 libfftw3-double3 1276s libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 libgl1-mesa-dri 1276s libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 libglx0 libgomp1 1276s libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 libhsakmt1 1276s libhwloc-plugins libhwloc15 libisl23 libitm1 libjsoncpp25 libkim-api2 1276s liblammps0t64 liblapack3 libllvm17t64 liblsan0 libmpc3 libmunge2 1276s libnetcdf19t64 libogg0 libopengl0 libopenmpi3t64 libpciaccess0 libpixman-1-0 1276s libpmix2 libpnetcdf0d libproj25 libpsm-infinipath1 libpsm2-2 1276s libpython3.12t64 libquadmath0 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 1276s libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 libtsan2 libubsan1 libucx0 1276s libvoro++1 libvtk9.1 libvulkan1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 1276s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 1276s libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 1276s libxshmfence1 libxss1 libxxf86vm1 mpi-default-bin ocl-icd-libopencl1 1276s openmpi-bin openmpi-common proj-data x11-common 1276s The following packages will be upgraded: 1276s libdrm-common libdrm2 libx11-6 libx11-data 1276s 4 upgraded, 101 newly installed, 0 to remove and 188 not upgraded. 1276s Need to get 180 MB/180 MB of archives. 1276s After this operation, 723 MB of additional disk space will be used. 1276s Get:1 /tmp/autopkgtest.jeJ5YQ/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [708 B] 1276s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdrm-common all 2.4.120-2build1 [8096 B] 1276s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdrm2 amd64 2.4.120-2build1 [40.5 kB] 1276s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libx11-data all 2:1.8.7-1build1 [115 kB] 1276s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libx11-6 amd64 2:1.8.7-1build1 [650 kB] 1276s Get:6 http://ftpmaster.internal/ubuntu noble/universe amd64 gcc-12-base amd64 12.3.0-17ubuntu1 [46.2 kB] 1276s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libisl23 amd64 0.26-3build1 [680 kB] 1276s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libmpc3 amd64 1.3.1-1build1 [54.5 kB] 1276s Get:9 http://ftpmaster.internal/ubuntu noble/universe amd64 cpp-12 amd64 12.3.0-17ubuntu1 [10.8 MB] 1276s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240330-1ubuntu2 [47.7 kB] 1276s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240330-1ubuntu2 [147 kB] 1276s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240330-1ubuntu2 [29.1 kB] 1276s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240330-1ubuntu2 [10.4 kB] 1276s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240330-1ubuntu2 [3020 kB] 1276s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240330-1ubuntu2 [1310 kB] 1276s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240330-1ubuntu2 [2731 kB] 1276s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240330-1ubuntu2 [1172 kB] 1276s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240330-1ubuntu2 [155 kB] 1276s Get:19 http://ftpmaster.internal/ubuntu noble/universe amd64 libgcc-12-dev amd64 12.3.0-17ubuntu1 [2577 kB] 1276s Get:20 http://ftpmaster.internal/ubuntu noble/universe amd64 gcc-12 amd64 12.3.0-17ubuntu1 [21.6 MB] 1276s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240330-1ubuntu2 [930 kB] 1276s Get:22 http://ftpmaster.internal/ubuntu noble/universe amd64 libgfortran-12-dev amd64 12.3.0-17ubuntu1 [926 kB] 1276s Get:23 http://ftpmaster.internal/ubuntu noble/universe amd64 gfortran-12 amd64 12.3.0-17ubuntu1 [11.2 MB] 1276s Get:24 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 lammps-data all 20240207+dfsg-1.1build3 [9711 kB] 1276s Get:25 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 1276s Get:26 http://ftpmaster.internal/ubuntu noble/main amd64 libllvm17t64 amd64 1:17.0.6-9build3 [26.2 MB] 1277s Get:27 http://ftpmaster.internal/ubuntu noble/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 1277s Get:28 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdrm-amdgpu1 amd64 2.4.120-2build1 [20.2 kB] 1277s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 1277s Get:30 http://ftpmaster.internal/ubuntu noble/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 1277s Get:31 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libamdhip64-5 amd64 5.2.3-13 [5208 kB] 1277s Get:32 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libblas3 amd64 3.12.0-3build1 [238 kB] 1277s Get:33 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpixman-1-0 amd64 0.42.2-1build1 [279 kB] 1277s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 1277s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 1277s Get:36 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxrender1 amd64 1:0.9.10-1.1build1 [19.0 kB] 1277s Get:37 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-3 [566 kB] 1277s Get:38 http://ftpmaster.internal/ubuntu noble/universe amd64 libdouble-conversion3 amd64 3.3.0-1 [39.9 kB] 1277s Get:39 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libpciaccess0 amd64 0.17-3build1 [18.6 kB] 1277s Get:40 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdrm-intel1 amd64 2.4.120-2build1 [63.8 kB] 1277s Get:41 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdrm-nouveau2 amd64 2.4.120-2build1 [17.7 kB] 1277s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libdrm-radeon1 amd64 2.4.120-2build1 [20.8 kB] 1277s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-9ubuntu2 [7982 B] 1277s Get:44 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [178 kB] 1277s Get:45 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm2-2 amd64 11.2.185-2 [196 kB] 1277s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 librdmacm1t64 amd64 50.0-2build2 [70.7 kB] 1277s Get:47 http://ftpmaster.internal/ubuntu noble/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 1277s Get:48 http://ftpmaster.internal/ubuntu noble/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu3 [838 kB] 1277s Get:49 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libvulkan1 amd64 1.3.275.0-1build1 [142 kB] 1277s Get:50 http://ftpmaster.internal/ubuntu noble/main amd64 libglapi-mesa amd64 24.0.3-1ubuntu4 [40.8 kB] 1277s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-dri3-0 amd64 1.15-1 [7174 B] 1277s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libgl1-mesa-dri amd64 24.0.3-1ubuntu4 [8942 kB] 1277s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libglvnd0 amd64 1.7.0-1build1 [69.6 kB] 1277s Get:54 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libx11-xcb1 amd64 2:1.8.7-1build1 [7800 B] 1277s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-dri2-0 amd64 1.15-1 [7276 B] 1277s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-glx0 amd64 1.15-1 [24.6 kB] 1277s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-present0 amd64 1.15-1 [5708 B] 1277s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-randr0 amd64 1.15-1 [18.1 kB] 1277s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-sync1 amd64 1.15-1 [9358 B] 1277s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-xfixes0 amd64 1.15-1 [10.2 kB] 1277s Get:61 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxfixes3 amd64 1:6.0.0-2build1 [10.8 kB] 1277s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxshmfence1 amd64 1.3-1build5 [4764 B] 1277s Get:63 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxxf86vm1 amd64 1:1.1.4-1build4 [9282 B] 1277s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libglx-mesa0 amd64 24.0.3-1ubuntu4 [154 kB] 1277s Get:65 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libglx0 amd64 1.7.0-1build1 [38.6 kB] 1277s Get:66 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libgl1 amd64 1.7.0-1build1 [102 kB] 1277s Get:67 http://ftpmaster.internal/ubuntu noble/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [43.5 kB] 1277s Get:68 http://ftpmaster.internal/ubuntu noble/universe amd64 libglew2.2 amd64 2.2.0-4 [196 kB] 1277s Get:69 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 1277s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 1277s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 1277s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc15 amd64 2.10.0-1 [171 kB] 1277s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libjsoncpp25 amd64 1.9.5-6build1 [82.8 kB] 1277s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libkim-api2 amd64 2.3.0-1 [582 kB] 1277s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 liblapack3 amd64 3.12.0-3build1 [2650 kB] 1277s Get:76 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19t64 amd64 1:4.9.2-5ubuntu4 [473 kB] 1277s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 1277s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 1277s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [38.3 kB] 1277s Get:80 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc-plugins amd64 2.10.0-1 [15.8 kB] 1277s Get:81 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libpmix2 amd64 5.0.1-4 [695 kB] 1277s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libucx0 amd64 1.16.0+ds-5 [1140 kB] 1277s Get:83 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libopenmpi3t64 amd64 4.1.6-7ubuntu2 [2563 kB] 1277s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 libpnetcdf0d amd64 1.12.3-2build2 [867 kB] 1277s Get:85 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12t64 amd64 3.12.2-5ubuntu3 [2332 kB] 1277s Get:86 http://ftpmaster.internal/ubuntu noble/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 1277s Get:87 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libogg0 amd64 1.3.5-3build1 [22.7 kB] 1277s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libopengl0 amd64 1.7.0-1build1 [32.8 kB] 1277s Get:89 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.4.0-1build2 [7885 kB] 1277s Get:90 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.4.0-1build2 [1396 kB] 1277s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libtbbmalloc2 amd64 2021.11.0-2ubuntu2 [60.5 kB] 1277s Get:92 http://ftpmaster.internal/ubuntu noble/universe amd64 libtbbbind-2-5 amd64 2021.11.0-2ubuntu2 [16.4 kB] 1277s Get:93 http://ftpmaster.internal/ubuntu noble/universe amd64 libtbb12 amd64 2021.11.0-2ubuntu2 [106 kB] 1277s Get:94 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 1277s Get:95 http://ftpmaster.internal/ubuntu noble/main amd64 libtheora0 amd64 1.1.1+dfsg.1-16.1build3 [211 kB] 1277s Get:96 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxft2 amd64 2.3.6-1build1 [45.3 kB] 1277s Get:97 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 x11-common all 1:7.7+23ubuntu3 [21.7 kB] 1277s Get:98 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libxss1 amd64 1:1.2.3-1build3 [7204 B] 1277s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 1277s Get:100 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libvtk9.1 amd64 9.1.0+really9.1.0+dfsg2-7build1 [20.3 MB] 1277s Get:101 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 liblammps0t64 amd64 20240207+dfsg-1.1build3 [7168 kB] 1277s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 openmpi-common all 4.1.6-7ubuntu2 [170 kB] 1277s Get:103 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 openmpi-bin amd64 4.1.6-7ubuntu2 [114 kB] 1277s Get:104 http://ftpmaster.internal/ubuntu noble/universe amd64 mpi-default-bin amd64 1.15 [2336 B] 1277s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 lammps amd64 20240207+dfsg-1.1build3 [15.3 kB] 1278s Fetched 180 MB in 2s (115 MB/s) 1278s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74381 files and directories currently installed.) 1278s Preparing to unpack .../000-libdrm-common_2.4.120-2build1_all.deb ... 1278s Unpacking libdrm-common (2.4.120-2build1) over (2.4.120-2) ... 1278s Preparing to unpack .../001-libdrm2_2.4.120-2build1_amd64.deb ... 1278s Unpacking libdrm2:amd64 (2.4.120-2build1) over (2.4.120-2) ... 1278s Preparing to unpack .../002-libx11-data_2%3a1.8.7-1build1_all.deb ... 1278s Unpacking libx11-data (2:1.8.7-1build1) over (2:1.8.7-1) ... 1278s Preparing to unpack .../003-libx11-6_2%3a1.8.7-1build1_amd64.deb ... 1278s Unpacking libx11-6:amd64 (2:1.8.7-1build1) over (2:1.8.7-1) ... 1278s Selecting previously unselected package gcc-12-base:amd64. 1278s Preparing to unpack .../004-gcc-12-base_12.3.0-17ubuntu1_amd64.deb ... 1278s Unpacking gcc-12-base:amd64 (12.3.0-17ubuntu1) ... 1278s Selecting previously unselected package libisl23:amd64. 1278s Preparing to unpack .../005-libisl23_0.26-3build1_amd64.deb ... 1278s Unpacking libisl23:amd64 (0.26-3build1) ... 1278s Selecting previously unselected package libmpc3:amd64. 1278s Preparing to unpack .../006-libmpc3_1.3.1-1build1_amd64.deb ... 1278s Unpacking libmpc3:amd64 (1.3.1-1build1) ... 1278s Selecting previously unselected package cpp-12. 1278s Preparing to unpack .../007-cpp-12_12.3.0-17ubuntu1_amd64.deb ... 1278s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 1278s Selecting previously unselected package libcc1-0:amd64. 1278s Preparing to unpack .../008-libcc1-0_14-20240330-1ubuntu2_amd64.deb ... 1278s Unpacking libcc1-0:amd64 (14-20240330-1ubuntu2) ... 1278s Selecting previously unselected package libgomp1:amd64. 1279s Preparing to unpack .../009-libgomp1_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libgomp1:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libitm1:amd64. 1279s Preparing to unpack .../010-libitm1_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libitm1:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libatomic1:amd64. 1279s Preparing to unpack .../011-libatomic1_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libatomic1:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libasan8:amd64. 1279s Preparing to unpack .../012-libasan8_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libasan8:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package liblsan0:amd64. 1279s Preparing to unpack .../013-liblsan0_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking liblsan0:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libtsan2:amd64. 1279s Preparing to unpack .../014-libtsan2_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libtsan2:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libubsan1:amd64. 1279s Preparing to unpack .../015-libubsan1_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libubsan1:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libquadmath0:amd64. 1279s Preparing to unpack .../016-libquadmath0_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libquadmath0:amd64 (14-20240330-1ubuntu2) ... 1279s Selecting previously unselected package libgcc-12-dev:amd64. 1279s Preparing to unpack .../017-libgcc-12-dev_12.3.0-17ubuntu1_amd64.deb ... 1279s Unpacking libgcc-12-dev:amd64 (12.3.0-17ubuntu1) ... 1279s Selecting previously unselected package gcc-12. 1279s Preparing to unpack .../018-gcc-12_12.3.0-17ubuntu1_amd64.deb ... 1279s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 1279s Selecting previously unselected package libgfortran5:amd64. 1279s Preparing to unpack .../019-libgfortran5_14-20240330-1ubuntu2_amd64.deb ... 1279s Unpacking libgfortran5:amd64 (14-20240330-1ubuntu2) ... 1280s Selecting previously unselected package libgfortran-12-dev:amd64. 1280s Preparing to unpack .../020-libgfortran-12-dev_12.3.0-17ubuntu1_amd64.deb ... 1280s Unpacking libgfortran-12-dev:amd64 (12.3.0-17ubuntu1) ... 1280s Selecting previously unselected package gfortran-12. 1280s Preparing to unpack .../021-gfortran-12_12.3.0-17ubuntu1_amd64.deb ... 1280s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 1280s Selecting previously unselected package lammps-data. 1280s Preparing to unpack .../022-lammps-data_20240207+dfsg-1.1build3_all.deb ... 1280s Unpacking lammps-data (20240207+dfsg-1.1build3) ... 1280s Selecting previously unselected package libaec0:amd64. 1280s Preparing to unpack .../023-libaec0_1.1.2-1_amd64.deb ... 1280s Unpacking libaec0:amd64 (1.1.2-1) ... 1280s Selecting previously unselected package libllvm17t64:amd64. 1280s Preparing to unpack .../024-libllvm17t64_1%3a17.0.6-9build3_amd64.deb ... 1280s Unpacking libllvm17t64:amd64 (1:17.0.6-9build3) ... 1281s Selecting previously unselected package libamd-comgr2:amd64. 1281s Preparing to unpack .../025-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 1281s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 1281s Selecting previously unselected package libdrm-amdgpu1:amd64. 1281s Preparing to unpack .../026-libdrm-amdgpu1_2.4.120-2build1_amd64.deb ... 1281s Unpacking libdrm-amdgpu1:amd64 (2.4.120-2build1) ... 1281s Selecting previously unselected package libhsakmt1:amd64. 1281s Preparing to unpack .../027-libhsakmt1_5.7.0-1build1_amd64.deb ... 1281s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 1281s Selecting previously unselected package libhsa-runtime64-1. 1281s Preparing to unpack .../028-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 1281s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 1281s Selecting previously unselected package libamdhip64-5. 1281s Preparing to unpack .../029-libamdhip64-5_5.2.3-13_amd64.deb ... 1281s Unpacking libamdhip64-5 (5.2.3-13) ... 1281s Selecting previously unselected package libblas3:amd64. 1281s Preparing to unpack .../030-libblas3_3.12.0-3build1_amd64.deb ... 1281s Unpacking libblas3:amd64 (3.12.0-3build1) ... 1281s Selecting previously unselected package libpixman-1-0:amd64. 1281s Preparing to unpack .../031-libpixman-1-0_0.42.2-1build1_amd64.deb ... 1281s Unpacking libpixman-1-0:amd64 (0.42.2-1build1) ... 1281s Selecting previously unselected package libxcb-render0:amd64. 1281s Preparing to unpack .../032-libxcb-render0_1.15-1_amd64.deb ... 1281s Unpacking libxcb-render0:amd64 (1.15-1) ... 1281s Selecting previously unselected package libxcb-shm0:amd64. 1281s Preparing to unpack .../033-libxcb-shm0_1.15-1_amd64.deb ... 1281s Unpacking libxcb-shm0:amd64 (1.15-1) ... 1281s Selecting previously unselected package libxrender1:amd64. 1281s Preparing to unpack .../034-libxrender1_1%3a0.9.10-1.1build1_amd64.deb ... 1281s Unpacking libxrender1:amd64 (1:0.9.10-1.1build1) ... 1281s Selecting previously unselected package libcairo2:amd64. 1281s Preparing to unpack .../035-libcairo2_1.18.0-3_amd64.deb ... 1281s Unpacking libcairo2:amd64 (1.18.0-3) ... 1281s Selecting previously unselected package libdouble-conversion3:amd64. 1281s Preparing to unpack .../036-libdouble-conversion3_3.3.0-1_amd64.deb ... 1281s Unpacking libdouble-conversion3:amd64 (3.3.0-1) ... 1281s Selecting previously unselected package libpciaccess0:amd64. 1281s Preparing to unpack .../037-libpciaccess0_0.17-3build1_amd64.deb ... 1281s Unpacking libpciaccess0:amd64 (0.17-3build1) ... 1281s Selecting previously unselected package libdrm-intel1:amd64. 1281s Preparing to unpack .../038-libdrm-intel1_2.4.120-2build1_amd64.deb ... 1281s Unpacking libdrm-intel1:amd64 (2.4.120-2build1) ... 1281s Selecting previously unselected package libdrm-nouveau2:amd64. 1281s Preparing to unpack .../039-libdrm-nouveau2_2.4.120-2build1_amd64.deb ... 1281s Unpacking libdrm-nouveau2:amd64 (2.4.120-2build1) ... 1282s Selecting previously unselected package libdrm-radeon1:amd64. 1282s Preparing to unpack .../040-libdrm-radeon1_2.4.120-2build1_amd64.deb ... 1282s Unpacking libdrm-radeon1:amd64 (2.4.120-2build1) ... 1282s Selecting previously unselected package libevent-pthreads-2.1-7t64:amd64. 1282s Preparing to unpack .../041-libevent-pthreads-2.1-7t64_2.1.12-stable-9ubuntu2_amd64.deb ... 1282s Unpacking libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-9ubuntu2) ... 1282s Selecting previously unselected package libpsm-infinipath1. 1282s Preparing to unpack .../042-libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb ... 1282s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3) ... 1282s Selecting previously unselected package libpsm2-2. 1282s Preparing to unpack .../043-libpsm2-2_11.2.185-2_amd64.deb ... 1282s Unpacking libpsm2-2 (11.2.185-2) ... 1282s Selecting previously unselected package librdmacm1t64:amd64. 1282s Preparing to unpack .../044-librdmacm1t64_50.0-2build2_amd64.deb ... 1282s Unpacking librdmacm1t64:amd64 (50.0-2build2) ... 1282s Selecting previously unselected package libfabric1:amd64. 1282s Preparing to unpack .../045-libfabric1_1.17.0-3build2_amd64.deb ... 1282s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 1282s Selecting previously unselected package libfftw3-double3:amd64. 1282s Preparing to unpack .../046-libfftw3-double3_3.3.10-1ubuntu3_amd64.deb ... 1282s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 1282s Selecting previously unselected package libvulkan1:amd64. 1282s Preparing to unpack .../047-libvulkan1_1.3.275.0-1build1_amd64.deb ... 1282s Unpacking libvulkan1:amd64 (1.3.275.0-1build1) ... 1282s Selecting previously unselected package libglapi-mesa:amd64. 1282s Preparing to unpack .../048-libglapi-mesa_24.0.3-1ubuntu4_amd64.deb ... 1282s Unpacking libglapi-mesa:amd64 (24.0.3-1ubuntu4) ... 1282s Selecting previously unselected package libxcb-dri3-0:amd64. 1282s Preparing to unpack .../049-libxcb-dri3-0_1.15-1_amd64.deb ... 1282s Unpacking libxcb-dri3-0:amd64 (1.15-1) ... 1282s Selecting previously unselected package libgl1-mesa-dri:amd64. 1282s Preparing to unpack .../050-libgl1-mesa-dri_24.0.3-1ubuntu4_amd64.deb ... 1282s Unpacking libgl1-mesa-dri:amd64 (24.0.3-1ubuntu4) ... 1282s Selecting previously unselected package libglvnd0:amd64. 1282s Preparing to unpack .../051-libglvnd0_1.7.0-1build1_amd64.deb ... 1282s Unpacking libglvnd0:amd64 (1.7.0-1build1) ... 1282s Selecting previously unselected package libx11-xcb1:amd64. 1282s Preparing to unpack .../052-libx11-xcb1_2%3a1.8.7-1build1_amd64.deb ... 1282s Unpacking libx11-xcb1:amd64 (2:1.8.7-1build1) ... 1282s Selecting previously unselected package libxcb-dri2-0:amd64. 1282s Preparing to unpack .../053-libxcb-dri2-0_1.15-1_amd64.deb ... 1282s Unpacking libxcb-dri2-0:amd64 (1.15-1) ... 1282s Selecting previously unselected package libxcb-glx0:amd64. 1282s Preparing to unpack .../054-libxcb-glx0_1.15-1_amd64.deb ... 1282s Unpacking libxcb-glx0:amd64 (1.15-1) ... 1282s Selecting previously unselected package libxcb-present0:amd64. 1282s Preparing to unpack .../055-libxcb-present0_1.15-1_amd64.deb ... 1282s Unpacking libxcb-present0:amd64 (1.15-1) ... 1282s Selecting previously unselected package libxcb-randr0:amd64. 1282s Preparing to unpack .../056-libxcb-randr0_1.15-1_amd64.deb ... 1282s Unpacking libxcb-randr0:amd64 (1.15-1) ... 1282s Selecting previously unselected package libxcb-sync1:amd64. 1282s Preparing to unpack .../057-libxcb-sync1_1.15-1_amd64.deb ... 1282s Unpacking libxcb-sync1:amd64 (1.15-1) ... 1282s Selecting previously unselected package libxcb-xfixes0:amd64. 1282s Preparing to unpack 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(3.12.0-3build1) ... 1283s Selecting previously unselected package libnetcdf19t64:amd64. 1283s Preparing to unpack .../074-libnetcdf19t64_1%3a4.9.2-5ubuntu4_amd64.deb ... 1283s Unpacking libnetcdf19t64:amd64 (1:4.9.2-5ubuntu4) ... 1283s Selecting previously unselected package libmunge2:amd64. 1283s Preparing to unpack .../075-libmunge2_0.5.15-4build1_amd64.deb ... 1283s Unpacking libmunge2:amd64 (0.5.15-4build1) ... 1283s Selecting previously unselected package libxnvctrl0:amd64. 1283s Preparing to unpack .../076-libxnvctrl0_510.47.03-0ubuntu4_amd64.deb ... 1283s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 1283s Selecting previously unselected package ocl-icd-libopencl1:amd64. 1283s Preparing to unpack .../077-ocl-icd-libopencl1_2.3.2-1_amd64.deb ... 1283s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1) ... 1283s Selecting previously unselected package libhwloc-plugins:amd64. 1283s Preparing to unpack .../078-libhwloc-plugins_2.10.0-1_amd64.deb ... 1283s Unpacking libhwloc-plugins:amd64 (2.10.0-1) ... 1283s Selecting previously unselected package libpmix2:amd64. 1283s Preparing to unpack .../079-libpmix2_5.0.1-4_amd64.deb ... 1283s Unpacking libpmix2:amd64 (5.0.1-4) ... 1283s Selecting previously unselected package libucx0:amd64. 1283s Preparing to unpack .../080-libucx0_1.16.0+ds-5_amd64.deb ... 1283s Unpacking libucx0:amd64 (1.16.0+ds-5) ... 1283s Selecting previously unselected package libopenmpi3t64:amd64. 1283s Preparing to unpack .../081-libopenmpi3t64_4.1.6-7ubuntu2_amd64.deb ... 1283s Unpacking libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 1283s Selecting previously unselected package libpnetcdf0d:amd64. 1283s Preparing to unpack .../082-libpnetcdf0d_1.12.3-2build2_amd64.deb ... 1283s Unpacking libpnetcdf0d:amd64 (1.12.3-2build2) ... 1283s Selecting previously unselected package libpython3.12t64:amd64. 1283s Preparing to unpack .../083-libpython3.12t64_3.12.2-5ubuntu3_amd64.deb ... 1283s Unpacking libpython3.12t64:amd64 (3.12.2-5ubuntu3) ... 1283s Selecting previously unselected package libvoro++1. 1283s Preparing to unpack .../084-libvoro++1_0.5+revert-to-0.4.6+dfsg1-1_amd64.deb ... 1283s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 1283s Selecting previously unselected package libogg0:amd64. 1283s Preparing to unpack .../085-libogg0_1.3.5-3build1_amd64.deb ... 1283s Unpacking libogg0:amd64 (1.3.5-3build1) ... 1283s Selecting previously unselected package libopengl0:amd64. 1283s Preparing to unpack .../086-libopengl0_1.7.0-1build1_amd64.deb ... 1283s Unpacking libopengl0:amd64 (1.7.0-1build1) ... 1283s Selecting previously unselected package proj-data. 1283s Preparing to unpack .../087-proj-data_9.4.0-1build2_all.deb ... 1283s Unpacking proj-data (9.4.0-1build2) ... 1283s Selecting previously unselected package libproj25:amd64. 1283s Preparing to unpack .../088-libproj25_9.4.0-1build2_amd64.deb ... 1283s Unpacking libproj25:amd64 (9.4.0-1build2) ... 1283s Selecting previously unselected package 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previously unselected package libxft2:amd64. 1284s Preparing to unpack .../094-libxft2_2.3.6-1build1_amd64.deb ... 1284s Unpacking libxft2:amd64 (2.3.6-1build1) ... 1284s Selecting previously unselected package x11-common. 1284s Preparing to unpack .../095-x11-common_1%3a7.7+23ubuntu3_all.deb ... 1284s Unpacking x11-common (1:7.7+23ubuntu3) ... 1284s Selecting previously unselected package libxss1:amd64. 1284s Preparing to unpack .../096-libxss1_1%3a1.2.3-1build3_amd64.deb ... 1284s Unpacking libxss1:amd64 (1:1.2.3-1build3) ... 1284s Selecting previously unselected package libtk8.6:amd64. 1284s Preparing to unpack .../097-libtk8.6_8.6.14-1build1_amd64.deb ... 1284s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 1284s Selecting previously unselected package libvtk9.1:amd64. 1284s Preparing to unpack .../098-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_amd64.deb ... 1284s Unpacking libvtk9.1:amd64 (9.1.0+really9.1.0+dfsg2-7build1) ... 1284s Selecting previously unselected package 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Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ... 1285s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode 1285s Setting up libtsan2:amd64 (14-20240330-1ubuntu2) ... 1285s Setting up libisl23:amd64 (0.26-3build1) ... 1285s Setting up libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 1285s Setting up libdrm-common (2.4.120-2build1) ... 1285s Setting up libcc1-0:amd64 (14-20240330-1ubuntu2) ... 1285s Setting up liblsan0:amd64 (14-20240330-1ubuntu2) ... 1285s Setting up libsz2:amd64 (1.1.2-1) ... 1285s Setting up libitm1:amd64 (14-20240330-1ubuntu2) ... 1285s Setting up libfabric1:amd64 (1.17.0-3build2) ... 1285s Setting up libx11-xcb1:amd64 (2:1.8.7-1build1) ... 1285s Setting up liblapack3:amd64 (3.12.0-3build1) ... 1285s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode 1285s Setting up cpp-12 (12.3.0-17ubuntu1) ... 1285s Setting up libxrender1:amd64 (1:0.9.10-1.1build1) ... 1285s Setting up libcairo2:amd64 (1.18.0-3) ... 1285s Setting up libxxf86vm1:amd64 (1:1.1.4-1build4) ... 1285s Setting up libtbbbind-2-5:amd64 (2021.11.0-2ubuntu2) ... 1285s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu4) ... 1285s Setting up libxfixes3:amd64 (1:6.0.0-2build1) ... 1285s Setting up libgcc-12-dev:amd64 (12.3.0-17ubuntu1) ... 1285s Setting up libdrm2:amd64 (2.4.120-2build1) ... 1285s Setting up libtheora0:amd64 (1.1.1+dfsg.1-16.1build3) ... 1285s Setting up libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 1285s Setting up libdrm-amdgpu1:amd64 (2.4.120-2build1) ... 1285s Setting up libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 1285s Setting up libnetcdf19t64:amd64 (1:4.9.2-5ubuntu4) ... 1285s Setting up libxft2:amd64 (2.3.6-1build1) ... 1285s Setting up libdrm-nouveau2:amd64 (2.4.120-2build1) ... 1285s Setting up libdrm-radeon1:amd64 (2.4.120-2build1) ... 1285s Setting up libtk8.6:amd64 (8.6.14-1build1) ... 1285s Setting up libdrm-intel1:amd64 (2.4.120-2build1) ... 1285s Setting up libgl1-mesa-dri:amd64 (24.0.3-1ubuntu4) ... 1285s Setting up libgfortran-12-dev:amd64 (12.3.0-17ubuntu1) ... 1285s Setting up libtbb12:amd64 (2021.11.0-2ubuntu2) ... 1285s Setting up libhwloc-plugins:amd64 (2.10.0-1) ... 1285s Setting up gcc-12 (12.3.0-17ubuntu1) ... 1285s Setting up libhsakmt1:amd64 (5.7.0-1build1) ... 1285s Setting up libglx-mesa0:amd64 (24.0.3-1ubuntu4) ... 1285s Setting up libglx0:amd64 (1.7.0-1build1) ... 1285s Setting up libpmix2:amd64 (5.0.1-4) ... 1285s Setting up gfortran-12 (12.3.0-17ubuntu1) ... 1285s Setting up libgl1:amd64 (1.7.0-1build1) ... 1285s Setting up libglew2.2:amd64 (2.2.0-4) ... 1285s Setting up libhsa-runtime64-1 (5.7.1-2build1) ... 1285s Setting up libkim-api2:amd64 (2.3.0-1) ... 1285s Setting up libgl2ps1.4 (1.4.2+dfsg1-2) ... 1285s Setting up libamdhip64-5 (5.2.3-13) ... 1285s Setting up libucx0:amd64 (1.16.0+ds-5) ... 1285s Setting up libopenmpi3t64:amd64 (4.1.6-7ubuntu2) ... 1285s Setting up libpnetcdf0d:amd64 (1.12.3-2build2) ... 1285s Setting up openmpi-bin (4.1.6-7ubuntu2) ... 1285s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode 1285s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode 1285s Setting up mpi-default-bin (1.15) ... 1285s Setting up libvtk9.1:amd64 (9.1.0+really9.1.0+dfsg2-7build1) ... 1285s Setting up liblammps0t64:amd64 (20240207+dfsg-1.1build3) ... 1285s Setting up lammps (20240207+dfsg-1.1build3) ... 1285s Setting up autopkgtest-satdep (0) ... 1285s Processing triggers for man-db (2.12.0-4build1) ... 1286s Processing triggers for libc-bin (2.39-0ubuntu8) ... 1290s (Reading database ... 76756 files and directories currently installed.) 1290s Removing autopkgtest-satdep (0) ... 1291s autopkgtest [02:25:01]: test crack: [----------------------- 1291s LAMMPS (7 Feb 2024 - Update 1) 1291s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1291s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1291s using 1 OpenMP thread(s) per MPI task 1291s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 1291s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 1291s 2 by 1 by 1 MPI processor grid 1291s Created 8141 atoms 1291s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 1291s create_atoms CPU = 0.002 seconds 1291s 302 atoms in group lower 1291s 302 atoms in group upper 1291s 604 atoms in group boundary 1291s 7537 atoms in group mobile 1291s 841 atoms in group leftupper 1291s 841 atoms in group leftlower 1291s Setting atom values ... 1291s 841 settings made for type 1291s Setting atom values ... 1291s 841 settings made for type 1291s Setting atom values ... 1291s 302 settings made for type 1291s Setting atom values ... 1291s 302 settings made for type 1291s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1291s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 1291s Neighbor list info ... 1291s update: every = 1 steps, delay = 5 steps, check = yes 1291s max neighbors/atom: 2000, page size: 100000 1291s master list distance cutoff = 2.8 1291s ghost atom cutoff = 2.8 1291s binsize = 1.4, bins = 80 56 1 1291s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1291s (1) pair lj/cut, perpetual 1291s attributes: half, newton on 1291s pair build: half/bin/atomonly/newton 1291s stencil: half/bin/2d 1291s bin: standard 1291s Setting up Verlet run ... 1291s Unit style : lj 1291s Current step : 0 1291s Time step : 0.003 1291s Per MPI rank memory allocation (min/avg/max) = 3.097 | 3.097 | 3.097 Mbytes 1291s Step Temp E_pair E_mol TotEng Press Volume 1291s 0 0.065993465 -3.2595015 0 -3.1984123 -0.035939913 8605.5917 1291s 200 0.060035253 -3.2531886 0 -3.1976149 -0.22757684 8638.5331 1291s 400 0.06054278 -3.2510706 0 -3.1950271 -0.42811733 8677.8288 1291s 600 0.060576995 -3.246816 0 -3.1907408 -0.60017647 8717.6131 1292s 800 0.060802753 -3.2413477 0 -3.1850635 -0.74499308 8756.4512 1292s 1000 0.061812114 -3.2349942 0 -3.1777756 -0.87130079 8796.9575 1292s 1200 0.06317147 -3.2277552 0 -3.1692783 -0.98010628 8823.1488 1292s 1400 0.065125405 -3.2198031 0 -3.1595175 -1.0690179 8858.8358 1292s 1600 0.06725411 -3.2111272 0 -3.148871 -1.1440993 8892.6607 1292s 1800 0.069389572 -3.2019689 0 -3.137736 -1.199078 8933.7591 1292s 2000 0.071276448 -3.1921621 0 -3.1261826 -1.239553 8969.0463 1292s 2200 0.073243486 -3.1818809 0 -3.1140805 -1.264839 8997.6559 1292s 2400 0.075063494 -3.1711703 0 -3.1016851 -1.2772278 9038.4932 1292s 2600 0.076789207 -3.1600658 0 -3.0889832 -1.2754953 9073.4997 1292s 2800 0.07875979 -3.1487143 0 -3.0758075 -1.2637926 9106.2245 1293s 3000 0.080591853 -3.1372361 0 -3.0626334 -1.2388824 9142.7862 1293s 3200 0.08227693 -3.125423 0 -3.0492605 -1.2055283 9169.4322 1293s 3400 0.084289444 -3.1136554 0 -3.03563 -1.1672422 9204.8205 1293s 3600 0.086720297 -3.1021183 0 -3.0218427 -1.126381 9233.2656 1293s 3800 0.089264018 -3.0909262 0 -3.0082959 -1.0899774 9265.4143 1293s 4000 0.091377688 -3.0795096 0 -2.9949227 -1.0580229 9297.6799 1293s 4200 0.092665135 -3.0678736 0 -2.9820949 -1.0390124 9331.6135 1293s 4400 0.09055434 -3.0560482 0 -2.9722234 -1.0323741 9362.2075 1293s 4600 0.088763719 -3.0446018 0 -2.9624346 -1.027693 9391.6949 1293s 4800 0.089467982 -3.0337452 0 -2.950926 -1.0232092 9427.4155 1294s 5000 0.089910902 -3.0237571 0 -2.9405279 -1.0174796 9452.031 1294s Loop time of 2.43606 on 2 procs for 5000 steps with 8141 atoms 1294s 1294s Performance: 532006.235 tau/day, 2052.493 timesteps/s, 16.709 Matom-step/s 1294s 97.8% CPU use with 2 MPI tasks x 1 OpenMP threads 1294s 1294s MPI task timing breakdown: 1294s Section | min time | avg time | max time |%varavg| %total 1294s --------------------------------------------------------------- 1294s Pair | 1.8299 | 1.8385 | 1.8471 | 0.6 | 75.47 1294s Neigh | 0.11498 | 0.11965 | 0.12432 | 1.3 | 4.91 1294s Comm | 0.19753 | 0.1985 | 0.19946 | 0.2 | 8.15 1294s Output | 0.00081301 | 0.0018837 | 0.0029543 | 2.5 | 0.08 1294s Modify | 0.2009 | 0.20347 | 0.20604 | 0.6 | 8.35 1294s Other | | 0.07403 | | | 3.04 1294s 1294s Nlocal: 4070.5 ave 4085 max 4056 min 1294s Histogram: 1 0 0 0 0 0 0 0 0 1 1294s Nghost: 207 ave 208 max 206 min 1294s Histogram: 1 0 0 0 0 0 0 0 0 1 1294s Neighs: 35700 ave 35927 max 35473 min 1294s Histogram: 1 0 0 0 0 0 0 0 0 1 1294s 1294s Total # of neighbors = 71400 1294s Ave neighs/atom = 8.7704213 1294s Neighbor list builds = 106 1294s Dangerous builds = 0 1294s Total wall time: 0:00:02 1294s LAMMPS (7 Feb 2024 - Update 1) 1298s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1298s using 1 OpenMP thread(s) per MPI task 1298s Lattice spacing in x,y,z = 1.1142771 1.9299846 1.1142771 1298s Created orthogonal box = (0 0 -0.27856928) to (111.42771 77.199383 0.27856928) 1298s 1 by 1 by 1 MPI processor grid 1298s Created 8141 atoms 1298s using lattice units in orthogonal box = (-0.011142771 -0.0077199383 -0.27856928) to (111.43885 77.207103 0.27856928) 1298s create_atoms CPU = 0.002 seconds 1298s 302 atoms in group lower 1298s 302 atoms in group upper 1298s 604 atoms in group boundary 1298s 7537 atoms in group mobile 1298s 841 atoms in group leftupper 1298s 841 atoms in group leftlower 1298s Setting atom values ... 1298s 841 settings made for type 1298s Setting atom values ... 1298s 841 settings made for type 1298s Setting atom values ... 1298s 302 settings made for type 1298s Setting atom values ... 1298s 302 settings made for type 1298s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1298s Generated 0 of 10 mixed pair_coeff terms from geometric mixing rule 1298s Neighbor list info ... 1298s update: every = 1 steps, delay = 5 steps, check = yes 1298s max neighbors/atom: 2000, page size: 100000 1298s master list distance cutoff = 2.8 1298s ghost atom cutoff = 2.8 1298s binsize = 1.4, bins = 80 56 1 1298s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1298s (1) pair lj/cut, perpetual 1298s attributes: half, newton on 1298s pair build: half/bin/atomonly/newton 1298s stencil: half/bin/2d 1298s bin: standard 1298s Setting up Verlet run ... 1298s Unit style : lj 1298s Current step : 0 1298s Time step : 0.003 1298s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1298s Step Temp E_pair E_mol TotEng Press Volume 1298s 0 0.065651733 -3.2595015 0 -3.1987287 -0.036239172 8605.5917 1298s 200 0.060086376 -3.2531936 0 -3.1975725 -0.23125026 8638.8101 1298s 400 0.060533553 -3.2509973 0 -3.1949623 -0.4305406 8679.2464 1298s 600 0.06082965 -3.2466949 0 -3.1903858 -0.6028531 8716.7569 1298s 800 0.061677224 -3.2413215 0 -3.1842278 -0.7482749 8756.226 1298s 1000 0.062383731 -3.2349273 0 -3.1771796 -0.87425132 8793.1116 1298s 1200 0.063709246 -3.2276094 0 -3.1686347 -0.98020161 8828.8863 1298s 1400 0.065404552 -3.2196608 0 -3.1591168 -1.0695384 8866.4893 1298s 1600 0.067579602 -3.2110378 0 -3.1484804 -1.1456387 8900.6772 1298s 1800 0.069324241 -3.2018536 0 -3.1376812 -1.2020999 8933.017 1298s 2000 0.071014927 -3.1921108 0 -3.1263733 -1.2430105 8963.9853 1298s 2200 0.072992881 -3.1818701 0 -3.1143017 -1.2701297 9004.4136 1298s 2400 0.075000723 -3.1712313 0 -3.1018043 -1.2830866 9034.9991 1298s 2600 0.076843477 -3.1601004 0 -3.0889675 -1.27924 9072.1325 1298s 2800 0.078671706 -3.1487747 0 -3.0759495 -1.2659604 9103.9526 1298s 3000 0.080713586 -3.1373277 0 -3.0626123 -1.2440673 9134.552 1298s 3200 0.08309469 -3.1260242 0 -3.0491047 -1.214547 9169.0003 1298s 3400 0.085424766 -3.1146623 0 -3.0355859 -1.1839326 9206.909 1298s 3600 0.087396485 -3.1029493 0 -3.0220477 -1.143412 9233.783 1298s 3800 0.089007987 -3.090822 0 -3.0084286 -1.1000791 9259.0348 1298s 4000 0.089813071 -3.0794078 0 -2.9962692 -1.062847 9281.82 1298s 4200 0.08584753 -3.0668559 0 -2.9873882 -1.037972 9308.8113 1298s 4400 0.086197517 -3.0559678 0 -2.9761761 -1.028843 9328.9666 1298s 4600 0.086766447 -3.0437627 0 -2.9634443 -1.0208785 9361.9925 1298s 4800 0.088195149 -3.0328502 0 -2.9512093 -1.0272063 9395.6122 1298s 5000 0.089415266 -3.0228825 0 -2.9401122 -1.0215336 9436.1637 1298s Loop time of 4.26787 on 1 procs for 5000 steps with 8141 atoms 1298s 1298s Performance: 303664.362 tau/day, 1171.545 timesteps/s, 9.538 Matom-step/s 1298s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 1298s 1298s MPI task timing breakdown: 1298s Section | min time | avg time | max time |%varavg| %total 1298s --------------------------------------------------------------- 1298s Pair | 3.5575 | 3.5575 | 3.5575 | 0.0 | 83.36 1298s Neigh | 0.21314 | 0.21314 | 0.21314 | 0.0 | 4.99 1298s Comm | 0.0039188 | 0.0039188 | 0.0039188 | 0.0 | 0.09 1298s Output | 0.0014924 | 0.0014924 | 0.0014924 | 0.0 | 0.03 1298s Modify | 0.40199 | 0.40199 | 0.40199 | 0.0 | 9.42 1298s Other | | 0.08978 | | | 2.10 1298s 1298s Nlocal: 8141 ave 8141 max 8141 min 1298s Histogram: 1 0 0 0 0 0 0 0 0 0 1298s Nghost: 0 ave 0 max 0 min 1298s Histogram: 1 0 0 0 0 0 0 0 0 0 1298s Neighs: 71389 ave 71389 max 71389 min 1298s Histogram: 1 0 0 0 0 0 0 0 0 0 1298s 1298s Total # of neighbors = 71389 1298s Ave neighs/atom = 8.7690701 1298s Neighbor list builds = 100 1298s Dangerous builds = 0 1298s Total wall time: 0:00:04 1298s run: OK 1299s autopkgtest [02:25:09]: test crack: -----------------------] 1299s autopkgtest [02:25:09]: test crack: - - - - - - - - - - results - - - - - - - - - - 1299s crack PASS 1299s autopkgtest [02:25:09]: test dipole: preparing testbed 1302s Reading package lists... 1302s Building dependency tree... 1302s Reading state information... 1302s Starting pkgProblemResolver with broken count: 0 1302s Starting 2 pkgProblemResolver with broken count: 0 1302s Done 1303s The following NEW packages will be installed: 1303s autopkgtest-satdep 1303s 0 upgraded, 1 newly installed, 0 to remove and 188 not upgraded. 1303s Need to get 0 B/700 B of archives. 1303s After this operation, 0 B of additional disk space will be used. 1303s Get:1 /tmp/autopkgtest.jeJ5YQ/2-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [700 B] 1303s Selecting previously unselected package autopkgtest-satdep. 1303s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76756 files and directories currently installed.) 1303s Preparing to unpack .../2-autopkgtest-satdep.deb ... 1303s Unpacking autopkgtest-satdep (0) ... 1303s Setting up autopkgtest-satdep (0) ... 1305s (Reading database ... 76756 files and directories currently installed.) 1305s Removing autopkgtest-satdep (0) ... 1305s autopkgtest [02:25:15]: test dipole: [----------------------- 1305s LAMMPS (7 Feb 2024 - Update 1) 1305s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1305s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1305s using 1 OpenMP thread(s) per MPI task 1305s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 1305s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 1305s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 1305s 2 by 1 by 1 MPI processor grid 1305s Created 200 atoms 1305s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 1305s create_atoms CPU = 0.001 seconds 1305s Setting atom values ... 1305s 200 settings made for mass 1305s Setting atom values ... 1305s 200 settings made for dipole/random 1305s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1305s Neighbor list info ... 1305s update: every = 1 steps, delay = 0 steps, check = yes 1305s max neighbors/atom: 2000, page size: 100000 1305s master list distance cutoff = 2.8 1305s ghost atom cutoff = 2.8 1305s binsize = 1.4, bins = 13 13 2 1305s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1305s (1) pair lj/cut/dipole/cut, perpetual 1305s attributes: half, newton on 1305s pair build: half/bin/atomonly/newton 1305s stencil: half/bin/2d 1305s bin: standard 1305s Setting up Verlet run ... 1305s Unit style : lj 1305s Current step : 0 1305s Time step : 0.005 1305s Per MPI rank memory allocation (min/avg/max) = 5.049 | 5.049 | 5.049 Mbytes 1305s Step Temp E_pair c_erot TotEng Press 1305s 0 0 -2.1909822 0 -2.1909822 -2.5750971 1305s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 1306s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 1306s 1500 0.4211022 -2.8019061 0.19532181 -2.3829095 0.18067145 1306s 2000 0.39019874 -2.7914862 0.22407011 -2.4032384 -0.40912648 1306s 2500 0.40189542 -2.8134715 0.24278607 -2.4135855 -0.33547386 1306s 3000 0.45253597 -2.8432831 0.22668907 -2.3930098 0.031945804 1306s 3500 0.45543566 -2.80999 0.19086399 -2.3568315 0.029485295 1306s 4000 0.40085091 -2.7761517 0.21847799 -2.3773051 -0.033769965 1306s 4500 0.40189931 -2.7615835 0.20362841 -2.3616937 -0.17414063 1306s 5000 0.41734987 -2.7649581 0.19662779 -2.349695 -0.36355203 1306s 5500 0.39968404 -2.7679046 0.21787398 -2.370219 -0.2095 1306s 6000 0.40475829 -2.8111506 0.26462853 -2.4084161 -0.073266954 1306s 6500 0.41521558 -2.7828455 0.21593344 -2.369706 0.044857105 1306s 7000 0.37923394 -2.7298781 0.19612107 -2.3525403 -0.41777291 1306s 7500 0.42362281 -2.8061905 0.22489406 -2.3846858 0.26268515 1306s 8000 0.43091638 -2.8618864 0.27325823 -2.4331247 -0.4441066 1306s 8500 0.4921082 -2.8591309 0.21247682 -2.3694833 -0.1929702 1306s 9000 0.42828025 -2.7900322 0.20827254 -2.3638934 -0.29757579 1306s 9500 0.41689981 -2.7717449 0.21413721 -2.3569296 -0.16341068 1306s 10000 0.46694926 -2.8131859 0.21390049 -2.3485714 -0.37713307 1306s Loop time of 0.556581 on 2 procs for 10000 steps with 200 atoms 1306s 1306s Performance: 7761673.050 tau/day, 17966.836 timesteps/s, 3.593 Matom-step/s 1306s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 1306s 1306s MPI task timing breakdown: 1306s Section | min time | avg time | max time |%varavg| %total 1306s --------------------------------------------------------------- 1306s Pair | 0.33298 | 0.3491 | 0.36522 | 2.7 | 62.72 1306s Neigh | 0.018454 | 0.018947 | 0.019439 | 0.4 | 3.40 1306s Comm | 0.11633 | 0.13421 | 0.1521 | 4.9 | 24.11 1306s Output | 0.00041109 | 0.00080982 | 0.0012085 | 0.0 | 0.15 1306s Modify | 0.034166 | 0.035201 | 0.036237 | 0.6 | 6.32 1306s Other | | 0.01831 | | | 3.29 1306s 1306s Nlocal: 100 ave 101 max 99 min 1306s Histogram: 1 0 0 0 0 0 0 0 0 1 1306s Nghost: 129 ave 129 max 129 min 1306s Histogram: 2 0 0 0 0 0 0 0 0 0 1306s Neighs: 827.5 ave 843 max 812 min 1306s Histogram: 1 0 0 0 0 0 0 0 0 1 1306s 1306s Total # of neighbors = 1655 1306s Ave neighs/atom = 8.275 1306s Neighbor list builds = 679 1306s Dangerous builds = 0 1306s Total wall time: 0:00:00 1306s LAMMPS (7 Feb 2024 - Update 1) 1307s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1307s using 1 OpenMP thread(s) per MPI task 1307s WARNING: Atom style hybrid defines both, per-type and per-atom masses; both must be set, but only per-atom masses will be used (src/atom_vec_hybrid.cpp:132) 1307s Lattice spacing in x,y,z = 1.6903085 1.6903085 1.6903085 1307s Created orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 1307s 1 by 1 by 1 MPI processor grid 1307s Created 200 atoms 1307s using lattice units in orthogonal box = (0 0 -0.84515425) to (16.903085 16.903085 0.84515425) 1307s create_atoms CPU = 0.001 seconds 1307s Setting atom values ... 1307s 200 settings made for mass 1307s Setting atom values ... 1307s 200 settings made for dipole/random 1307s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1307s Neighbor list info ... 1307s update: every = 1 steps, delay = 0 steps, check = yes 1307s max neighbors/atom: 2000, page size: 100000 1307s master list distance cutoff = 2.8 1307s ghost atom cutoff = 2.8 1307s binsize = 1.4, bins = 13 13 2 1307s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1307s (1) pair lj/cut/dipole/cut, perpetual 1307s attributes: half, newton on 1307s pair build: half/bin/atomonly/newton 1307s stencil: half/bin/2d 1307s bin: standard 1307s Setting up Verlet run ... 1307s Unit style : lj 1307s Current step : 0 1307s Time step : 0.005 1307s Per MPI rank memory allocation (min/avg/max) = 5.05 | 5.05 | 5.05 Mbytes 1307s Step Temp E_pair c_erot TotEng Press 1307s 0 0 -2.1909822 0 -2.1909822 -2.5750971 1307s 500 0.39335419 -2.7940623 0.20683255 -2.4026749 -0.24768899 1307s 1000 0.45259485 -2.8743423 0.22311811 -2.4240104 -0.14864606 1307s 1500 0.42110221 -2.8019062 0.19532181 -2.3829095 0.18067141 1307s 2000 0.39019964 -2.7914873 0.2240704 -2.4032387 -0.40914108 1307s 2500 0.40258219 -2.8140936 0.24274448 -2.4135243 -0.33941924 1307s 3000 0.41800133 -2.8282056 0.24466746 -2.4122942 -0.090527465 1307s 3500 0.40116089 -2.7573067 0.18791549 -2.3581517 -0.10988473 1307s 4000 0.44069383 -2.8320262 0.23306586 -2.3935358 -0.16090586 1307s 4500 0.39984934 -2.7780055 0.2316558 -2.3801554 -0.060493508 1307s 5000 0.38478499 -2.7506484 0.22192236 -2.3677873 -0.20522733 1307s 5500 0.41563657 -2.7772758 0.21967501 -2.3637174 -0.21224098 1307s 6000 0.4784307 -2.8050644 0.19178566 -2.3290259 -0.084370417 1307s 6500 0.45915752 -2.8043874 0.21761744 -2.3475257 0.044744498 1307s 7000 0.45492064 -2.7795535 0.20340455 -2.3269074 -0.027924625 1307s 7500 0.41266295 -2.7515872 0.22903767 -2.3409876 -0.43730101 1307s 8000 0.41905675 -2.7281536 0.19413869 -2.3111921 -0.020762772 1307s 8500 0.42951176 -2.7616497 0.22863785 -2.3342855 -0.18867239 1307s 9000 0.42532413 -2.748856 0.21378021 -2.3256584 0.015079949 1307s 9500 0.42237159 -2.7266142 0.20255034 -2.3063545 -0.15538561 1307s 10000 0.40758268 -2.778401 0.2746675 -2.3728562 -0.20811978 1307s Loop time of 0.838032 on 1 procs for 10000 steps with 200 atoms 1307s 1307s Performance: 5154934.879 tau/day, 11932.720 timesteps/s, 2.387 Matom-step/s 1307s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 1307s 1307s MPI task timing breakdown: 1307s Section | min time | avg time | max time |%varavg| %total 1307s --------------------------------------------------------------- 1307s Pair | 0.68564 | 0.68564 | 0.68564 | 0.0 | 81.82 1307s Neigh | 0.036366 | 0.036366 | 0.036366 | 0.0 | 4.34 1307s Comm | 0.040841 | 0.040841 | 0.040841 | 0.0 | 4.87 1307s Output | 0.00037177 | 0.00037177 | 0.00037177 | 0.0 | 0.04 1307s Modify | 0.065471 | 0.065471 | 0.065471 | 0.0 | 7.81 1307s Other | | 0.009345 | | | 1.12 1307s 1307s Nlocal: 200 ave 200 max 200 min 1307s Histogram: 1 0 0 0 0 0 0 0 0 0 1307s Nghost: 162 ave 162 max 162 min 1307s Histogram: 1 0 0 0 0 0 0 0 0 0 1307s Neighs: 1625 ave 1625 max 1625 min 1307s Histogram: 1 0 0 0 0 0 0 0 0 0 1307s 1307s Total # of neighbors = 1625 1307s Ave neighs/atom = 8.125 1307s Neighbor list builds = 673 1307s Dangerous builds = 0 1307s Total wall time: 0:00:00 1307s run: OK 1308s autopkgtest [02:25:18]: test dipole: -----------------------] 1308s dipole PASS 1308s autopkgtest [02:25:18]: test dipole: - - - - - - - - - - results - - - - - - - - - - 1308s autopkgtest [02:25:18]: test ellipse: preparing testbed 1310s Reading package lists... 1311s Building dependency tree... 1311s Reading state information... 1311s Starting pkgProblemResolver with broken count: 0 1311s Starting 2 pkgProblemResolver with broken count: 0 1311s Done 1311s The following NEW packages will be installed: 1311s autopkgtest-satdep 1311s 0 upgraded, 1 newly installed, 0 to remove and 188 not upgraded. 1311s Need to get 0 B/704 B of archives. 1311s After this operation, 0 B of additional disk space will be used. 1311s Get:1 /tmp/autopkgtest.jeJ5YQ/3-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 1312s Selecting previously unselected package autopkgtest-satdep. 1312s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76756 files and directories currently installed.) 1312s Preparing to unpack .../3-autopkgtest-satdep.deb ... 1312s Unpacking autopkgtest-satdep (0) ... 1312s Setting up autopkgtest-satdep (0) ... 1314s (Reading database ... 76756 files and directories currently installed.) 1314s Removing autopkgtest-satdep (0) ... 1314s autopkgtest [02:25:24]: test ellipse: [----------------------- 1314s LAMMPS (7 Feb 2024 - Update 1) 1314s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1314s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1314s using 1 OpenMP thread(s) per MPI task 1314s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 1314s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1314s 2 by 1 by 1 MPI processor grid 1314s Created 400 atoms 1314s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1314s create_atoms CPU = 0.001 seconds 1314s Setting atom values ... 1314s 45 settings made for type/fraction 1314s Setting atom values ... 1314s 355 settings made for mass 1314s Setting atom values ... 1314s 45 settings made for mass 1314s Setting atom values ... 1314s 355 settings made for shape 1314s Setting atom values ... 1314s 45 settings made for shape 1314s Setting atom values ... 1314s 400 settings made for quat/random 1314s 355 atoms in group spheroid 1314s 1314s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 1314s 1314s Your simulation uses code contributions which should be cited: 1314s - pair gayberne command: doi:10.1063/1.3058435 1314s The log file lists these citations in BibTeX format. 1314s 1314s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 1314s 1314s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1314s Neighbor list info ... 1314s update: every = 1 steps, delay = 0 steps, check = yes 1314s max neighbors/atom: 2000, page size: 100000 1314s master list distance cutoff = 4.8 1314s ghost atom cutoff = 4.8 1314s binsize = 2.4, bins = 59 59 3 1314s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1314s (1) pair gayberne, perpetual 1314s attributes: half, newton on 1314s pair build: half/bin/atomonly/newton 1314s stencil: half/bin/2d 1314s bin: standard 1314s Setting up Verlet run ... 1314s Unit style : lj 1314s Current step : 0 1314s Time step : 0.002 1314s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 1314s Step c_rot E_pair TotEng Press Volume 1314s 0 2.2718861 0 2.394 0.04788 20000 1314s 100 1.7443419 0 1.8381003 0.035765442 20557.278 1314s 200 2.2768798 0 2.3992621 0.046544845 20618.928 1314s 300 1.8573086 0 1.9571389 0.04239709 18464.842 1314s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 1314s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 1314s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 1314s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 1314s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 1314s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 1315s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 1315s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 1315s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 1315s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 1315s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 1315s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 1315s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 1315s 1700 1.9434093 -3.2434441 -1.3043926 0.72465776 1136.9866 1315s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 1315s 1900 2.0618126 -3.2264372 -1.162807 0.93455597 1155.8306 1315s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 1315s Loop time of 0.482291 on 2 procs for 2000 steps with 400 atoms 1315s 1315s Performance: 716580.553 tau/day, 4146.878 timesteps/s, 1.659 Matom-step/s 1315s 99.2% CPU use with 2 MPI tasks x 1 OpenMP threads 1315s 1315s MPI task timing breakdown: 1315s Section | min time | avg time | max time |%varavg| %total 1315s --------------------------------------------------------------- 1315s Pair | 0.2848 | 0.29888 | 0.31296 | 2.6 | 61.97 1315s Neigh | 0.012023 | 0.012408 | 0.012793 | 0.3 | 2.57 1315s Comm | 0.027487 | 0.041199 | 0.054911 | 6.8 | 8.54 1315s Output | 0.014691 | 0.014874 | 0.015057 | 0.1 | 3.08 1315s Modify | 0.10728 | 0.10819 | 0.1091 | 0.3 | 22.43 1315s Other | | 0.006734 | | | 1.40 1315s 1315s Nlocal: 200 ave 204 max 196 min 1315s Histogram: 1 0 0 0 0 0 0 0 0 1 1315s Nghost: 198.5 ave 200 max 197 min 1315s Histogram: 1 0 0 0 0 0 0 0 0 1 1315s Neighs: 1510.5 ave 1546 max 1475 min 1315s Histogram: 1 0 0 0 0 0 0 0 0 1 1315s 1315s Total # of neighbors = 3021 1315s Ave neighs/atom = 7.5525 1315s Neighbor list builds = 351 1315s Dangerous builds = 0 1315s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1315s Setting up Verlet run ... 1315s Unit style : lj 1315s Current step : 2000 1315s Time step : 0.002 1315s Per MPI rank memory allocation (min/avg/max) = 6.898 | 6.898 | 6.898 Mbytes 1315s Step c_rot E_pair TotEng Press Volume 1315s 2000 1.894614 -3.3964158 -1.4932323 0.69021878 1125.7713 1315s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 1315s 2200 1.9098636 -3.4103342 -1.5286928 0.58806421 1125.7713 1315s 2300 1.9069019 -3.4099452 -1.610028 0.63472536 1125.7713 1315s 2400 1.9773105 -3.4856993 -1.5268536 0.68904913 1125.7713 1315s 2500 2.0027582 -3.5144592 -1.4900205 0.59925284 1125.7713 1315s 2600 1.9616624 -3.4744356 -1.5230915 0.26873751 1125.7713 1315s 2700 1.8601147 -3.3625731 -1.487211 0.68399849 1125.7713 1315s 2800 1.8194349 -3.3190942 -1.5148089 0.6253534 1125.7713 1315s 2900 1.8465285 -3.3451867 -1.5508324 0.60146161 1125.7713 1315s 3000 1.8894697 -3.3918161 -1.5180286 0.6121204 1125.7713 1315s 3100 1.8667782 -3.3664981 -1.5276073 0.54220867 1125.7713 1315s 3200 1.8235755 -3.3205753 -1.5178132 0.82786428 1125.7713 1315s 3300 1.7937373 -3.2889154 -1.4975068 0.57067419 1125.7713 1315s 3400 1.828955 -3.3291496 -1.5067653 1.0360542 1125.7713 1315s 3500 1.8536352 -3.3525756 -1.5177124 0.56578139 1125.7713 1315s 3600 1.7698175 -3.2647143 -1.5345765 0.50355355 1125.7713 1315s 3700 1.7690567 -3.2653073 -1.4812992 0.7916524 1125.7713 1315s 3800 1.8637674 -3.3670314 -1.5049293 0.58377083 1125.7713 1315s 3900 1.9053975 -3.4123772 -1.4973185 0.64862786 1125.7713 1315s 4000 1.878375 -3.3835516 -1.5382418 0.73838477 1125.7713 1315s Loop time of 0.494877 on 2 procs for 2000 steps with 400 atoms 1315s 1315s Performance: 698355.191 tau/day, 4041.407 timesteps/s, 1.617 Matom-step/s 1315s 98.1% CPU use with 2 MPI tasks x 1 OpenMP threads 1315s 1315s MPI task timing breakdown: 1315s Section | min time | avg time | max time |%varavg| %total 1315s --------------------------------------------------------------- 1315s Pair | 0.35167 | 0.36262 | 0.37357 | 1.8 | 73.27 1315s Neigh | 0.0031889 | 0.0032056 | 0.0032223 | 0.0 | 0.65 1315s Comm | 0.031113 | 0.041785 | 0.052456 | 5.2 | 8.44 1315s Output | 0.015606 | 0.015802 | 0.015998 | 0.2 | 3.19 1315s Modify | 0.064506 | 0.065079 | 0.065653 | 0.2 | 13.15 1315s Other | | 0.006385 | | | 1.29 1315s 1315s Nlocal: 200 ave 203 max 197 min 1315s Histogram: 1 0 0 0 0 0 0 0 0 1 1315s Nghost: 207.5 ave 228 max 187 min 1315s Histogram: 1 0 0 0 0 0 0 0 0 1 1315s Neighs: 1548.5 ave 1608 max 1489 min 1315s Histogram: 1 0 0 0 0 0 0 0 0 1 1315s 1315s Total # of neighbors = 3097 1315s Ave neighs/atom = 7.7425 1315s Neighbor list builds = 45 1315s Dangerous builds = 0 1315s Total wall time: 0:00:00 1316s LAMMPS (7 Feb 2024 - Update 1) 1317s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1317s using 1 OpenMP thread(s) per MPI task 1317s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 1317s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1317s 1 by 1 by 1 MPI processor grid 1317s Created 400 atoms 1317s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1317s create_atoms CPU = 0.001 seconds 1317s Setting atom values ... 1317s 45 settings made for type/fraction 1317s Setting atom values ... 1317s 355 settings made for mass 1317s Setting atom values ... 1317s 45 settings made for mass 1317s Setting atom values ... 1317s 355 settings made for shape 1317s Setting atom values ... 1317s 45 settings made for shape 1317s Setting atom values ... 1317s 400 settings made for quat/random 1317s 355 atoms in group spheroid 1317s 1317s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 1317s 1317s Your simulation uses code contributions which should be cited: 1317s - pair gayberne command: doi:10.1063/1.3058435 1317s The log file lists these citations in BibTeX format. 1317s 1317s CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE 1317s 1317s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1317s Neighbor list info ... 1317s update: every = 1 steps, delay = 0 steps, check = yes 1317s max neighbors/atom: 2000, page size: 100000 1317s master list distance cutoff = 4.8 1317s ghost atom cutoff = 4.8 1317s binsize = 2.4, bins = 59 59 3 1317s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1317s (1) pair gayberne, perpetual 1317s attributes: half, newton on 1317s pair build: half/bin/atomonly/newton 1317s stencil: half/bin/2d 1317s bin: standard 1317s Setting up Verlet run ... 1317s Unit style : lj 1317s Current step : 0 1317s Time step : 0.002 1317s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 1317s Step c_rot E_pair TotEng Press Volume 1317s 0 2.2718861 0 2.394 0.04788 20000 1317s 100 1.7443419 0 1.8381003 0.035765442 20557.278 1317s 200 2.2768798 0 2.3992621 0.046544845 20618.928 1317s 300 1.8573086 0 1.9571389 0.04239709 18464.842 1317s 400 2.1707875 -0.00045989278 2.2870073 0.066725499 13701.839 1317s 500 1.9710982 -0.014545321 2.0486111 0.12205188 8490.5214 1317s 600 2.0818888 -0.21572832 1.8356955 0.22333255 4697.3035 1317s 700 2.1551458 -0.68175426 1.4003368 0.60385996 2541.157 1317s 800 1.8879651 -1.6357045 0.21794544 1.0826917 1444.4484 1317s 900 2.1993533 -3.0664068 -0.91036919 3.2142529 925.96691 1317s 1000 1.4285977 -4.3962037 -2.9651113 3.1830461 744.91324 1317s 1100 1.933074 -4.9398703 -3.0147256 1.4694937 715.30906 1317s 1200 2.0872875 -4.5711608 -2.4689861 1.4091154 757.68606 1317s 1300 1.8950043 -4.1568789 -2.2487345 0.19138859 846.69407 1317s 1400 2.1773467 -3.7905723 -1.6164698 0.55639059 930.77026 1317s 1500 1.934954 -3.5505876 -1.6187812 0.2572587 1020.2803 1317s 1600 2.083004 -3.2707357 -1.1794873 0.68661802 1088.5587 1317s 1700 1.9434093 -3.2434441 -1.3043926 0.72465775 1136.9866 1317s 1800 1.9731416 -3.2692426 -1.3364608 0.52887379 1162.1022 1317s 1900 2.0618126 -3.2264372 -1.162807 0.93455596 1155.8306 1317s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 1317s Loop time of 0.806185 on 1 procs for 2000 steps with 400 atoms 1317s 1317s Performance: 428685.714 tau/day, 2480.820 timesteps/s, 992.328 katom-step/s 1317s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 1317s 1317s MPI task timing breakdown: 1317s Section | min time | avg time | max time |%varavg| %total 1317s --------------------------------------------------------------- 1317s Pair | 0.56322 | 0.56322 | 0.56322 | 0.0 | 69.86 1317s Neigh | 0.023898 | 0.023898 | 0.023898 | 0.0 | 2.96 1317s Comm | 0.012574 | 0.012574 | 0.012574 | 0.0 | 1.56 1317s Output | 0.019496 | 0.019496 | 0.019496 | 0.0 | 2.42 1317s Modify | 0.18238 | 0.18238 | 0.18238 | 0.0 | 22.62 1317s Other | | 0.004617 | | | 0.57 1317s 1317s Nlocal: 400 ave 400 max 400 min 1317s Histogram: 1 0 0 0 0 0 0 0 0 0 1317s Nghost: 247 ave 247 max 247 min 1317s Histogram: 1 0 0 0 0 0 0 0 0 0 1317s Neighs: 3021 ave 3021 max 3021 min 1317s Histogram: 1 0 0 0 0 0 0 0 0 0 1317s 1317s Total # of neighbors = 3021 1317s Ave neighs/atom = 7.5525 1317s Neighbor list builds = 351 1317s Dangerous builds = 0 1317s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1317s Setting up Verlet run ... 1317s Unit style : lj 1317s Current step : 2000 1317s Time step : 0.002 1317s Per MPI rank memory allocation (min/avg/max) = 6.939 | 6.939 | 6.939 Mbytes 1317s Step c_rot E_pair TotEng Press Volume 1317s 2000 1.894614 -3.3964158 -1.4932323 0.69021875 1125.7713 1317s 2100 1.8880098 -3.3875135 -1.4857102 0.21017294 1125.7713 1317s 2200 1.9098635 -3.4103342 -1.5286928 0.58806422 1125.7713 1317s 2300 1.9069019 -3.4099452 -1.610028 0.63472566 1125.7713 1317s 2400 1.9773106 -3.4856993 -1.5268537 0.6890488 1125.7713 1317s 2500 2.0027577 -3.5144587 -1.4900206 0.59925482 1125.7713 1317s 2600 1.9616627 -3.4744359 -1.5230914 0.26873643 1125.7713 1317s 2700 1.8601143 -3.3625727 -1.4872111 0.68399923 1125.7713 1317s 2800 1.8194315 -3.3190907 -1.5148099 0.62535541 1125.7713 1317s 2900 1.8465014 -3.3451581 -1.5508257 0.60156027 1125.7713 1317s 3000 1.8894895 -3.391836 -1.5180354 0.61205823 1125.7713 1317s 3100 1.8668465 -3.3665673 -1.5276094 0.54215927 1125.7713 1317s 3200 1.8233438 -3.3203287 -1.5178269 0.82854887 1125.7713 1317s 3300 1.794649 -3.2898698 -1.4973919 0.56704285 1125.7713 1317s 3400 1.8290008 -3.3295346 -1.5070098 1.0356016 1125.7713 1317s 3500 1.8535551 -3.3522046 -1.5121703 0.5801663 1125.7713 1317s 3600 1.7849961 -3.2815422 -1.5326244 0.45764466 1125.7713 1317s 3700 1.7695363 -3.2652329 -1.4772023 0.84882871 1125.7713 1317s 3800 1.8713051 -3.3743092 -1.5234548 0.38004095 1125.7713 1317s 3900 1.9336013 -3.4411866 -1.4980326 0.64679675 1125.7713 1317s 4000 1.9271117 -3.4346745 -1.5345035 0.4492419 1125.7713 1317s Loop time of 0.870251 on 1 procs for 2000 steps with 400 atoms 1317s 1317s Performance: 397126.944 tau/day, 2298.188 timesteps/s, 919.275 katom-step/s 1317s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 1317s 1317s MPI task timing breakdown: 1317s Section | min time | avg time | max time |%varavg| %total 1317s --------------------------------------------------------------- 1317s Pair | 0.70332 | 0.70332 | 0.70332 | 0.0 | 80.82 1317s Neigh | 0.0062753 | 0.0062753 | 0.0062753 | 0.0 | 0.72 1317s Comm | 0.011864 | 0.011864 | 0.011864 | 0.0 | 1.36 1317s Output | 0.019506 | 0.019506 | 0.019506 | 0.0 | 2.24 1317s Modify | 0.12596 | 0.12596 | 0.12596 | 0.0 | 14.47 1317s Other | | 0.003328 | | | 0.38 1317s 1317s Nlocal: 400 ave 400 max 400 min 1317s Histogram: 1 0 0 0 0 0 0 0 0 0 1317s Nghost: 242 ave 242 max 242 min 1317s Histogram: 1 0 0 0 0 0 0 0 0 0 1317s Neighs: 3080 ave 3080 max 3080 min 1317s Histogram: 1 0 0 0 0 0 0 0 0 0 1317s 1317s Total # of neighbors = 3080 1317s Ave neighs/atom = 7.7 1317s Neighbor list builds = 45 1317s Dangerous builds = 0 1317s Total wall time: 0:00:01 1318s LAMMPS (7 Feb 2024 - Update 1) 1318s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1318s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1318s using 1 OpenMP thread(s) per MPI task 1318s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 1318s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1318s 2 by 1 by 1 MPI processor grid 1318s Created 400 atoms 1318s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1318s create_atoms CPU = 0.001 seconds 1318s Setting atom values ... 1318s 45 settings made for type/fraction 1318s Setting atom values ... 1318s 355 settings made for mass 1318s Setting atom values ... 1318s 45 settings made for mass 1318s Setting atom values ... 1318s 355 settings made for shape 1318s Setting atom values ... 1318s 45 settings made for shape 1318s Setting atom values ... 1318s 400 settings made for quat/random 1318s 355 atoms in group spheroid 1318s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1318s Neighbor list info ... 1318s update: every = 1 steps, delay = 0 steps, check = yes 1318s max neighbors/atom: 2000, page size: 100000 1318s master list distance cutoff = 4.8 1318s ghost atom cutoff = 4.8 1318s binsize = 2.4, bins = 59 59 3 1318s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1318s (1) pair resquared, perpetual 1318s attributes: half, newton on 1318s pair build: half/bin/atomonly/newton 1318s stencil: half/bin/2d 1318s bin: standard 1318s Setting up Verlet run ... 1318s Unit style : lj 1318s Current step : 0 1318s Time step : 0.002 1318s Per MPI rank memory allocation (min/avg/max) = 4.744 | 4.744 | 4.744 Mbytes 1318s Step c_rot E_pair TotEng Press Volume 1318s 0 2.2718861 0 2.394 0.04788 20000 1318s 100 1.7443419 0 1.8381003 0.035765442 20557.278 1318s 200 2.2768798 0 2.3992621 0.046544845 20618.928 1318s 300 1.8573086 0 1.9571389 0.04239709 18464.842 1318s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 1318s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 1318s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 1318s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 1318s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 1318s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 1318s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 1318s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 1318s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 1318s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 1318s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 1318s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 1318s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 1318s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 1318s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 1318s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 1318s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 1318s Loop time of 0.674624 on 2 procs for 2000 steps with 400 atoms 1318s 1318s Performance: 512285.098 tau/day, 2964.613 timesteps/s, 1.186 Matom-step/s 1318s 98.8% CPU use with 2 MPI tasks x 1 OpenMP threads 1318s 1318s MPI task timing breakdown: 1318s Section | min time | avg time | max time |%varavg| %total 1318s --------------------------------------------------------------- 1318s Pair | 0.48661 | 0.49696 | 0.5073 | 1.5 | 73.66 1318s Neigh | 0.011698 | 0.011931 | 0.012164 | 0.2 | 1.77 1318s Comm | 0.030456 | 0.041102 | 0.051748 | 5.3 | 6.09 1318s Output | 0.014496 | 0.014671 | 0.014846 | 0.1 | 2.17 1318s Modify | 0.10389 | 0.10392 | 0.10394 | 0.0 | 15.40 1318s Other | | 0.006048 | | | 0.90 1318s 1318s Nlocal: 200 ave 206 max 194 min 1318s Histogram: 1 0 0 0 0 0 0 0 0 1 1318s Nghost: 168.5 ave 169 max 168 min 1318s Histogram: 1 0 0 0 0 0 0 0 0 1 1318s Neighs: 941 ave 998 max 884 min 1318s Histogram: 1 0 0 0 0 0 0 0 0 1 1318s 1318s Total # of neighbors = 1882 1318s Ave neighs/atom = 4.705 1318s Neighbor list builds = 415 1318s Dangerous builds = 0 1318s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1318s Setting up Verlet run ... 1318s Unit style : lj 1318s Current step : 2000 1318s Time step : 0.002 1318s Per MPI rank memory allocation (min/avg/max) = 6.889 | 6.889 | 6.889 Mbytes 1318s Step c_rot E_pair TotEng Press Volume 1318s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 1318s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 1319s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 1319s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 1319s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 1319s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 1319s 2600 1.9587508 0.18695271 2.1506896 1.3513902 1669.0751 1319s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 1319s 2800 1.9870267 0.15716585 2.1207709 1.2045104 1669.0751 1319s 2900 1.9230662 0.224487 2.1353571 1.4964288 1669.0751 1319s 3000 2.0042113 0.13903203 2.1149787 1.2100649 1669.0751 1319s 3100 1.9543695 0.19149462 2.0984705 1.3409712 1669.0751 1319s 3200 1.9991114 0.14441986 2.1292354 1.1756472 1669.0751 1319s 3300 1.9629782 0.18246612 2.1463675 1.3162684 1669.0751 1319s 3400 1.9403529 0.20630278 2.168704 1.4952817 1669.0751 1319s 3500 1.9887414 0.15531284 2.1485278 1.2530438 1669.0751 1319s 3600 1.9732705 0.17171749 2.1755758 1.2958612 1669.0751 1319s 3700 2.0072859 0.13576438 2.1212392 1.1421261 1669.0751 1319s 3800 1.9581319 0.18762046 2.1743395 1.371088 1669.0751 1319s 3900 1.9761472 0.16864775 2.1429629 1.3037468 1669.0751 1319s 4000 1.9615776 0.18391221 2.1244703 1.4180052 1669.0751 1319s Loop time of 1.04418 on 2 procs for 2000 steps with 400 atoms 1319s 1319s Performance: 330978.864 tau/day, 1915.387 timesteps/s, 766.155 katom-step/s 1319s 99.6% CPU use with 2 MPI tasks x 1 OpenMP threads 1319s 1319s MPI task timing breakdown: 1319s Section | min time | avg time | max time |%varavg| %total 1319s --------------------------------------------------------------- 1319s Pair | 0.88325 | 0.89791 | 0.91257 | 1.5 | 85.99 1319s Neigh | 0.0026133 | 0.0027089 | 0.0028045 | 0.2 | 0.26 1319s Comm | 0.044105 | 0.058774 | 0.073444 | 6.1 | 5.63 1319s Output | 0.014761 | 0.014924 | 0.015087 | 0.1 | 1.43 1319s Modify | 0.063313 | 0.064008 | 0.064704 | 0.3 | 6.13 1319s Other | | 0.005853 | | | 0.56 1319s 1319s Nlocal: 200 ave 204 max 196 min 1319s Histogram: 1 0 0 0 0 0 0 0 0 1 1319s Nghost: 159.5 ave 161 max 158 min 1319s Histogram: 1 0 0 0 0 0 0 0 0 1 1319s Neighs: 936 ave 1007 max 865 min 1319s Histogram: 1 0 0 0 0 0 0 0 0 1 1319s 1319s Total # of neighbors = 1872 1319s Ave neighs/atom = 4.68 1319s Neighbor list builds = 50 1319s Dangerous builds = 0 1319s Total wall time: 0:00:01 1320s LAMMPS (7 Feb 2024 - Update 1) 1321s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1321s using 1 OpenMP thread(s) per MPI task 1321s Lattice spacing in x,y,z = 7.0710678 7.0710678 7.0710678 1321s Created orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1321s 1 by 1 by 1 MPI processor grid 1321s Created 400 atoms 1321s using lattice units in orthogonal box = (0 0 -3.5355339) to (141.42136 141.42136 3.5355339) 1321s create_atoms CPU = 0.001 seconds 1321s Setting atom values ... 1321s 45 settings made for type/fraction 1321s Setting atom values ... 1321s 355 settings made for mass 1321s Setting atom values ... 1321s 45 settings made for mass 1321s Setting atom values ... 1321s 355 settings made for shape 1321s Setting atom values ... 1321s 45 settings made for shape 1321s Setting atom values ... 1321s 400 settings made for quat/random 1321s 355 atoms in group spheroid 1321s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1321s Neighbor list info ... 1321s update: every = 1 steps, delay = 0 steps, check = yes 1321s max neighbors/atom: 2000, page size: 100000 1321s master list distance cutoff = 4.8 1321s ghost atom cutoff = 4.8 1321s binsize = 2.4, bins = 59 59 3 1321s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1321s (1) pair resquared, perpetual 1321s attributes: half, newton on 1321s pair build: half/bin/atomonly/newton 1321s stencil: half/bin/2d 1321s bin: standard 1321s Setting up Verlet run ... 1321s Unit style : lj 1321s Current step : 0 1321s Time step : 0.002 1321s Per MPI rank memory allocation (min/avg/max) = 4.753 | 4.753 | 4.753 Mbytes 1321s Step c_rot E_pair TotEng Press Volume 1321s 0 2.2718861 0 2.394 0.04788 20000 1321s 100 1.7443419 0 1.8381003 0.035765442 20557.278 1321s 200 2.2768798 0 2.3992621 0.046544845 20618.928 1321s 300 1.8573086 0 1.9571389 0.04239709 18464.842 1321s 400 2.1706741 -2.5275641e-05 2.2873225 0.066771565 13701.864 1321s 500 2.012561 0.0079467721 2.063898 0.10816504 8501.4958 1321s 600 2.1428003 0.083982458 2.2020759 0.3340759 4786.6892 1321s 700 2.0449292 0.17309565 2.1718849 0.78086274 2774.9262 1321s 800 1.9528849 0.31804014 2.2520272 1.8059473 1826.0933 1321s 900 1.6296095 0.24347613 1.8589813 1.7120274 1518.1139 1321s 1000 1.9349826 0.13913538 2.1125467 1.3044646 1519.7133 1321s 1100 2.1040629 0.11218748 2.2384236 1.0097965 1751.5229 1321s 1200 1.7801858 0.051922127 1.8564589 0.54836207 2198.0187 1321s 1300 2.3147158 0.049339841 2.390002 0.48871848 2754.4057 1321s 1400 1.754921 0.025804182 1.785499 0.28804529 3305.8359 1321s 1500 2.3701432 0.070771258 2.4523449 0.42290556 3531.1976 1321s 1600 1.7628065 0.054682596 1.830609 0.36138713 3319.2576 1321s 1700 2.2969598 0.130209 2.454872 0.73541699 2721.9102 1321s 1800 1.8253139 0.23039663 2.0810243 1.2065009 2155.7953 1321s 1900 2.017999 0.16257657 2.1664889 1.1654021 1815.9914 1321s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 1321s Loop time of 1.25327 on 1 procs for 2000 steps with 400 atoms 1321s 1321s Performance: 275758.003 tau/day, 1595.822 timesteps/s, 638.329 katom-step/s 1321s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 1321s 1321s MPI task timing breakdown: 1321s Section | min time | avg time | max time |%varavg| %total 1321s --------------------------------------------------------------- 1321s Pair | 1.0041 | 1.0041 | 1.0041 | 0.0 | 80.12 1321s Neigh | 0.024857 | 0.024857 | 0.024857 | 0.0 | 1.98 1321s Comm | 0.011061 | 0.011061 | 0.011061 | 0.0 | 0.88 1321s Output | 0.020103 | 0.020103 | 0.020103 | 0.0 | 1.60 1321s Modify | 0.18846 | 0.18846 | 0.18846 | 0.0 | 15.04 1323s Other | | 0.004691 | | | 0.37 1323s 1323s Nlocal: 400 ave 400 max 400 min 1323s Histogram: 1 0 0 0 0 0 0 0 0 0 1323s Nghost: 212 ave 212 max 212 min 1323s Histogram: 1 0 0 0 0 0 0 0 0 0 1323s Neighs: 1882 ave 1882 max 1882 min 1323s Histogram: 1 0 0 0 0 0 0 0 0 0 1323s 1323s Total # of neighbors = 1882 1323s Ave neighs/atom = 4.705 1323s Neighbor list builds = 415 1323s Dangerous builds = 0 1323s Generated 0 of 1 mixed pair_coeff terms from geometric mixing rule 1323s Setting up Verlet run ... 1323s Unit style : lj 1323s Current step : 2000 1323s Time step : 0.002 1323s Per MPI rank memory allocation (min/avg/max) = 6.917 | 6.917 | 6.917 Mbytes 1323s Step c_rot E_pair TotEng Press Volume 1323s 2000 1.973946 0.17086654 2.1754835 1.2957284 1669.0751 1323s 2100 2.0234333 0.11888043 2.165674 1.056689 1669.0751 1323s 2200 1.9652317 0.18018588 2.1288332 1.3191509 1669.0751 1323s 2300 1.9982484 0.1453846 2.1438911 1.2670661 1669.0751 1323s 2400 1.9752559 0.16967804 2.1177286 1.303768 1669.0751 1323s 2500 1.978203 0.16642164 2.1631435 1.2908362 1669.0751 1323s 2600 1.9587508 0.18695272 2.1506896 1.3513902 1669.0751 1323s 2700 1.9654455 0.17997217 2.1247901 1.3360491 1669.0751 1323s 2800 1.9870267 0.15716584 2.1207709 1.2045103 1669.0751 1323s 2900 1.9230661 0.22448715 2.1353571 1.4964295 1669.0751 1323s 3000 2.0042113 0.13903205 2.1149788 1.2100651 1669.0751 1323s 3100 1.9543696 0.19149451 2.0984704 1.3409708 1669.0751 1323s 3200 1.9991114 0.14441986 2.1292353 1.1756471 1669.0751 1323s 3300 1.9629782 0.18246604 2.1463674 1.3162682 1669.0751 1323s 3400 1.9403526 0.2063031 2.1687041 1.4952828 1669.0751 1323s 3500 1.9887417 0.15531257 2.1485281 1.2530419 1669.0751 1323s 3600 1.9732713 0.17171668 2.1755748 1.2958589 1669.0751 1323s 3700 2.0072841 0.13576627 2.1212376 1.1421332 1669.0751 1323s 3800 1.9581293 0.18762314 2.1743434 1.3710999 1669.0751 1323s 3900 1.9761567 0.16863762 2.1429558 1.303685 1669.0751 1323s 4000 1.9615813 0.18390829 2.1244694 1.4179775 1669.0751 1323s Loop time of 2.08044 on 1 procs for 2000 steps with 400 atoms 1323s 1323s Performance: 166118.962 tau/day, 961.337 timesteps/s, 384.535 katom-step/s 1323s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads 1323s 1323s MPI task timing breakdown: 1323s Section | min time | avg time | max time |%varavg| %total 1323s --------------------------------------------------------------- 1323s Pair | 1.9041 | 1.9041 | 1.9041 | 0.0 | 91.52 1323s Neigh | 0.0056284 | 0.0056284 | 0.0056284 | 0.0 | 0.27 1323s Comm | 0.012926 | 0.012926 | 0.012926 | 0.0 | 0.62 1323s Output | 0.02119 | 0.02119 | 0.02119 | 0.0 | 1.02 1323s Modify | 0.13158 | 0.13158 | 0.13158 | 0.0 | 6.32 1323s Other | | 0.005005 | | | 0.24 1323s 1323s Nlocal: 400 ave 400 max 400 min 1323s Histogram: 1 0 0 0 0 0 0 0 0 0 1323s Nghost: 206 ave 206 max 206 min 1323s Histogram: 1 0 0 0 0 0 0 0 0 0 1323s Neighs: 1872 ave 1872 max 1872 min 1323s Histogram: 1 0 0 0 0 0 0 0 0 0 1323s 1323s Total # of neighbors = 1872 1323s Ave neighs/atom = 4.68 1323s Neighbor list builds = 50 1323s Dangerous builds = 0 1323s Total wall time: 0:00:03 1323s run: OK 1324s autopkgtest [02:25:34]: test ellipse: -----------------------] 1324s autopkgtest [02:25:34]: test ellipse: - - - - - - - - - - results - - - - - - - - - - 1324s ellipse PASS 1324s autopkgtest [02:25:34]: test flow: preparing testbed 1326s Reading package lists... 1326s Building dependency tree... 1326s Reading state information... 1326s Starting pkgProblemResolver with broken count: 0 1326s Starting 2 pkgProblemResolver with broken count: 0 1326s Done 1327s The following NEW packages will be installed: 1327s autopkgtest-satdep 1327s 0 upgraded, 1 newly installed, 0 to remove and 188 not upgraded. 1327s Need to get 0 B/708 B of archives. 1327s After this operation, 0 B of additional disk space will be used. 1327s Get:1 /tmp/autopkgtest.jeJ5YQ/4-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [708 B] 1327s Selecting previously unselected package autopkgtest-satdep. 1327s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76756 files and directories currently installed.) 1327s Preparing to unpack .../4-autopkgtest-satdep.deb ... 1327s Unpacking autopkgtest-satdep (0) ... 1327s Setting up autopkgtest-satdep (0) ... 1329s (Reading database ... 76756 files and directories currently installed.) 1329s Removing autopkgtest-satdep (0) ... 1329s autopkgtest [02:25:39]: test flow: [----------------------- 1330s LAMMPS (7 Feb 2024 - Update 1) 1330s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1330s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1330s using 1 OpenMP thread(s) per MPI task 1330s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 1330s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 1330s 2 by 1 by 1 MPI processor grid 1330s Created 420 atoms 1330s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 1330s create_atoms CPU = 0.000 seconds 1330s 60 atoms in group lower 1330s 60 atoms in group upper 1330s 120 atoms in group boundary 1330s 300 atoms in group flow 1330s Setting atom values ... 1330s 60 settings made for type 1330s Setting atom values ... 1330s 60 settings made for type 1330s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1330s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 1330s Neighbor list info ... 1330s update: every = 1 steps, delay = 5 steps, check = yes 1330s max neighbors/atom: 2000, page size: 100000 1330s master list distance cutoff = 1.42246 1330s ghost atom cutoff = 1.42246 1330s binsize = 0.71123, bins = 37 32 1 1330s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1330s (1) pair lj/cut, perpetual 1330s attributes: half, newton on 1330s pair build: half/bin/atomonly/newton 1330s stencil: half/bin/2d 1330s bin: standard 1330s Setting up Verlet run ... 1330s Unit style : lj 1330s Current step : 0 1330s Time step : 0.003 1330s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 1330s Step Temp E_pair E_mol TotEng Press Volume 1330s 0 1 0 0 0.71190476 0.52314537 571.54286 1330s 500 1.0951876 -0.33403931 0 0.44562996 3.2502319 571.54286 1330s 1000 1 -0.3731019 0 0.33880286 2.8561715 571.54286 1330s 1500 1.0366879 -0.36031105 0 0.37771198 3.0196355 571.54286 1330s 2000 1 -0.41053 0 0.30137476 2.8651912 571.54286 1330s 2500 1.1226657 -0.37033202 0 0.42889907 2.9449242 571.54286 1330s 3000 1 -0.37829439 0 0.33361038 2.724957 571.54286 1330s 3500 1.0214075 -0.4474262 0 0.27971864 2.4340575 571.54286 1330s 4000 1 -0.42466402 0 0.28724075 2.6468652 571.54286 1330s 4500 1.0385223 -0.4060451 0 0.33328387 2.8049948 571.54286 1330s 5000 1 -0.44140506 0 0.2704997 2.5732992 571.54286 1330s 5500 1.0412543 -0.42975001 0 0.31152391 2.5569509 571.54286 1330s 6000 1 -0.40966109 0 0.30224367 2.3906115 571.54286 1330s 6500 1.0821406 -0.37547129 0 0.39490976 2.5922081 571.54286 1330s 7000 1 -0.41060008 0 0.30130468 2.8506205 571.54286 1330s 7500 1.0819999 -0.43038503 0 0.33989586 2.6996672 571.54286 1330s 8000 1 -0.3796336 0 0.33227116 2.5245689 571.54286 1330s 8500 0.94746225 -0.40425285 0 0.27025004 2.5790953 571.54286 1330s 9000 1 -0.4061947 0 0.30571006 2.3866707 571.54286 1330s 9500 1.0336946 -0.4404991 0 0.29539298 2.2934496 571.54286 1330s 10000 1 -0.44465733 0 0.26724744 2.2764313 571.54286 1330s Loop time of 0.17439 on 2 procs for 10000 steps with 420 atoms 1330s 1330s Performance: 14863255.299 tau/day, 57342.806 timesteps/s, 24.084 Matom-step/s 1330s 98.9% CPU use with 2 MPI tasks x 1 OpenMP threads 1330s 1330s MPI task timing breakdown: 1330s Section | min time | avg time | max time |%varavg| %total 1330s --------------------------------------------------------------- 1330s Pair | 0.035822 | 0.035954 | 0.036087 | 0.1 | 20.62 1330s Neigh | 0.023173 | 0.023204 | 0.023235 | 0.0 | 13.31 1330s Comm | 0.065604 | 0.065714 | 0.065824 | 0.0 | 37.68 1330s Output | 0.00036454 | 0.00080838 | 0.0012522 | 0.0 | 0.46 1330s Modify | 0.033971 | 0.034038 | 0.034106 | 0.0 | 19.52 1330s Other | | 0.01467 | | | 8.41 1330s 1330s Nlocal: 210 ave 213 max 207 min 1330s Histogram: 1 0 0 0 0 0 0 0 0 1 1330s Nghost: 50.5 ave 51 max 50 min 1330s Histogram: 1 0 0 0 0 0 0 0 0 1 1330s Neighs: 480.5 ave 492 max 469 min 1330s Histogram: 1 0 0 0 0 0 0 0 0 1 1330s 1330s Total # of neighbors = 961 1330s Ave neighs/atom = 2.2880952 1330s Neighbor list builds = 964 1330s Dangerous builds = 0 1330s Total wall time: 0:00:00 1330s LAMMPS (7 Feb 2024 - Update 1) 1330s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1330s using 1 OpenMP thread(s) per MPI task 1330s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 1330s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 1330s 1 by 1 by 1 MPI processor grid 1330s Created 420 atoms 1330s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 1330s create_atoms CPU = 0.000 seconds 1330s 60 atoms in group lower 1330s 60 atoms in group upper 1330s 120 atoms in group boundary 1330s 300 atoms in group flow 1330s Setting atom values ... 1330s 60 settings made for type 1330s Setting atom values ... 1330s 60 settings made for type 1330s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1330s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 1330s Neighbor list info ... 1330s update: every = 1 steps, delay = 5 steps, check = yes 1330s max neighbors/atom: 2000, page size: 100000 1330s master list distance cutoff = 1.42246 1330s ghost atom cutoff = 1.42246 1330s binsize = 0.71123, bins = 37 32 1 1330s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1330s (1) pair lj/cut, perpetual 1330s attributes: half, newton on 1330s pair build: half/bin/atomonly/newton 1330s stencil: half/bin/2d 1330s bin: standard 1330s Setting up Verlet run ... 1330s Unit style : lj 1330s Current step : 0 1330s Time step : 0.003 1330s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 1330s Step Temp E_pair E_mol TotEng Press Volume 1330s 0 1 0 0 0.71190476 0.52314537 571.54286 1330s 500 1.0644427 -0.31382888 0 0.44395296 3.0013076 571.54286 1330s 1000 1 -0.42965445 0 0.28225032 2.9612165 571.54286 1330s 1500 1.0739874 -0.41189772 0 0.35267901 2.5621951 571.54286 1330s 2000 1 -0.40814263 0 0.30376214 2.9229587 571.54286 1330s 2500 1.1929729 -0.38735055 0 0.46193257 2.8337691 571.54286 1330s 3000 1 -0.44542386 0 0.2664809 2.7214531 571.54286 1330s 3500 1.1553179 -0.42687142 0 0.39560493 2.5109633 571.54286 1330s 4000 1 -0.40604742 0 0.30585734 2.7055928 571.54286 1330s 4500 1.1498154 -0.44055268 0 0.37800642 2.5561154 571.54286 1330s 5000 1 -0.41742254 0 0.29448222 2.4788457 571.54286 1330s 5500 1.014604 -0.42503236 0 0.29726906 2.579664 571.54286 1330s 6000 1 -0.41264837 0 0.29925639 2.5861705 571.54286 1330s 6500 1.1443238 -0.4392768 0 0.37537274 2.2801246 571.54286 1330s 7000 1 -0.38852754 0 0.32337722 2.3294037 571.54286 1330s 7500 1.0568142 -0.42350098 0 0.32885011 2.3953589 571.54286 1330s 8000 1 -0.39343 0 0.31847477 2.5701342 571.54286 1330s 8500 1.0872157 -0.46282796 0 0.3111661 2.2892446 571.54286 1330s 9000 1 -0.402333 0 0.30957177 2.4852035 571.54286 1330s 9500 0.99889786 -0.46870263 0 0.24241751 2.3763314 571.54286 1330s 10000 1 -0.43338695 0 0.27851782 2.405424 571.54286 1330s Loop time of 0.210016 on 1 procs for 10000 steps with 420 atoms 1330s 1330s Performance: 12341935.142 tau/day, 47615.491 timesteps/s, 19.999 Matom-step/s 1330s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 1330s 1330s MPI task timing breakdown: 1330s Section | min time | avg time | max time |%varavg| %total 1330s --------------------------------------------------------------- 1330s Pair | 0.072953 | 0.072953 | 0.072953 | 0.0 | 34.74 1330s Neigh | 0.048564 | 0.048564 | 0.048564 | 0.0 | 23.12 1330s Comm | 0.0080854 | 0.0080854 | 0.0080854 | 0.0 | 3.85 1330s Output | 0.00039118 | 0.00039118 | 0.00039118 | 0.0 | 0.19 1330s Modify | 0.067792 | 0.067792 | 0.067792 | 0.0 | 32.28 1330s Other | | 0.01223 | | | 5.82 1330s 1330s Nlocal: 420 ave 420 max 420 min 1330s Histogram: 1 0 0 0 0 0 0 0 0 0 1330s Nghost: 46 ave 46 max 46 min 1330s Histogram: 1 0 0 0 0 0 0 0 0 0 1330s Neighs: 952 ave 952 max 952 min 1330s Histogram: 1 0 0 0 0 0 0 0 0 0 1330s 1330s Total # of neighbors = 952 1330s Ave neighs/atom = 2.2666667 1330s Neighbor list builds = 996 1330s Dangerous builds = 0 1330s Total wall time: 0:00:00 1331s LAMMPS (7 Feb 2024 - Update 1) 1331s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1331s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1331s using 1 OpenMP thread(s) per MPI task 1331s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 1331s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 1331s 2 by 1 by 1 MPI processor grid 1331s Created 420 atoms 1331s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 1331s create_atoms CPU = 0.001 seconds 1331s 60 atoms in group lower 1331s 60 atoms in group upper 1331s 120 atoms in group boundary 1331s 300 atoms in group flow 1331s Setting atom values ... 1331s 60 settings made for type 1331s Setting atom values ... 1331s 60 settings made for type 1331s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1331s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 1331s Neighbor list info ... 1331s update: every = 1 steps, delay = 5 steps, check = yes 1331s max neighbors/atom: 2000, page size: 100000 1331s master list distance cutoff = 1.42246 1331s ghost atom cutoff = 1.42246 1331s binsize = 0.71123, bins = 37 32 1 1331s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1331s (1) pair lj/cut, perpetual 1331s attributes: half, newton on 1331s pair build: half/bin/atomonly/newton 1331s stencil: half/bin/2d 1331s bin: standard 1331s Setting up Verlet run ... 1331s Unit style : lj 1331s Current step : 0 1331s Time step : 0.003 1331s Per MPI rank memory allocation (min/avg/max) = 3.044 | 3.044 | 3.044 Mbytes 1331s Step Temp E_pair E_mol TotEng Press Volume 1331s 0 1 0 0 0.71190476 0.52314537 571.54286 1331s 500 1.0758737 -0.36090417 0 0.40501541 2.7822308 575.0659 1331s 1000 1 -0.35701441 0 0.35489035 2.0575313 585.71407 1331s 1500 1.2368663 -0.37709732 0 0.50343367 1.4865879 587.193 1331s 2000 1 -0.39362939 0 0.31827537 1.4236 578.9418 1331s 2500 1.2272957 -0.423819 0 0.44989866 1.454461 570.15856 1331s 3000 1 -0.49143429 0 0.22047048 1.5345942 554.98632 1331s 3500 1.2445009 -0.59762587 0 0.28834022 1.8753189 537.01593 1331s 4000 1 -0.69889809 0 0.013006674 2.1402865 521.46673 1331s 4500 1.2185161 -0.73848066 0 0.12898676 2.7425317 507.73058 1331s 5000 1 -0.79158059 0 -0.079675829 3.1146693 502.02129 1331s 5500 1.23812 -0.76063102 0 0.12079254 2.6101517 503.98532 1331s 6000 1 -0.68093927 0 0.030965489 2.4050071 506.73975 1331s 6500 1.2305347 -0.71537739 0 0.16064612 2.0966847 510.57681 1331s 7000 1 -0.69996568 0 0.011939084 2.0829242 513.97036 1331s 7500 1.2387996 -0.67617771 0 0.20572962 1.9857051 511.54835 1331s 8000 1 -0.72135901 0 -0.0094542445 2.3327964 508.8105 1331s 8500 1.2500467 -0.77802894 0 0.11188529 2.2915813 505.72027 1331s 9000 1 -0.77033319 0 -0.058428426 2.4993315 503.47206 1331s 9500 1.2000703 -0.74305547 0 0.11128027 2.3321564 504.5062 1331s 10000 1 -0.72090813 0 -0.0090033642 2.3379679 505.23554 1331s Loop time of 0.198867 on 2 procs for 10000 steps with 420 atoms 1331s 1331s Performance: 13033852.283 tau/day, 50284.924 timesteps/s, 21.120 Matom-step/s 1331s 99.0% CPU use with 2 MPI tasks x 1 OpenMP threads 1331s 1331s MPI task timing breakdown: 1331s Section | min time | avg time | max time |%varavg| %total 1331s --------------------------------------------------------------- 1331s Pair | 0.03895 | 0.039417 | 0.039884 | 0.2 | 19.82 1331s Neigh | 0.014827 | 0.015037 | 0.015248 | 0.2 | 7.56 1331s Comm | 0.059565 | 0.061314 | 0.063063 | 0.7 | 30.83 1331s Output | 0.00036678 | 0.00059622 | 0.00082565 | 0.0 | 0.30 1331s Modify | 0.065943 | 0.066278 | 0.066613 | 0.1 | 33.33 1331s Other | | 0.01622 | | | 8.16 1331s 1331s Nlocal: 210 ave 213 max 207 min 1331s Histogram: 1 0 0 0 0 0 0 0 0 1 1331s Nghost: 50 ave 51 max 49 min 1331s Histogram: 1 0 0 0 0 0 0 0 0 1 1331s Neighs: 558.5 ave 573 max 544 min 1331s Histogram: 1 0 0 0 0 0 0 0 0 1 1331s 1331s Total # of neighbors = 1117 1331s Ave neighs/atom = 2.6595238 1331s Neighbor list builds = 562 1331s Dangerous builds = 0 1331s Total wall time: 0:00:00 1331s LAMMPS (7 Feb 2024 - Update 1) 1332s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1332s using 1 OpenMP thread(s) per MPI task 1332s Lattice spacing in x,y,z = 1.2843567 2.2245711 1.2843567 1332s Created orthogonal box = (0 0 -0.32108918) to (25.687135 22.245711 0.32108918) 1332s 1 by 1 by 1 MPI processor grid 1332s Created 420 atoms 1332s using lattice units in orthogonal box = (0 -0.0022245711 -0.32108918) to (25.687135 22.247936 0.32108918) 1332s create_atoms CPU = 0.000 seconds 1332s 60 atoms in group lower 1332s 60 atoms in group upper 1332s 120 atoms in group boundary 1332s 300 atoms in group flow 1332s Setting atom values ... 1332s 60 settings made for type 1332s Setting atom values ... 1332s 60 settings made for type 1332s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1332s Generated 0 of 3 mixed pair_coeff terms from geometric mixing rule 1332s Neighbor list info ... 1332s update: every = 1 steps, delay = 5 steps, check = yes 1332s max neighbors/atom: 2000, page size: 100000 1332s master list distance cutoff = 1.42246 1332s ghost atom cutoff = 1.42246 1332s binsize = 0.71123, bins = 37 32 1 1332s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1332s (1) pair lj/cut, perpetual 1332s attributes: half, newton on 1332s pair build: half/bin/atomonly/newton 1332s stencil: half/bin/2d 1332s bin: standard 1332s Setting up Verlet run ... 1332s Unit style : lj 1332s Current step : 0 1332s Time step : 0.003 1332s Per MPI rank memory allocation (min/avg/max) = 3.048 | 3.048 | 3.048 Mbytes 1332s Step Temp E_pair E_mol TotEng Press Volume 1332s 0 1 0 0 0.71190476 0.52314537 571.54286 1332s 500 1.0990751 -0.36396768 0 0.41846911 2.522517 575.55806 1332s 1000 1 -0.34609791 0 0.36580685 1.9736175 584.67179 1332s 1500 1.2112861 -0.39062708 0 0.47169327 1.521881 587.24778 1332s 2000 1 -0.39956949 0 0.31233527 1.2496669 583.00676 1332s 2500 1.2236323 -0.40128446 0 0.46982521 1.4276891 570.03729 1332s 3000 1 -0.48849353 0 0.22341123 1.5091361 553.64637 1332s 3500 1.2404547 -0.63017551 0 0.25291012 1.768107 535.22599 1332s 4000 1 -0.71545964 0 -0.0035548789 2.2079822 516.73161 1332s 4500 1.2270239 -0.78740977 0 0.086114399 2.6094706 503.17906 1332s 5000 1 -0.8367971 0 -0.12489233 3.186175 498.73275 1332s 5500 1.2257721 -0.77200456 0 0.10062844 2.6369599 502.75573 1332s 6000 1 -0.6766551 0 0.035249665 2.2092944 512.08396 1332s 6500 1.2201203 -0.67876788 0 0.18984154 1.8784541 517.92079 1332s 7000 1 -0.68555696 0 0.026347797 1.8142356 516.44963 1332s 7500 1.2482526 -0.7345934 0 0.15404357 2.0253109 511.4042 1332s 8000 1 -0.70068231 0 0.011222455 2.1739831 504.55527 1332s 8500 1.2151375 -0.77680457 0 0.088257564 2.6264947 498.00946 1332s 9000 1 -0.74461165 0 -0.032706889 2.574656 498.14523 1332s 9500 1.2047533 -0.75768848 0 0.09998113 2.4174997 501.8877 1332s 10000 1 -0.67361996 0 0.038284798 2.2310948 507.57444 1332s Loop time of 0.225316 on 1 procs for 10000 steps with 420 atoms 1332s 1332s Performance: 11503833.586 tau/day, 44382.074 timesteps/s, 18.640 Matom-step/s 1332s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 1332s 1332s MPI task timing breakdown: 1332s Section | min time | avg time | max time |%varavg| %total 1332s --------------------------------------------------------------- 1332s Pair | 0.074417 | 0.074417 | 0.074417 | 0.0 | 33.03 1332s Neigh | 0.027537 | 0.027537 | 0.027537 | 0.0 | 12.22 1332s Comm | 0.0060865 | 0.0060865 | 0.0060865 | 0.0 | 2.70 1332s Output | 0.00028162 | 0.00028162 | 0.00028162 | 0.0 | 0.12 1332s Modify | 0.10657 | 0.10657 | 0.10657 | 0.0 | 47.30 1332s Other | | 0.01042 | | | 4.63 1332s 1332s Nlocal: 420 ave 420 max 420 min 1332s Histogram: 1 0 0 0 0 0 0 0 0 0 1332s Nghost: 48 ave 48 max 48 min 1332s Histogram: 1 0 0 0 0 0 0 0 0 0 1332s Neighs: 1124 ave 1124 max 1124 min 1332s Histogram: 1 0 0 0 0 0 0 0 0 0 1332s 1332s Total # of neighbors = 1124 1332s Ave neighs/atom = 2.6761905 1332s Neighbor list builds = 561 1332s Dangerous builds = 0 1332s Total wall time: 0:00:00 1332s run: OK 1332s autopkgtest [02:25:42]: test flow: -----------------------] 1332s autopkgtest [02:25:42]: test flow: - - - - - - - - - - results - - - - - - - - - - 1332s flow PASS 1332s autopkgtest [02:25:42]: test friction: preparing testbed 1333s Reading package lists... 1333s Building dependency tree... 1333s Reading state information... 1334s Starting pkgProblemResolver with broken count: 0 1334s Starting 2 pkgProblemResolver with broken count: 0 1334s Done 1334s The following NEW packages will be installed: 1334s autopkgtest-satdep 1334s 0 upgraded, 1 newly installed, 0 to remove and 188 not upgraded. 1334s Need to get 0 B/704 B of archives. 1334s After this operation, 0 B of additional disk space will be used. 1334s Get:1 /tmp/autopkgtest.jeJ5YQ/5-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B] 1335s Selecting previously unselected package autopkgtest-satdep. 1335s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76756 files and directories currently installed.) 1335s Preparing to unpack .../5-autopkgtest-satdep.deb ... 1335s Unpacking autopkgtest-satdep (0) ... 1335s Setting up autopkgtest-satdep (0) ... 1337s (Reading database ... 76756 files and directories currently installed.) 1337s Removing autopkgtest-satdep (0) ... 1337s autopkgtest [02:25:47]: test friction: [----------------------- 1337s LAMMPS (7 Feb 2024 - Update 1) 1337s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1337s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1337s using 1 OpenMP thread(s) per MPI task 1337s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 1337s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 1337s 2 by 1 by 1 MPI processor grid 1337s Created 750 atoms 1337s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1337s create_atoms CPU = 0.001 seconds 1337s Created 750 atoms 1337s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1337s create_atoms CPU = 0.000 seconds 1337s Created 112 atoms 1337s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1337s create_atoms CPU = 0.000 seconds 1337s Created 112 atoms 1337s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1337s create_atoms CPU = 0.000 seconds 1337s 750 atoms in group lo 1337s 862 atoms in group lo 1337s 750 atoms in group hi 1337s 862 atoms in group hi 1337s 150 atoms in group lo-fixed 1337s 150 atoms in group hi-fixed 1337s 300 atoms in group boundary 1337s 1424 atoms in group mobile 1337s Setting atom values ... 1337s 150 settings made for type 1337s Setting atom values ... 1337s 150 settings made for type 1337s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1337s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 1337s Neighbor list info ... 1337s update: every = 1 steps, delay = 5 steps, check = yes 1337s max neighbors/atom: 2000, page size: 100000 1337s master list distance cutoff = 2.8 1337s ghost atom cutoff = 2.8 1337s binsize = 1.4, bins = 41 31 1 1337s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1337s (1) pair lj/cut, perpetual 1337s attributes: half, newton on 1337s pair build: half/bin/atomonly/newton 1337s stencil: half/bin/2d 1337s bin: standard 1337s Setting up Verlet run ... 1337s Unit style : lj 1337s Current step : 0 1337s Time step : 0.0025 1337s Per MPI rank memory allocation (min/avg/max) = 3.05 | 3.05 | 3.05 Mbytes 1337s Step Temp E_pair E_mol TotEng Press Volume 1337s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 1337s 1000 0.081091635 -3.0930924 0 -3.0596257 -0.030127914 2444.9333 1337s 2000 0.082087761 -3.0850474 0 -3.0511696 -0.44306626 2444.9333 1338s 3000 0.088948343 -3.08139 0 -3.0446807 -0.25586469 2444.9333 1338s 4000 0.091186493 -3.0656845 0 -3.0280515 -0.10060397 2444.9333 1338s 5000 0.10802896 -3.0566391 0 -3.0120553 -0.13618814 2444.9333 1338s 6000 0.1 -3.0489246 0 -3.0076543 -0.20314787 2444.9333 1338s 7000 0.11587092 -3.0413277 0 -2.9935074 -0.37543734 2444.9333 1338s 8000 0.1 -3.0296549 0 -2.9883846 -0.41894885 2444.9333 1338s 9000 0.11363101 -3.0247314 0 -2.9778355 -0.43224741 2444.9333 1338s 10000 0.11551834 -3.0287315 0 -2.9810568 -0.37046468 2444.9333 1338s 11000 0.1131303 -3.0177397 0 -2.9710505 -0.48802477 2444.9333 1339s 12000 0.1 -3.0280411 0 -2.9867708 -0.23387667 2444.9333 1339s 13000 0.11507336 -3.0315952 0 -2.984104 -0.40349366 2444.9333 1339s 14000 0.11501583 -3.0318726 0 -2.9844053 -0.31400965 2444.9333 1339s 15000 0.10799871 -3.0337962 0 -2.9892248 -0.32505402 2444.9333 1339s 16000 0.10673344 -3.0405071 0 -2.9964579 -0.24604448 2444.9333 1339s 17000 0.10623843 -3.0391607 0 -2.9953158 -0.44372008 2444.9333 1339s 18000 0.11358768 -3.0422681 0 -2.9953901 -0.30148543 2444.9333 1339s 19000 0.11591119 -3.0468785 0 -2.9990416 -0.33570287 2444.9333 1340s 20000 0.11149703 -3.0428984 0 -2.9968833 -0.34952494 2444.9333 1340s Loop time of 2.40699 on 2 procs for 20000 steps with 1724 atoms 1340s 1340s Performance: 1794769.610 tau/day, 8309.119 timesteps/s, 14.325 Matom-step/s 1340s 99.5% CPU use with 2 MPI tasks x 1 OpenMP threads 1340s 1340s MPI task timing breakdown: 1340s Section | min time | avg time | max time |%varavg| %total 1340s --------------------------------------------------------------- 1340s Pair | 1.4333 | 1.5294 | 1.6254 | 7.8 | 63.54 1340s Neigh | 0.12369 | 0.1349 | 0.14611 | 3.1 | 5.60 1340s Comm | 0.26858 | 0.37883 | 0.48909 | 17.9 | 15.74 1340s Output | 0.0004706 | 0.00096695 | 0.0014633 | 0.0 | 0.04 1340s Modify | 0.26363 | 0.2799 | 0.29618 | 3.1 | 11.63 1340s Other | | 0.083 | | | 3.45 1340s 1340s Nlocal: 862 ave 868 max 856 min 1340s Histogram: 1 0 0 0 0 0 0 0 0 1 1340s Nghost: 160.5 ave 161 max 160 min 1340s Histogram: 1 0 0 0 0 0 0 0 0 1 1340s Neighs: 7178.5 ave 7223 max 7134 min 1340s Histogram: 1 0 0 0 0 0 0 0 0 1 1340s 1340s Total # of neighbors = 14357 1340s Ave neighs/atom = 8.3277262 1340s Neighbor list builds = 716 1340s Dangerous builds = 0 1340s Total wall time: 0:00:02 1340s LAMMPS (7 Feb 2024 - Update 1) 1344s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1344s using 1 OpenMP thread(s) per MPI task 1344s Lattice spacing in x,y,z = 1.1326962 1.9618873 1.1326962 1344s Created orthogonal box = (0 0 -0.28317404) to (56.634808 43.161521 0.28317404) 1344s 1 by 1 by 1 MPI processor grid 1344s Created 750 atoms 1344s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1344s create_atoms CPU = 0.001 seconds 1344s Created 750 atoms 1344s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1344s create_atoms CPU = 0.000 seconds 1344s Created 112 atoms 1344s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1344s create_atoms CPU = 0.000 seconds 1344s Created 112 atoms 1344s using lattice units in orthogonal box = (0 -0.0043161521 -0.28317404) to (56.634808 43.165837 0.28317404) 1344s create_atoms CPU = 0.000 seconds 1344s 750 atoms in group lo 1344s 862 atoms in group lo 1344s 750 atoms in group hi 1344s 862 atoms in group hi 1344s 150 atoms in group lo-fixed 1344s 150 atoms in group hi-fixed 1344s 300 atoms in group boundary 1344s 1424 atoms in group mobile 1344s Setting atom values ... 1344s 150 settings made for type 1344s Setting atom values ... 1344s 150 settings made for type 1344s WARNING: Temperature for thermo pressure is not for group all (src/thermo.cpp:529) 1344s Generated 0 of 6 mixed pair_coeff terms from geometric mixing rule 1344s Neighbor list info ... 1344s update: every = 1 steps, delay = 5 steps, check = yes 1344s max neighbors/atom: 2000, page size: 100000 1344s master list distance cutoff = 2.8 1344s ghost atom cutoff = 2.8 1344s binsize = 1.4, bins = 41 31 1 1344s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1344s (1) pair lj/cut, perpetual 1344s attributes: half, newton on 1344s pair build: half/bin/atomonly/newton 1344s stencil: half/bin/2d 1344s bin: standard 1344s Setting up Verlet run ... 1344s Unit style : lj 1344s Current step : 0 1344s Time step : 0.0025 1344s Per MPI rank memory allocation (min/avg/max) = 3.059 | 3.059 | 3.059 Mbytes 1344s Step Temp E_pair E_mol TotEng Press Volume 1344s 0 0.1 -3.1333672 0 -3.0920969 -1.1437663 2444.9333 1344s 1000 0.1 -3.0915072 0 -3.0502369 0.0099866805 2444.9333 1344s 2000 0.1 -3.0826007 0 -3.0413304 -0.41998885 2444.9333 1344s 3000 0.08982505 -3.0757908 0 -3.0387197 -0.25244271 2444.9333 1344s 4000 0.098727892 -3.0666371 0 -3.0258918 -0.25382683 2444.9333 1344s 5000 0.11345478 -3.0506905 0 -3.0038674 -0.029177812 2444.9333 1344s 6000 0.11386723 -3.0515296 0 -3.0045363 -0.32135016 2444.9333 1344s 7000 0.11555642 -3.0379879 0 -2.9902974 -0.40431666 2444.9333 1344s 8000 0.10658282 -3.0364048 0 -2.9924178 -0.45722834 2444.9333 1344s 9000 0.11650947 -3.0271611 0 -2.9790773 -0.4588819 2444.9333 1344s 10000 0.10575546 -3.0298463 0 -2.9862007 -0.35241095 2444.9333 1344s 11000 0.10953331 -3.0352955 0 -2.9900908 -0.4622173 2444.9333 1344s 12000 0.11720787 -3.0378371 0 -2.989465 -0.27733023 2444.9333 1344s 13000 0.11492573 -3.037974 0 -2.9905438 -0.43259084 2444.9333 1344s 14000 0.11125454 -3.0413758 0 -2.9954607 -0.31244429 2444.9333 1344s 15000 0.10882772 -3.0406062 0 -2.9956927 -0.30403665 2444.9333 1344s 16000 0.1152685 -3.0433936 0 -2.9958219 -0.26659294 2444.9333 1344s 17000 0.10840025 -3.0414208 0 -2.9966837 -0.36183887 2444.9333 1344s 18000 0.11159326 -3.0416392 0 -2.9955843 -0.22725121 2444.9333 1344s 19000 0.11530974 -3.0457005 0 -2.9981118 -0.36488457 2444.9333 1344s 20000 0.1131733 -3.0417814 0 -2.9950744 -0.27902539 2444.9333 1344s Loop time of 3.79003 on 1 procs for 20000 steps with 1724 atoms 1344s 1344s Performance: 1139831.210 tau/day, 5276.996 timesteps/s, 9.098 Matom-step/s 1344s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 1344s 1344s MPI task timing breakdown: 1344s Section | min time | avg time | max time |%varavg| %total 1344s --------------------------------------------------------------- 1344s Pair | 2.9225 | 2.9225 | 2.9225 | 0.0 | 77.11 1344s Neigh | 0.22331 | 0.22331 | 0.22331 | 0.0 | 5.89 1344s Comm | 0.037023 | 0.037023 | 0.037023 | 0.0 | 0.98 1344s Output | 0.00062029 | 0.00062029 | 0.00062029 | 0.0 | 0.02 1344s Modify | 0.52417 | 0.52417 | 0.52417 | 0.0 | 13.83 1344s Other | | 0.08245 | | | 2.18 1344s 1344s Nlocal: 1724 ave 1724 max 1724 min 1344s Histogram: 1 0 0 0 0 0 0 0 0 0 1344s Nghost: 144 ave 144 max 144 min 1344s Histogram: 1 0 0 0 0 0 0 0 0 0 1344s Neighs: 14364 ave 14364 max 14364 min 1344s Histogram: 1 0 0 0 0 0 0 0 0 0 1344s 1344s Total # of neighbors = 14364 1344s Ave neighs/atom = 8.3317865 1344s Neighbor list builds = 714 1344s Dangerous builds = 0 1344s Total wall time: 0:00:03 1344s run: OK 1344s autopkgtest [02:25:54]: test friction: -----------------------] 1344s autopkgtest [02:25:54]: test friction: - - - - - - - - - - results - - - - - - - - - - 1344s friction PASS 1345s autopkgtest [02:25:55]: test hugo: preparing testbed 1346s Reading package lists... 1346s Building dependency tree... 1346s Reading state information... 1346s Starting pkgProblemResolver with broken count: 0 1347s Starting 2 pkgProblemResolver with broken count: 0 1347s Done 1347s The following NEW packages will be installed: 1347s autopkgtest-satdep 1347s 0 upgraded, 1 newly installed, 0 to remove and 188 not upgraded. 1347s Need to get 0 B/708 B of archives. 1347s After this operation, 0 B of additional disk space will be used. 1347s Get:1 /tmp/autopkgtest.jeJ5YQ/6-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [708 B] 1347s Selecting previously unselected package autopkgtest-satdep. 1347s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 76756 files and directories currently installed.) 1347s Preparing to unpack .../6-autopkgtest-satdep.deb ... 1347s Unpacking autopkgtest-satdep (0) ... 1347s Setting up autopkgtest-satdep (0) ... 1349s (Reading database ... 76756 files and directories currently installed.) 1349s Removing autopkgtest-satdep (0) ... 1350s autopkgtest [02:26:00]: test hugo: [----------------------- 1350s LAMMPS (7 Feb 2024 - Update 1) 1350s WARNING: Using I/O redirection is unreliable with parallel runs. Better to use the -in switch to read input files. (src/lammps.cpp:552) 1350s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1350s using 1 OpenMP thread(s) per MPI task 1350s Lattice spacing in x,y,z = 1.4142135 2 2 1350s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1350s 1 by 1 by 2 MPI processor grid 1350s Created 1000 atoms 1350s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1350s create_atoms CPU = 0.000 seconds 1350s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1350s Neighbor list info ... 1350s update: every = 1 steps, delay = 0 steps, check = yes 1350s max neighbors/atom: 2000, page size: 100000 1350s master list distance cutoff = 1.8475372 1350s ghost atom cutoff = 1.8475372 1350s binsize = 0.92376862, bins = 8 11 11 1350s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1350s (1) pair lj/cubic, perpetual 1350s attributes: half, newton on 1350s pair build: half/bin/atomonly/newton 1350s stencil: half/bin/3d 1350s bin: standard 1350s Setting up cg style minimization ... 1350s Unit style : lj 1350s Current step : 0 1350s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 1350s (src/min.cpp:219) 1350s Per MPI rank memory allocation (min/avg/max) = 4.237 | 4.237 | 4.237 Mbytes 1350s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 1350s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 1350s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 1350s 134 0 -6.3344253 -6.3344253 -4.3497387e-13 -4.7220431e-13 -4.7089748e-13 6.9780267 9.8684199 9.8684199 1350s Loop time of 0.0324127 on 2 procs for 134 steps with 1000 atoms 1350s 1350s 95.0% CPU use with 2 MPI tasks x 1 OpenMP threads 1350s 1350s Minimization stats: 1350s Stopping criterion = force tolerance 1350s Energy initial, next-to-last, final = 1350s -6.29375358358574 -6.33442531515467 -6.33442531515467 1350s Force two-norm initial, final = 3395.2895 5.5900884e-10 1350s Force max component initial, final = 1960.2713 3.2516979e-10 1350s Final line search alpha, max atom move = 1 3.2516979e-10 1350s Iterations, force evaluations = 134 137 1350s 1350s MPI task timing breakdown: 1350s Section | min time | avg time | max time |%varavg| %total 1350s --------------------------------------------------------------- 1350s Pair | 0.018838 | 0.01987 | 0.020902 | 0.7 | 61.30 1350s Neigh | 0.00042114 | 0.00047282 | 0.00052449 | 0.0 | 1.46 1350s Comm | 0.0050201 | 0.0060059 | 0.0069918 | 1.3 | 18.53 1350s Output | 1.7931e-05 | 3.6986e-05 | 5.604e-05 | 0.0 | 0.11 1350s Modify | 0 | 0 | 0 | 0.0 | 0.00 1350s Other | | 0.006027 | | | 18.59 1350s 1350s Nlocal: 500 ave 550 max 450 min 1350s Histogram: 1 0 0 0 0 0 0 0 0 1 1350s Nghost: 1214 ave 1264 max 1164 min 1350s Histogram: 1 0 0 0 0 0 0 0 0 1 1350s Neighs: 10500 ave 11550 max 9450 min 1350s Histogram: 1 0 0 0 0 0 0 0 0 1 1350s 1350s Total # of neighbors = 21000 1350s Ave neighs/atom = 21 1350s Neighbor list builds = 1 1350s Dangerous builds = 0 1350s System init for write_restart ... 1350s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1350s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1350s using 1 OpenMP thread(s) per MPI task 1350s Reading restart file ... 1350s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1350s restoring atom style atomic from restart 1350s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1350s 1 by 1 by 2 MPI processor grid 1350s restoring pair style lj/cubic from restart 1350s 1000 atoms 1350s read_restart CPU = 0.001 seconds 1350s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1350s Neighbor list info ... 1350s update: every = 1 steps, delay = 0 steps, check = yes 1350s max neighbors/atom: 2000, page size: 100000 1350s master list distance cutoff = 1.7475372 1350s ghost atom cutoff = 1.7475372 1350s binsize = 0.87376862, bins = 8 12 12 1350s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1350s (1) pair lj/cubic, perpetual 1350s attributes: half, newton on 1350s pair build: half/bin/atomonly/newton 1350s stencil: half/bin/3d 1350s bin: standard 1350s Setting up Verlet run ... 1350s Unit style : lj 1350s Current step : 0 1350s Time step : 0.001 1350s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1350s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1350s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 1350s 1000 0.010142951 0.015199212 -2.1715786 -4183.8734 129.07448 58.487036 8.3141728 -4.1817171 0.93612119 23.511325 3.7371582 1351s 2000 0.37217696 0.55770718 -5.501671 -1113.5078 12.361734 0.56717221 9.4220234 -1.1085639 -0.39798945 13.397419 0.62811105 1351s 3000 0.52025677 0.77960476 -3.8549126 -3288.4446 57.946721 16.7702 8.5666574 -3.2853693 -0.20934692 17.195254 2.2940268 1351s 4000 0.52000674 0.77923009 -4.0042813 -3180.1686 42.281055 5.2538452 8.5173574 -3.1769436 -0.37279124 14.42108 1.9958424 1351s 5000 0.26632329 0.39908545 -5.1559109 -1725.4657 25.17764 3.3288258 8.8480337 -1.7207089 -0.22616494 12.779441 1.3411624 1352s 6000 0.14673418 0.21988117 -3.7657368 -1845.8673 60.573444 14.615699 8.242708 -1.8423215 0.21289355 15.752155 2.6177037 1352s 7000 0.085950705 0.12879713 -5.1644144 -1924.7174 30.48448 5.8732723 8.6787408 -1.9196818 -0.010600412 13.03827 1.5916113 1352s 8000 0.040267888 0.060341431 -4.7547111 -1486.1603 41.506923 9.5593428 8.4878924 -1.4814659 0.11935469 14.137029 1.9986677 1353s 9000 0.025458786 0.038149991 -4.5523455 -1642.5001 44.838555 9.9866475 8.4152155 -1.6379859 0.15016793 14.325688 2.1306608 1353s 10000 0.013645992 0.020448519 -5.2852664 -2425.1699 28.141793 5.1524388 8.6994187 -2.419905 0.02671273 12.635999 1.516074 1353s Loop time of 2.95131 on 2 procs for 10000 steps with 1000 atoms 1353s 1353s Performance: 292751.033 tau/day, 3388.322 timesteps/s, 3.388 Matom-step/s 1353s 95.9% CPU use with 2 MPI tasks x 1 OpenMP threads 1353s 1353s MPI task timing breakdown: 1353s Section | min time | avg time | max time |%varavg| %total 1353s --------------------------------------------------------------- 1353s Pair | 1.9679 | 2.0424 | 2.117 | 5.2 | 69.20 1353s Neigh | 0.095891 | 0.098816 | 0.10174 | 0.9 | 3.35 1353s Comm | 0.34041 | 0.4186 | 0.49678 | 12.1 | 14.18 1353s Output | 0.00045048 | 0.00090125 | 0.001352 | 0.0 | 0.03 1353s Modify | 0.34553 | 0.34835 | 0.35118 | 0.5 | 11.80 1353s Other | | 0.0422 | | | 1.43 1353s 1353s Nlocal: 500 ave 510 max 490 min 1353s Histogram: 1 0 0 0 0 0 0 0 0 1 1353s Nghost: 1351.5 ave 1357 max 1346 min 1353s Histogram: 1 0 0 0 0 0 0 0 0 1 1353s Neighs: 10160.5 ave 10780 max 9541 min 1353s Histogram: 1 0 0 0 0 0 0 0 0 1 1353s 1353s Total # of neighbors = 20321 1353s Ave neighs/atom = 20.321 1353s Neighbor list builds = 194 1353s Dangerous builds = 0 1353s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1353s using 1 OpenMP thread(s) per MPI task 1353s Reading restart file ... 1353s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1353s restoring atom style atomic from restart 1353s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1353s 1 by 1 by 2 MPI processor grid 1353s restoring pair style lj/cubic from restart 1353s 1000 atoms 1353s read_restart CPU = 0.001 seconds 1353s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1353s Neighbor list info ... 1353s update: every = 1 steps, delay = 0 steps, check = yes 1353s max neighbors/atom: 2000, page size: 100000 1353s master list distance cutoff = 1.7475372 1353s ghost atom cutoff = 1.7475372 1353s binsize = 0.87376862, bins = 8 12 12 1353s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1353s (1) pair lj/cubic, perpetual 1353s attributes: half, newton on 1353s pair build: half/bin/atomonly/newton 1353s stencil: half/bin/3d 1353s bin: standard 1353s Setting up Verlet run ... 1353s Unit style : lj 1353s Current step : 0 1353s Time step : 0.001 1353s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1353s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1353s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 1353s 1000 0.0062486434 0.0093635921 -5.9891167 -1670.9585 18.915821 7.5825014 9.233799 -1.6649788 0.023420172 13.975961 0.92134379 1353s 2000 0.0067916638 0.010177308 -5.4565133 -2537.9542 37.064222 15.536207 8.949588 -2.5325079 0.10233218 16.324942 1.5455443 1354s 3000 0.0073287622 0.01098215 -5.3664364 -2643.9475 39.90842 16.808813 8.915463 -2.638592 0.11823484 16.639094 1.6327251 1354s 4000 0.0070205928 0.010520358 -5.3625886 -2655.7942 40.007504 16.850221 8.9144166 -2.6504422 0.11869019 16.650758 1.6356322 1354s 5000 0.007504613 0.011245663 -5.3630526 -2664.53 39.995767 16.844528 8.9145098 -2.6591782 0.11842922 16.649115 1.6353137 1354s 6000 0.0076250338 0.011426113 -5.3627977 -2673.3599 39.995632 16.842795 8.9145438 -2.6680085 0.11826685 16.649378 1.6352823 1355s 7000 0.0075689977 0.011342143 -5.3621825 -2682.2145 40.003065 16.845001 8.9145477 -2.6768636 0.11817069 16.650959 1.6354309 1355s 8000 0.0078519894 0.011766206 -5.3620929 -2691.0711 39.995512 16.838121 8.9145618 -2.6857208 0.11790857 16.649508 1.6352647 1355s 9000 0.0084026053 0.012591304 -5.3624375 -2700.1249 40.00216 16.845103 8.9145931 -2.694775 0.11780799 16.65116 1.6353742 1355s 10000 0.0087571135 0.013122535 -5.3624901 -2708.9831 39.996386 16.840912 8.9146292 -2.7036337 0.11756735 16.650267 1.6352259 1355s Loop time of 2.48371 on 2 procs for 10000 steps with 1000 atoms 1355s 1355s Performance: 347866.510 tau/day, 4026.233 timesteps/s, 4.026 Matom-step/s 1355s 95.4% CPU use with 2 MPI tasks x 1 OpenMP threads 1355s 1355s MPI task timing breakdown: 1355s Section | min time | avg time | max time |%varavg| %total 1355s --------------------------------------------------------------- 1355s Pair | 1.7591 | 1.7761 | 1.7932 | 1.3 | 71.51 1355s Neigh | 0.0049877 | 0.0050233 | 0.0050588 | 0.1 | 0.20 1355s Comm | 0.30742 | 0.3241 | 0.34078 | 2.9 | 13.05 1355s Output | 0.00042589 | 0.0010866 | 0.0017474 | 2.0 | 0.04 1355s Modify | 0.33993 | 0.34129 | 0.34266 | 0.2 | 13.74 1355s Other | | 0.03608 | | | 1.45 1355s 1355s Nlocal: 500 ave 503 max 497 min 1355s Histogram: 1 0 0 0 0 0 0 0 0 1 1355s Nghost: 1214 ave 1217 max 1211 min 1355s Histogram: 1 0 0 0 0 0 0 0 0 1 1355s Neighs: 10500 ave 10560 max 10440 min 1355s Histogram: 1 0 0 0 0 0 0 0 0 1 1355s 1355s Total # of neighbors = 21000 1355s Ave neighs/atom = 21 1355s Neighbor list builds = 10 1355s Dangerous builds = 0 1355s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1355s using 1 OpenMP thread(s) per MPI task 1355s Reading restart file ... 1355s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1355s restoring atom style atomic from restart 1355s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1355s 1 by 1 by 2 MPI processor grid 1355s restoring pair style lj/cubic from restart 1355s 1000 atoms 1355s read_restart CPU = 0.001 seconds 1355s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1355s Neighbor list info ... 1355s update: every = 1 steps, delay = 0 steps, check = yes 1355s max neighbors/atom: 2000, page size: 100000 1355s master list distance cutoff = 1.7475372 1355s ghost atom cutoff = 1.7475372 1355s binsize = 0.87376862, bins = 8 12 12 1355s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1355s (1) pair lj/cubic, perpetual 1355s attributes: half, newton on 1355s pair build: half/bin/atomonly/newton 1355s stencil: half/bin/3d 1355s bin: standard 1355s Setting up Verlet run ... 1355s Unit style : lj 1355s Current step : 0 1355s Time step : 0.001 1355s Per MPI rank memory allocation (min/avg/max) = 3.112 | 3.112 | 3.112 Mbytes 1355s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1355s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014355674 -0.00025875943 9.8684199 0 -0.004855272 2.3793218 0.0041072261 1356s 1000 0.0081680995 0.012239897 -5.502183 -838.86998 35.611847 14.887133 8.9677725 -0.83338004 0.093826643 16.159657 1.5001702 1356s 2000 0.019411571 0.02908824 -5.2936173 -1019.8648 41.786268 17.574468 8.8958707 -1.0146003 0.11822851 16.856679 1.6874844 1356s 3000 0.047493358 0.071168797 -5.3442104 -973.41424 39.063178 16.131155 8.932271 -0.9681412 0.073773934 16.606449 1.6012863 1356s 4000 0.11967749 0.17933672 -5.2091216 -1305.4423 40.847348 16.439268 8.9207902 -1.3004125 0.017533293 16.880106 1.647278 1357s 5000 0.1321076 0.19796323 -5.2602273 -1221.8186 39.035827 15.56534 8.9413169 -1.2167564 -0.00091184948 16.679969 1.5931121 1357s 6000 0.14696328 0.22022448 -5.1837201 -1395.6748 40.850308 16.268271 8.9221523 -1.3907113 -0.0051917075 16.892648 1.6461742 1357s 7000 0.12077248 0.18097755 -5.2583118 -1181.0031 39.190631 15.648852 8.9380865 -1.1759258 0.0072501862 16.684492 1.5989963 1357s 8000 0.14329465 0.21472703 -5.1714516 -1352.4587 40.863939 16.196848 8.9218327 -1.347502 -0.0071500832 16.892664 1.646722 1358s 9000 0.12213842 0.18302442 -5.259117 -1191.6806 39.213345 15.658699 8.9368295 -1.1866045 0.0076494093 16.678266 1.6005204 1358s 10000 0.1480674 0.221879 -5.1796888 -1362.5622 40.676046 16.107317 8.9229551 -1.3576044 -0.0093926147 16.863607 1.6419747 1358s Loop time of 2.61435 on 2 procs for 10000 steps with 1000 atoms 1358s 1358s Performance: 330483.360 tau/day, 3825.039 timesteps/s, 3.825 Matom-step/s 1358s 96.0% CPU use with 2 MPI tasks x 1 OpenMP threads 1358s 1358s MPI task timing breakdown: 1358s Section | min time | avg time | max time |%varavg| %total 1358s --------------------------------------------------------------- 1358s Pair | 1.8393 | 1.8533 | 1.8673 | 1.0 | 70.89 1358s Neigh | 0.046083 | 0.046939 | 0.047795 | 0.4 | 1.80 1358s Comm | 0.31676 | 0.33143 | 0.3461 | 2.5 | 12.68 1358s Output | 0.00042052 | 0.0013204 | 0.0022203 | 2.5 | 0.05 1358s Modify | 0.34437 | 0.34438 | 0.34438 | 0.0 | 13.17 1358s Other | | 0.03695 | | | 1.41 1358s 1358s Nlocal: 500 ave 503 max 497 min 1358s Histogram: 1 0 0 0 0 0 0 0 0 1 1358s Nghost: 1217.5 ave 1219 max 1216 min 1358s Histogram: 1 0 0 0 0 0 0 0 0 1 1358s Neighs: 10291 ave 10353 max 10229 min 1358s Histogram: 1 0 0 0 0 0 0 0 0 1 1358s 1358s Total # of neighbors = 20582 1358s Ave neighs/atom = 20.582 1358s Neighbor list builds = 89 1358s Dangerous builds = 0 1358s Total wall time: 0:00:08 1358s LAMMPS (7 Feb 2024 - Update 1) 1358s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1358s using 1 OpenMP thread(s) per MPI task 1358s Lattice spacing in x,y,z = 1.4142135 2 2 1358s Created orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1358s 1 by 1 by 1 MPI processor grid 1358s Created 1000 atoms 1358s using lattice units in orthogonal box = (0 0 0) to (7.0710677 9.9999999 9.9999999) 1358s create_atoms CPU = 0.001 seconds 1358s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1358s Neighbor list info ... 1358s update: every = 1 steps, delay = 0 steps, check = yes 1358s max neighbors/atom: 2000, page size: 100000 1358s master list distance cutoff = 1.8475372 1358s ghost atom cutoff = 1.8475372 1358s binsize = 0.92376862, bins = 8 11 11 1358s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1358s (1) pair lj/cubic, perpetual 1358s attributes: half, newton on 1358s pair build: half/bin/atomonly/newton 1358s stencil: half/bin/3d 1358s bin: standard 1358s Setting up cg style minimization ... 1358s Unit style : lj 1358s Current step : 0 1358s WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies 1358s (src/min.cpp:219) 1358s Per MPI rank memory allocation (min/avg/max) = 4.247 | 4.247 | 4.247 Mbytes 1358s Step Temp PotEng TotEng Pxx Pyy Pzz Lx Ly Lz 1358s 0 0 -6.2937536 -6.2937536 -2.7722424 -2.7722424 -2.7722424 7.0710677 9.9999999 9.9999999 1358s 100 0 -6.3319014 -6.3319014 -0.75971257 -0.75971257 -0.75971257 7.0003571 9.8999999 9.8999999 1358s 134 0 -6.3344253 -6.3344253 -4.3330648e-13 -4.7530261e-13 -4.7130069e-13 6.9780267 9.8684199 9.8684199 1358s Loop time of 0.051092 on 1 procs for 134 steps with 1000 atoms 1358s 1358s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 1358s 1358s Minimization stats: 1358s Stopping criterion = force tolerance 1358s Energy initial, next-to-last, final = 1358s -6.29375358358557 -6.33442531515503 -6.33442531515503 1358s Force two-norm initial, final = 3395.2895 5.5740327e-10 1358s Force max component initial, final = 1960.2713 3.2730334e-10 1358s Final line search alpha, max atom move = 1 3.2730334e-10 1358s Iterations, force evaluations = 134 137 1358s 1358s MPI task timing breakdown: 1358s Section | min time | avg time | max time |%varavg| %total 1358s --------------------------------------------------------------- 1358s Pair | 0.04089 | 0.04089 | 0.04089 | 0.0 | 80.03 1358s Neigh | 0.00095083 | 0.00095083 | 0.00095083 | 0.0 | 1.86 1358s Comm | 0.0016216 | 0.0016216 | 0.0016216 | 0.0 | 3.17 1358s Output | 2.203e-05 | 2.203e-05 | 2.203e-05 | 0.0 | 0.04 1358s Modify | 0 | 0 | 0 | 0.0 | 0.00 1358s Other | | 0.007608 | | | 14.89 1358s 1358s Nlocal: 1000 ave 1000 max 1000 min 1358s Histogram: 1 0 0 0 0 0 0 0 0 0 1358s Nghost: 1724 ave 1724 max 1724 min 1358s Histogram: 1 0 0 0 0 0 0 0 0 0 1358s Neighs: 21000 ave 21000 max 21000 min 1358s Histogram: 1 0 0 0 0 0 0 0 0 0 1358s 1358s Total # of neighbors = 21000 1358s Ave neighs/atom = 21 1358s Neighbor list builds = 1 1358s Dangerous builds = 0 1358s System init for write_restart ... 1358s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1358s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1358s using 1 OpenMP thread(s) per MPI task 1358s Reading restart file ... 1358s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1358s restoring atom style atomic from restart 1358s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1358s 1 by 1 by 1 MPI processor grid 1358s restoring pair style lj/cubic from restart 1358s 1000 atoms 1358s read_restart CPU = 0.001 seconds 1358s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1358s Neighbor list info ... 1358s update: every = 1 steps, delay = 0 steps, check = yes 1358s max neighbors/atom: 2000, page size: 100000 1358s master list distance cutoff = 1.7475372 1358s ghost atom cutoff = 1.7475372 1358s binsize = 0.87376862, bins = 8 12 12 1358s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1364s (1) pair lj/cubic, perpetual 1364s attributes: half, newton on 1364s pair build: half/bin/atomonly/newton 1364s stencil: half/bin/3d 1364s bin: standard 1364s Setting up Verlet run ... 1364s Unit style : lj 1364s Current step : 0 1364s Time step : 0.001 1364s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 1364s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1364s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 1364s 1000 0.0093381492 0.013993217 -2.1704431 -4183.8284 129.15284 58.544409 8.3142517 -4.1816719 0.93744212 23.519052 3.7381985 1364s 2000 0.24794859 0.37155095 -5.8915826 -528.38691 8.3849811 1.3744297 9.5938806 -0.52286688 -0.24350394 13.910493 0.41033425 1364s 3000 0.3892042 0.5832225 -3.7686896 -3442.3257 72.742382 28.486576 8.6238082 -3.4391402 0.0038227739 19.697354 2.5139569 1364s 4000 0.67010303 1.0041494 -4.2080956 -2935.8105 35.596234 3.9346859 8.7508489 -2.9326065 -0.58038927 14.529876 1.6677093 1364s 5000 0.41845028 0.62704774 -4.8392822 -1894.6664 30.624319 4.6370699 8.7827304 -1.8904542 -0.31998377 13.670423 1.5249748 1364s 6000 0.22409652 0.33580864 -3.7653422 -2666.4156 50.804071 7.220865 8.25496 -2.6629861 -0.017448126 14.48017 2.3883779 1364s 7000 0.094832866 0.14210705 -4.5432169 -2337.0271 35.853414 3.4750842 8.4475655 -2.332626 -0.052659776 12.95347 1.8841809 1364s 8000 0.043338745 0.06494311 -4.6249403 -1687.4892 39.679004 6.7256868 8.4321684 -1.6829292 0.070571417 13.554654 1.9927395 1364s 9000 0.018233343 0.027322664 -4.425909 -1916.4941 41.680023 5.9079935 8.3470382 -1.9120955 0.090887676 13.502397 2.1013348 1364s 10000 0.0082616415 0.01238007 -4.6221264 -1723.6542 39.842157 6.5678795 8.41093 -1.7190444 0.099616538 13.484322 2.0113699 1364s Loop time of 5.15571 on 1 procs for 10000 steps with 1000 atoms 1364s 1364s Performance: 167581.057 tau/day, 1939.596 timesteps/s, 1.940 Matom-step/s 1364s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 1364s 1364s MPI task timing breakdown: 1364s Section | min time | avg time | max time |%varavg| %total 1364s --------------------------------------------------------------- 1364s Pair | 4.2577 | 4.2577 | 4.2577 | 0.0 | 82.58 1364s Neigh | 0.18754 | 0.18754 | 0.18754 | 0.0 | 3.64 1364s Comm | 0.12838 | 0.12838 | 0.12838 | 0.0 | 2.49 1364s Output | 0.00044442 | 0.00044442 | 0.00044442 | 0.0 | 0.01 1364s Modify | 0.54916 | 0.54916 | 0.54916 | 0.0 | 10.65 1364s Other | | 0.03246 | | | 0.63 1364s 1364s Nlocal: 1000 ave 1000 max 1000 min 1364s Histogram: 1 0 0 0 0 0 0 0 0 0 1364s Nghost: 1886 ave 1886 max 1886 min 1364s Histogram: 1 0 0 0 0 0 0 0 0 0 1364s Neighs: 20874 ave 20874 max 20874 min 1364s Histogram: 1 0 0 0 0 0 0 0 0 0 1364s 1364s Total # of neighbors = 20874 1364s Ave neighs/atom = 20.874 1364s Neighbor list builds = 188 1364s Dangerous builds = 0 1364s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1364s using 1 OpenMP thread(s) per MPI task 1364s Reading restart file ... 1364s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1364s restoring atom style atomic from restart 1364s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1364s 1 by 1 by 1 MPI processor grid 1364s restoring pair style lj/cubic from restart 1364s 1000 atoms 1364s read_restart CPU = 0.000 seconds 1364s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1364s Neighbor list info ... 1368s update: every = 1 steps, delay = 0 steps, check = yes 1368s max neighbors/atom: 2000, page size: 100000 1368s master list distance cutoff = 1.7475372 1368s ghost atom cutoff = 1.7475372 1368s binsize = 0.87376862, bins = 8 12 12 1368s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1368s (1) pair lj/cubic, perpetual 1368s attributes: half, newton on 1368s pair build: half/bin/atomonly/newton 1368s stencil: half/bin/3d 1368s bin: standard 1368s Setting up Verlet run ... 1368s Unit style : lj 1368s Current step : 0 1368s Time step : 0.001 1368s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 1368s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1368s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 1368s 1000 0.0062572988 0.0093765623 -5.989087 -1670.9191 18.918118 7.5844401 9.2338165 -1.6649394 0.023419337 13.976997 0.92138738 1368s 2000 0.0068451081 0.010257394 -5.456581 -2537.81 37.064253 15.537266 8.9496405 -2.5323637 0.10230605 16.325406 1.5455016 1368s 3000 0.0073276099 0.010980423 -5.3663421 -2643.8751 39.907292 16.807489 8.9154852 -2.6385198 0.11818116 16.63905 1.6326832 1368s 4000 0.0069296906 0.010384141 -5.36234 -2655.7228 40.010742 16.851482 8.9144328 -2.6503709 0.11868137 16.651571 1.6356847 1368s 5000 0.0076142461 0.011409948 -5.3631443 -2664.4499 39.997648 16.846756 8.9145416 -2.6590982 0.1184114 16.649779 1.6353254 1368s 6000 0.0077053831 0.011546517 -5.3628538 -2673.2444 39.991598 16.840314 8.9145803 -2.667893 0.11818361 16.648852 1.6351691 1368s 7000 0.0077405663 0.011599239 -5.3623531 -2682.1589 40.000448 16.844009 8.9145774 -2.6768081 0.11809899 16.650669 1.6353525 1368s 8000 0.0080673569 0.012088934 -5.3623755 -2691.0104 39.995327 16.840134 8.9146099 -2.6856601 0.11787103 16.649882 1.6352204 1368s 9000 0.0083223083 0.012470979 -5.3622988 -2699.8929 40.00571 16.847764 8.9146503 -2.6945431 0.11781523 16.652389 1.6353987 1368s 10000 0.0091249116 0.01367368 -5.3630138 -2708.966 39.987197 16.837314 8.9146848 -2.7036167 0.11743014 16.648832 1.6349911 1368s Loop time of 4.51395 on 1 procs for 10000 steps with 1000 atoms 1368s 1368s Performance: 191406.785 tau/day, 2215.356 timesteps/s, 2.215 Matom-step/s 1368s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads 1368s 1368s MPI task timing breakdown: 1368s Section | min time | avg time | max time |%varavg| %total 1368s --------------------------------------------------------------- 1368s Pair | 3.8238 | 3.8238 | 3.8238 | 0.0 | 84.71 1368s Neigh | 0.011188 | 0.011188 | 0.011188 | 0.0 | 0.25 1368s Comm | 0.11251 | 0.11251 | 0.11251 | 0.0 | 2.49 1368s Output | 0.00052132 | 0.00052132 | 0.00052132 | 0.0 | 0.01 1368s Modify | 0.53595 | 0.53595 | 0.53595 | 0.0 | 11.87 1368s Other | | 0.02994 | | | 0.66 1368s 1368s Nlocal: 1000 ave 1000 max 1000 min 1368s Histogram: 1 0 0 0 0 0 0 0 0 0 1368s Nghost: 1724 ave 1724 max 1724 min 1368s Histogram: 1 0 0 0 0 0 0 0 0 0 1368s Neighs: 21000 ave 21000 max 21000 min 1368s Histogram: 1 0 0 0 0 0 0 0 0 0 1368s 1368s Total # of neighbors = 21000 1368s Ave neighs/atom = 21 1368s Neighbor list builds = 11 1368s Dangerous builds = 0 1368s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 1368s using 1 OpenMP thread(s) per MPI task 1368s Reading restart file ... 1368s restart file = 7 Feb 2024, LAMMPS = 7 Feb 2024 1368s restoring atom style atomic from restart 1373s orthogonal box = (0.046520549 0.065789991 0.065789991) to (7.0245472 9.9342099 9.9342099) 1373s 1 by 1 by 1 MPI processor grid 1373s restoring pair style lj/cubic from restart 1373s 1000 atoms 1373s read_restart CPU = 0.001 seconds 1373s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 1373s Neighbor list info ... 1373s update: every = 1 steps, delay = 0 steps, check = yes 1373s max neighbors/atom: 2000, page size: 100000 1373s master list distance cutoff = 1.7475372 1373s ghost atom cutoff = 1.7475372 1373s binsize = 0.87376862, bins = 8 12 12 1373s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 1373s (1) pair lj/cubic, perpetual 1373s attributes: half, newton on 1373s pair build: half/bin/atomonly/newton 1373s stencil: half/bin/3d 1373s bin: standard 1373s Setting up Verlet run ... 1373s Unit style : lj 1373s Current step : 0 1373s Time step : 0.001 1373s Per MPI rank memory allocation (min/avg/max) = 3.124 | 3.124 | 3.124 Mbytes 1373s Step Temp KinEng E_pair Econserve Pzz v_tau Lz f_myhug v_dele v_us v_up 1373s 0 0.01 0.014985 -6.3344253 -6.3194403 0.014381062 -0.00023971829 9.8684199 0 -0.004855267 2.3814248 0.0041108563 1373s 1000 0.0083300318 0.012482553 -5.5023183 -838.99233 35.610078 14.886668 8.9677982 -0.83350249 0.093761717 16.159482 1.500112 1373s 2000 0.020386436 0.030549075 -5.294934 -1021.4347 41.760404 17.563313 8.8960328 -1.0161703 0.1178086 16.852842 1.6868239 1373s 3000 0.049693082 0.074465084 -5.3469418 -982.1922 39.030412 16.123502 8.9325589 -0.97691972 0.073097533 16.601991 1.6003728 1373s 4000 0.11859524 0.17771497 -5.207074 -1299.948 40.941639 16.507821 8.9213137 -1.2949186 0.018189971 16.904165 1.6487306 1373s 5000 0.130146 0.19502378 -5.261025 -1208.3405 39.059595 15.609328 8.9431689 -1.2032745 -0.00023811036 16.701434 1.5920334 1373s 6000 0.13812959 0.20698719 -5.1710048 -1334.1421 40.904888 16.242199 8.9222846 -1.329178 -0.0044756362 16.90509 1.6471606 1373s 7000 0.12107441 0.18143001 -5.2602562 -1170.0585 39.060849 15.577606 8.9397535 -1.1649797 0.005587398 16.671517 1.5949415 1373s 8000 0.14333426 0.21478639 -5.1717109 -1352.635 40.876285 16.205871 8.9218128 -1.3476781 -0.0069373292 16.895041 1.6469877 1373s 9000 0.12159783 0.18221435 -5.2591928 -1186.8604 39.22852 15.6778 8.9376658 -1.1817834 0.0077335044 16.68885 1.6001243 1373s 10000 0.15321647 0.22959488 -5.188176 -1391.2245 40.666599 16.146259 8.9228489 -1.3862659 -0.0091900905 16.860718 1.6418747 1373s Loop time of 4.86103 on 1 procs for 10000 steps with 1000 atoms 1373s 1373s Performance: 177740.041 tau/day, 2057.176 timesteps/s, 2.057 Matom-step/s 1373s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads 1373s 1373s MPI task timing breakdown: 1373s Section | min time | avg time | max time |%varavg| %total 1373s --------------------------------------------------------------- 1373s Pair | 4.0541 | 4.0541 | 4.0541 | 0.0 | 83.40 1373s Neigh | 0.099287 | 0.099287 | 0.099287 | 0.0 | 2.04 1373s Comm | 0.1182 | 0.1182 | 0.1182 | 0.0 | 2.43 1373s Output | 0.00043415 | 0.00043415 | 0.00043415 | 0.0 | 0.01 1373s Modify | 0.55622 | 0.55622 | 0.55622 | 0.0 | 11.44 1373s Other | | 0.03276 | | | 0.67 1373s 1373s Nlocal: 1000 ave 1000 max 1000 min 1373s Histogram: 1 0 0 0 0 0 0 0 0 0 1373s Nghost: 1724 ave 1724 max 1724 min 1373s Histogram: 1 0 0 0 0 0 0 0 0 0 1373s Neighs: 20654 ave 20654 max 20654 min 1373s Histogram: 1 0 0 0 0 0 0 0 0 0 1373s 1373s Total # of neighbors = 20654 1373s Ave neighs/atom = 20.654 1373s Neighbor list builds = 94 1373s Dangerous builds = 0 1373s Total wall time: 0:00:14 1373s run: OK 1373s autopkgtest [02:26:23]: test hugo: -----------------------] 1374s autopkgtest [02:26:24]: test hugo: - - - - - - - - - - results - - - - - - - - - - 1374s hugo PASS 1374s autopkgtest [02:26:24]: test command1: preparing testbed 2498s autopkgtest [02:45:08]: testbed dpkg architecture: amd64 2498s autopkgtest [02:45:08]: testbed apt version: 2.7.14build2 2498s autopkgtest [02:45:08]: @@@@@@@@@@@@@@@@@@@@ test bed setup 2499s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 2499s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6004 B] 2499s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [831 kB] 2499s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [361 kB] 2499s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [10.6 kB] 2499s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [366 kB] 2499s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [271 kB] 2499s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B] 2499s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [24.6 kB] 2499s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [5016 B] 2499s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B] 2499s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [1045 kB] 2499s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [448 kB] 2499s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B] 2499s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [9440 B] 2499s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [2044 B] 2499s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B] 2501s Fetched 3510 kB in 1s (5784 kB/s) 2502s Reading package lists... 2503s Reading package lists... 2503s Building dependency tree... 2503s Reading state information... 2504s Calculating upgrade... 2504s The following packages will be upgraded: 2504s bash curl grub-common grub-pc grub-pc-bin grub2-common libcurl3t64-gnutls 2504s libcurl4t64 libpython3.12-minimal libpython3.12-stdlib libsasl2-2 2504s libsasl2-modules libsasl2-modules-db python3-gi python3.12 2504s python3.12-minimal shim-signed 2504s 17 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2504s Need to get 12.6 MB of archives. 2504s After this operation, 34.8 kB disk space will be freed. 2504s Get:1 http://ftpmaster.internal/ubuntu noble/main amd64 bash amd64 5.2.21-2ubuntu4 [794 kB] 2504s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12 amd64 3.12.2-5ubuntu3 [644 kB] 2504s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12-stdlib amd64 3.12.2-5ubuntu3 [2067 kB] 2504s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 python3.12-minimal amd64 3.12.2-5ubuntu3 [2337 kB] 2504s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12-minimal amd64 3.12.2-5ubuntu3 [833 kB] 2504s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 python3-gi amd64 3.48.2-1 [232 kB] 2504s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 curl amd64 8.5.0-2ubuntu10 [227 kB] 2504s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10 [340 kB] 2504s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 grub-pc amd64 2.12-1ubuntu7 [137 kB] 2504s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 grub2-common amd64 2.12-1ubuntu7 [669 kB] 2504s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 grub-pc-bin amd64 2.12-1ubuntu7 [1097 kB] 2504s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 grub-common amd64 2.12-1ubuntu7 [2120 kB] 2504s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 libcurl3t64-gnutls amd64 8.5.0-2ubuntu10 [333 kB] 2504s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-5ubuntu3 [20.3 kB] 2504s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-5ubuntu3 [53.2 kB] 2504s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-5ubuntu3 [69.7 kB] 2504s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 shim-signed amd64 1.58+15.8-0ubuntu1 [665 kB] 2504s Preconfiguring packages ... 2504s Fetched 12.6 MB in 0s (58.6 MB/s) 2505s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 105900 files and directories currently installed.) 2505s Preparing to unpack .../bash_5.2.21-2ubuntu4_amd64.deb ... 2505s Unpacking bash (5.2.21-2ubuntu4) over (5.2.21-2ubuntu2) ... 2505s Setting up bash (5.2.21-2ubuntu4) ... 2505s update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode 2505s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 105900 files and directories currently installed.) 2505s Preparing to unpack .../00-python3.12_3.12.2-5ubuntu3_amd64.deb ... 2505s Unpacking python3.12 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 2505s Preparing to unpack .../01-libpython3.12-stdlib_3.12.2-5ubuntu3_amd64.deb ... 2505s Unpacking libpython3.12-stdlib:amd64 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 2505s Preparing to unpack .../02-python3.12-minimal_3.12.2-5ubuntu3_amd64.deb ... 2505s Unpacking python3.12-minimal (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 2505s Preparing to unpack .../03-libpython3.12-minimal_3.12.2-5ubuntu3_amd64.deb ... 2505s Unpacking libpython3.12-minimal:amd64 (3.12.2-5ubuntu3) over (3.12.2-4build4) ... 2505s Preparing to unpack .../04-python3-gi_3.48.2-1_amd64.deb ... 2506s Unpacking python3-gi (3.48.2-1) over (3.48.1-1build1) ... 2506s Preparing to unpack .../05-curl_8.5.0-2ubuntu10_amd64.deb ... 2506s Unpacking curl (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 2506s Preparing to unpack .../06-libcurl4t64_8.5.0-2ubuntu10_amd64.deb ... 2506s Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 2506s Preparing to unpack .../07-grub-pc_2.12-1ubuntu7_amd64.deb ... 2506s Unpacking grub-pc (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 2506s Preparing to unpack .../08-grub2-common_2.12-1ubuntu7_amd64.deb ... 2506s Unpacking grub2-common (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 2506s Preparing to unpack .../09-grub-pc-bin_2.12-1ubuntu7_amd64.deb ... 2506s Unpacking grub-pc-bin (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 2506s Preparing to unpack .../10-grub-common_2.12-1ubuntu7_amd64.deb ... 2506s Unpacking grub-common (2.12-1ubuntu7) over (2.12-1ubuntu6) ... 2506s Preparing to unpack .../11-libcurl3t64-gnutls_8.5.0-2ubuntu10_amd64.deb ... 2506s Unpacking libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10) over (8.5.0-2ubuntu9) ... 2506s Preparing to unpack .../12-libsasl2-modules-db_2.1.28+dfsg1-5ubuntu3_amd64.deb ... 2506s Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 2506s Preparing to unpack .../13-libsasl2-2_2.1.28+dfsg1-5ubuntu3_amd64.deb ... 2506s Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 2506s Preparing to unpack .../14-libsasl2-modules_2.1.28+dfsg1-5ubuntu3_amd64.deb ... 2506s Unpacking libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3) over (2.1.28+dfsg1-5ubuntu2) ... 2506s Preparing to unpack .../15-shim-signed_1.58+15.8-0ubuntu1_amd64.deb ... 2506s Unpacking shim-signed (1.58+15.8-0ubuntu1) over (1.57+15.8-0ubuntu1) ... 2506s Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10) ... 2506s Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3) ... 2506s Setting up libpython3.12-minimal:amd64 (3.12.2-5ubuntu3) ... 2506s Setting up libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10) ... 2506s Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-5ubuntu3) ... 2506s Setting up grub-common (2.12-1ubuntu7) ... 2507s update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults 2507s Setting up python3-gi (3.48.2-1) ... 2508s Setting up libsasl2-2:amd64 (2.1.28+dfsg1-5ubuntu3) ... 2508s Setting up curl (8.5.0-2ubuntu10) ... 2508s Setting up python3.12-minimal (3.12.2-5ubuntu3) ... 2508s Setting up libpython3.12-stdlib:amd64 (3.12.2-5ubuntu3) ... 2508s Setting up grub2-common (2.12-1ubuntu7) ... 2508s Setting up python3.12 (3.12.2-5ubuntu3) ... 2509s Setting up grub-pc-bin (2.12-1ubuntu7) ... 2509s Setting up shim-signed (1.58+15.8-0ubuntu1) ... 2509s Installing for x86_64-efi platform. 2510s grub-install: warning: EFI variables cannot be set on this system. 2510s grub-install: warning: You will have to complete the GRUB setup manually. 2510s Installation finished. No error reported. 2510s Setting up grub-pc (2.12-1ubuntu7) ... 2510s Installing for i386-pc platform. 2510s Installation finished. No error reported. 2510s Sourcing file `/etc/default/grub' 2510s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 2510s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 2510s Generating grub configuration file ... 2511s Found linux image: /boot/vmlinuz-6.8.0-22-generic 2511s Found initrd image: /boot/initrd.img-6.8.0-22-generic 2511s Found linux image: /boot/vmlinuz-6.8.0-11-generic 2511s Found initrd image: /boot/initrd.img-6.8.0-11-generic 2511s Warning: os-prober will not be executed to detect other bootable partitions. 2511s Systems on them will not be added to the GRUB boot configuration. 2511s Check GRUB_DISABLE_OS_PROBER documentation entry. 2511s Adding boot menu entry for UEFI Firmware Settings ... 2511s done 2511s Processing triggers for install-info (7.1-3build2) ... 2511s Processing triggers for libc-bin (2.39-0ubuntu8) ... 2511s Processing triggers for systemd (255.4-1ubuntu7) ... 2511s Processing triggers for man-db (2.12.0-4build1) ... 2512s Processing triggers for debianutils (5.17build1) ... 2516s Reading package lists... 2516s Building dependency tree... 2516s Reading state information... 2516s The following packages will be REMOVED: 2516s linux-headers-6.8.0-11* linux-headers-6.8.0-11-generic* 2516s linux-image-6.8.0-11-generic* linux-modules-6.8.0-11-generic* 2516s 0 upgraded, 0 newly installed, 4 to remove and 0 not upgraded. 2516s After this operation, 167 MB disk space will be freed. 2516s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 105901 files and directories currently installed.) 2516s Removing linux-headers-6.8.0-11-generic (6.8.0-11.11) ... 2516s Removing linux-headers-6.8.0-11 (6.8.0-11.11) ... 2516s Removing linux-image-6.8.0-11-generic (6.8.0-11.11) ... 2516s I: /boot/vmlinuz.old is now a symlink to vmlinuz-6.8.0-22-generic 2516s I: /boot/initrd.img.old is now a symlink to initrd.img-6.8.0-22-generic 2516s /etc/kernel/postrm.d/initramfs-tools: 2516s update-initramfs: Deleting /boot/initrd.img-6.8.0-11-generic 2517s /etc/kernel/postrm.d/zz-update-grub: 2517s Sourcing file `/etc/default/grub' 2517s Sourcing file `/etc/default/grub.d/50-cloudimg-settings.cfg' 2517s Sourcing file `/etc/default/grub.d/90-autopkgtest.cfg' 2517s Generating grub configuration file ... 2517s Found linux image: /boot/vmlinuz-6.8.0-22-generic 2517s Found initrd image: /boot/initrd.img-6.8.0-22-generic 2517s Warning: os-prober will not be executed to detect other bootable partitions. 2517s Systems on them will not be added to the GRUB boot configuration. 2517s Check GRUB_DISABLE_OS_PROBER documentation entry. 2517s Adding boot menu entry for UEFI Firmware Settings ... 2517s done 2517s Removing linux-modules-6.8.0-11-generic (6.8.0-11.11) ... 2517s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74382 files and directories currently installed.) 2517s Purging configuration files for linux-image-6.8.0-11-generic (6.8.0-11.11) ... 2517s Purging configuration files for linux-modules-6.8.0-11-generic (6.8.0-11.11) ... 2518s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 2518s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 2518s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 2518s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 2519s Reading package lists... 2519s Reading package lists... 2519s Building dependency tree... 2519s Reading state information... 2520s Calculating upgrade... 2520s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2520s Reading package lists... 2520s Building dependency tree... 2520s Reading state information... 2520s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 2520s autopkgtest [02:45:30]: rebooting testbed after setup commands that affected boot 2559s Reading package lists... 2559s Building dependency tree... 2559s Reading state information... 2560s Starting pkgProblemResolver with broken count: 0 2560s Starting 2 pkgProblemResolver with broken count: 0 2560s Done 2560s The following additional packages will be installed: 2560s autoconf automake autotools-dev cpp-12 gcc-12 gcc-12-base gfortran-12 2560s libaec0 libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 libcairo2 2560s libcc1-0 libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 libdrm-nouveau2 2560s libdrm-radeon1 libevent-2.1-7t64 libevent-dev libevent-extra-2.1-7t64 2560s libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 libfabric1 2560s libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 libgl1 2560s libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 libglx-mesa0 2560s libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 libhsa-runtime64-1 2560s libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev libisl23 2560s libitm1 libjs-jquery libjs-jquery-ui libjsoncpp25 libkim-api2 liblammps-dev 2560s liblammps0 liblapack3 libllvm17t64 liblsan0 libltdl-dev libltdl7 libmpc3 2560s libmunge2 libnetcdf19t64 libnl-3-dev libnl-route-3-dev libnuma-dev libogg0 2560s libopengl0 libopenmpi-dev libopenmpi3 libpciaccess0 libpixman-1-0 2560s libpmix-dev libpmix2 libpnetcdf0d libproj25 libpsm-infinipath1 libpsm2-2 2560s libpython3.12t64 libquadmath0 librdmacm1t64 libsz2 libtbb12 libtbbbind-2-5 2560s libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 libtsan2 libubsan1 libucx0 2560s libvoro++1 libvtk9.1 libvulkan1 libx11-xcb1 libxcb-dri2-0 libxcb-dri3-0 2560s libxcb-glx0 libxcb-present0 libxcb-randr0 libxcb-render0 libxcb-shm0 2560s libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 libxnvctrl0 libxrender1 2560s libxshmfence1 libxss1 libxxf86vm1 m4 mpi-default-bin mpi-default-dev 2560s ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data python3-lammps 2560s x11-common zlib1g-dev 2560s Suggested packages: 2560s autoconf-archive gnu-standards autoconf-doc libtool gettext gcc-12-locales 2560s cpp-12-doc gcc-12-multilib gcc-12-doc gfortran-12-multilib gfortran-12-doc 2560s libcoarrays-dev libfftw3-bin libfftw3-dev glew-utils 2560s libhwloc-contrib-plugins libjs-jquery-ui-docs libtool-doc openmpi-doc 2560s proj-bin tcl8.6 tk8.6 vtk9-doc vtk9-examples m4-doc opencl-icd gfortran 2560s | fortran-compiler 2560s Recommended packages: 2560s libgl1-amber-dri javascript-common lammps-doc libtool 2560s libcoarrays-openmpi-dev mesa-vulkan-drivers | vulkan-icd python3-mpi4py 2561s The following NEW packages will be installed: 2561s autoconf automake autopkgtest-satdep autotools-dev cpp-12 gcc-12 gcc-12-base 2561s gfortran-12 libaec0 libamd-comgr2 libamdhip64-5 libasan8 libatomic1 libblas3 2561s libcairo2 libcc1-0 libdouble-conversion3 libdrm-amdgpu1 libdrm-intel1 2561s libdrm-nouveau2 libdrm-radeon1 libevent-2.1-7t64 libevent-dev 2561s libevent-extra-2.1-7t64 libevent-openssl-2.1-7t64 libevent-pthreads-2.1-7t64 2561s libfabric1 libfftw3-double3 libgcc-12-dev libgfortran-12-dev libgfortran5 2561s libgl1 libgl1-mesa-dri libgl2ps1.4 libglapi-mesa libglew2.2 libglvnd0 2561s libglx-mesa0 libglx0 libgomp1 libhdf5-103-1t64 libhdf5-hl-100t64 2561s libhsa-runtime64-1 libhsakmt1 libhwloc-dev libhwloc-plugins libhwloc15 2561s libibverbs-dev libisl23 libitm1 libjs-jquery libjs-jquery-ui libjsoncpp25 2561s libkim-api2 liblammps-dev liblammps0 liblapack3 libllvm17t64 liblsan0 2561s libltdl-dev libltdl7 libmpc3 libmunge2 libnetcdf19t64 libnl-3-dev 2561s libnl-route-3-dev libnuma-dev libogg0 libopengl0 libopenmpi-dev libopenmpi3 2561s libpciaccess0 libpixman-1-0 libpmix-dev libpmix2 libpnetcdf0d libproj25 2561s libpsm-infinipath1 libpsm2-2 libpython3.12t64 libquadmath0 librdmacm1t64 2561s libsz2 libtbb12 libtbbbind-2-5 libtbbmalloc2 libtcl8.6 libtheora0 libtk8.6 2561s libtsan2 libubsan1 libucx0 libvoro++1 libvtk9.1 libvulkan1 libx11-xcb1 2561s libxcb-dri2-0 libxcb-dri3-0 libxcb-glx0 libxcb-present0 libxcb-randr0 2561s libxcb-render0 libxcb-shm0 libxcb-sync1 libxcb-xfixes0 libxfixes3 libxft2 2561s libxnvctrl0 libxrender1 libxshmfence1 libxss1 libxxf86vm1 m4 mpi-default-bin 2561s mpi-default-dev ocl-icd-libopencl1 openmpi-bin openmpi-common proj-data 2561s python3-lammps x11-common zlib1g-dev 2561s 0 upgraded, 122 newly installed, 0 to remove and 0 not upgraded. 2561s Need to get 181 MB/181 MB of archives. 2561s After this operation, 709 MB of additional disk space will be used. 2561s Get:1 /tmp/autopkgtest.jeJ5YQ/7-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [716 B] 2561s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 m4 amd64 1.4.19-4 [243 kB] 2561s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 autoconf all 2.71-3 [339 kB] 2561s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 autotools-dev all 20220109.1 [44.9 kB] 2561s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 automake all 1:1.16.5-1.3ubuntu1 [558 kB] 2561s Get:6 http://ftpmaster.internal/ubuntu noble/universe amd64 gcc-12-base amd64 12.3.0-17ubuntu1 [46.2 kB] 2561s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 libisl23 amd64 0.26-3 [741 kB] 2561s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libmpc3 amd64 1.3.1-1 [54.1 kB] 2561s Get:9 http://ftpmaster.internal/ubuntu noble/universe amd64 cpp-12 amd64 12.3.0-17ubuntu1 [10.8 MB] 2561s Get:10 http://ftpmaster.internal/ubuntu noble/main amd64 libcc1-0 amd64 14-20240330-1ubuntu2 [47.7 kB] 2561s Get:11 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240330-1ubuntu2 [147 kB] 2561s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 libitm1 amd64 14-20240330-1ubuntu2 [29.1 kB] 2561s Get:13 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240330-1ubuntu2 [10.4 kB] 2561s Get:14 http://ftpmaster.internal/ubuntu noble/main amd64 libasan8 amd64 14-20240330-1ubuntu2 [3020 kB] 2561s Get:15 http://ftpmaster.internal/ubuntu noble/main amd64 liblsan0 amd64 14-20240330-1ubuntu2 [1310 kB] 2561s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libtsan2 amd64 14-20240330-1ubuntu2 [2731 kB] 2561s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libubsan1 amd64 14-20240330-1ubuntu2 [1172 kB] 2561s Get:18 http://ftpmaster.internal/ubuntu noble/main amd64 libquadmath0 amd64 14-20240330-1ubuntu2 [155 kB] 2561s Get:19 http://ftpmaster.internal/ubuntu noble/universe amd64 libgcc-12-dev amd64 12.3.0-17ubuntu1 [2577 kB] 2561s Get:20 http://ftpmaster.internal/ubuntu noble/universe amd64 gcc-12 amd64 12.3.0-17ubuntu1 [21.6 MB] 2561s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240330-1ubuntu2 [930 kB] 2561s Get:22 http://ftpmaster.internal/ubuntu noble/universe amd64 libgfortran-12-dev amd64 12.3.0-17ubuntu1 [926 kB] 2561s Get:23 http://ftpmaster.internal/ubuntu noble/universe amd64 gfortran-12 amd64 12.3.0-17ubuntu1 [11.2 MB] 2562s Get:24 http://ftpmaster.internal/ubuntu noble/universe amd64 libaec0 amd64 1.1.2-1 [22.6 kB] 2562s Get:25 http://ftpmaster.internal/ubuntu noble/main amd64 libllvm17t64 amd64 1:17.0.6-9build3 [26.2 MB] 2562s Get:26 http://ftpmaster.internal/ubuntu noble/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3build2 [14.4 MB] 2562s Get:27 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [20.4 kB] 2562s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 libhsakmt1 amd64 5.7.0-1build1 [62.9 kB] 2562s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 libhsa-runtime64-1 amd64 5.7.1-2build1 [491 kB] 2562s Get:30 http://ftpmaster.internal/ubuntu noble/universe amd64 libamdhip64-5 amd64 5.2.3-12 [5204 kB] 2562s Get:31 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB] 2562s Get:32 http://ftpmaster.internal/ubuntu noble/main amd64 libpixman-1-0 amd64 0.42.2-1 [268 kB] 2562s Get:33 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-render0 amd64 1.15-1 [16.3 kB] 2562s Get:34 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-shm0 amd64 1.15-1 [5740 B] 2562s Get:35 http://ftpmaster.internal/ubuntu noble/main amd64 libxrender1 amd64 1:0.9.10-1.1 [20.0 kB] 2562s Get:36 http://ftpmaster.internal/ubuntu noble/main amd64 libcairo2 amd64 1.18.0-3 [566 kB] 2562s Get:37 http://ftpmaster.internal/ubuntu noble/universe amd64 libdouble-conversion3 amd64 3.3.0-1 [39.9 kB] 2562s Get:38 http://ftpmaster.internal/ubuntu noble/main amd64 libpciaccess0 amd64 0.17-3 [18.9 kB] 2562s Get:39 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-intel1 amd64 2.4.120-2 [63.8 kB] 2562s Get:40 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [17.6 kB] 2562s Get:41 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-radeon1 amd64 2.4.120-2 [20.7 kB] 2562s Get:42 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-9ubuntu2 [145 kB] 2562s Get:43 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-extra-2.1-7t64 amd64 2.1.12-stable-9ubuntu2 [64.2 kB] 2562s Get:44 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-pthreads-2.1-7t64 amd64 2.1.12-stable-9ubuntu2 [7982 B] 2562s Get:45 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-openssl-2.1-7t64 amd64 2.1.12-stable-9ubuntu2 [15.7 kB] 2562s Get:46 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-dev amd64 2.1.12-stable-9ubuntu2 [274 kB] 2562s Get:47 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [178 kB] 2562s Get:48 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm2-2 amd64 11.2.185-2 [196 kB] 2562s Get:49 http://ftpmaster.internal/ubuntu noble/main amd64 librdmacm1t64 amd64 50.0-2build2 [70.7 kB] 2562s Get:50 http://ftpmaster.internal/ubuntu noble/universe amd64 libfabric1 amd64 1.17.0-3build2 [657 kB] 2562s Get:51 http://ftpmaster.internal/ubuntu noble/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu3 [838 kB] 2562s Get:52 http://ftpmaster.internal/ubuntu noble/main amd64 libvulkan1 amd64 1.3.275.0-1 [142 kB] 2562s Get:53 http://ftpmaster.internal/ubuntu noble/main amd64 libglapi-mesa amd64 24.0.3-1ubuntu4 [40.8 kB] 2562s Get:54 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-dri3-0 amd64 1.15-1 [7174 B] 2562s Get:55 http://ftpmaster.internal/ubuntu noble/main amd64 libgl1-mesa-dri amd64 24.0.3-1ubuntu4 [8942 kB] 2562s Get:56 http://ftpmaster.internal/ubuntu noble/main amd64 libglvnd0 amd64 1.7.0-1 [69.5 kB] 2562s Get:57 http://ftpmaster.internal/ubuntu noble/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [7798 B] 2562s Get:58 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-dri2-0 amd64 1.15-1 [7276 B] 2562s Get:59 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-glx0 amd64 1.15-1 [24.6 kB] 2562s Get:60 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-present0 amd64 1.15-1 [5708 B] 2562s Get:61 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-randr0 amd64 1.15-1 [18.1 kB] 2562s Get:62 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-sync1 amd64 1.15-1 [9358 B] 2562s Get:63 http://ftpmaster.internal/ubuntu noble/main amd64 libxcb-xfixes0 amd64 1.15-1 [10.2 kB] 2562s Get:64 http://ftpmaster.internal/ubuntu noble/main amd64 libxfixes3 amd64 1:6.0.0-2 [10.9 kB] 2562s Get:65 http://ftpmaster.internal/ubuntu noble/main amd64 libxshmfence1 amd64 1.3-1build4 [5394 B] 2562s Get:66 http://ftpmaster.internal/ubuntu noble/main amd64 libxxf86vm1 amd64 1:1.1.4-1build3 [10.4 kB] 2562s Get:67 http://ftpmaster.internal/ubuntu noble/main amd64 libglx-mesa0 amd64 24.0.3-1ubuntu4 [154 kB] 2562s Get:68 http://ftpmaster.internal/ubuntu noble/main amd64 libglx0 amd64 1.7.0-1 [38.7 kB] 2562s Get:69 http://ftpmaster.internal/ubuntu noble/main amd64 libgl1 amd64 1.7.0-1 [103 kB] 2562s Get:70 http://ftpmaster.internal/ubuntu noble/universe amd64 libgl2ps1.4 amd64 1.4.2+dfsg1-2 [43.5 kB] 2562s Get:71 http://ftpmaster.internal/ubuntu noble/universe amd64 libglew2.2 amd64 2.2.0-4 [196 kB] 2562s Get:72 http://ftpmaster.internal/ubuntu noble/universe amd64 libsz2 amd64 1.1.2-1 [5416 B] 2562s Get:73 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-103-1t64 amd64 1.10.10+repack-3.1ubuntu4 [1270 kB] 2562s Get:74 http://ftpmaster.internal/ubuntu noble/universe amd64 libhdf5-hl-100t64 amd64 1.10.10+repack-3.1ubuntu4 [56.0 kB] 2562s Get:75 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc15 amd64 2.10.0-1 [171 kB] 2562s Get:76 http://ftpmaster.internal/ubuntu noble/main amd64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 2562s Get:77 http://ftpmaster.internal/ubuntu noble/universe amd64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 2562s Get:78 http://ftpmaster.internal/ubuntu noble/main amd64 libjsoncpp25 amd64 1.9.5-6 [82.3 kB] 2562s Get:79 http://ftpmaster.internal/ubuntu noble/universe amd64 libkim-api2 amd64 2.3.0-1 [582 kB] 2562s Get:80 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB] 2562s Get:81 http://ftpmaster.internal/ubuntu noble/universe amd64 libnetcdf19t64 amd64 1:4.9.2-5ubuntu4 [473 kB] 2562s Get:82 http://ftpmaster.internal/ubuntu noble/universe amd64 libmunge2 amd64 0.5.15-4build1 [14.7 kB] 2562s Get:83 http://ftpmaster.internal/ubuntu noble/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu4 [12.6 kB] 2562s Get:84 http://ftpmaster.internal/ubuntu noble/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [38.3 kB] 2562s Get:85 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc-plugins amd64 2.10.0-1 [15.8 kB] 2562s Get:86 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libpmix2 amd64 5.0.1-4 [695 kB] 2562s Get:87 http://ftpmaster.internal/ubuntu noble/universe amd64 libucx0 amd64 1.16.0+ds-5 [1140 kB] 2562s Get:88 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libopenmpi3 amd64 4.1.6-5ubuntu1 [3177 kB] 2562s Get:89 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libpnetcdf0d amd64 1.12.3-2 [937 kB] 2562s Get:90 http://ftpmaster.internal/ubuntu noble/main amd64 libpython3.12t64 amd64 3.12.2-5ubuntu3 [2332 kB] 2562s Get:91 http://ftpmaster.internal/ubuntu noble/universe amd64 libvoro++1 amd64 0.5+revert-to-0.4.6+dfsg1-1 [119 kB] 2562s Get:92 http://ftpmaster.internal/ubuntu noble/main amd64 libogg0 amd64 1.3.5-3 [22.4 kB] 2562s Get:93 http://ftpmaster.internal/ubuntu noble/main amd64 libopengl0 amd64 1.7.0-1 [33.0 kB] 2562s Get:94 http://ftpmaster.internal/ubuntu noble/universe amd64 proj-data all 9.4.0-1build2 [7885 kB] 2563s Get:95 http://ftpmaster.internal/ubuntu noble/universe amd64 libproj25 amd64 9.4.0-1build2 [1396 kB] 2563s Get:96 http://ftpmaster.internal/ubuntu noble/universe amd64 libtbbmalloc2 amd64 2021.11.0-2ubuntu2 [60.5 kB] 2563s Get:97 http://ftpmaster.internal/ubuntu noble/universe amd64 libtbbbind-2-5 amd64 2021.11.0-2ubuntu2 [16.4 kB] 2563s Get:98 http://ftpmaster.internal/ubuntu noble/universe amd64 libtbb12 amd64 2021.11.0-2ubuntu2 [106 kB] 2563s Get:99 http://ftpmaster.internal/ubuntu noble/main amd64 libtcl8.6 amd64 8.6.14+dfsg-1build1 [988 kB] 2563s Get:100 http://ftpmaster.internal/ubuntu noble/main amd64 libtheora0 amd64 1.1.1+dfsg.1-16.1build3 [211 kB] 2563s Get:101 http://ftpmaster.internal/ubuntu noble/main amd64 libxft2 amd64 2.3.6-1 [44.5 kB] 2563s Get:102 http://ftpmaster.internal/ubuntu noble/main amd64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 2563s Get:103 http://ftpmaster.internal/ubuntu noble/main amd64 libxss1 amd64 1:1.2.3-1build2 [8476 B] 2563s Get:104 http://ftpmaster.internal/ubuntu noble/main amd64 libtk8.6 amd64 8.6.14-1build1 [779 kB] 2563s Get:105 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libvtk9.1 amd64 9.1.0+really9.1.0+dfsg2-7build1 [20.3 MB] 2563s Get:106 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 liblammps0 amd64 20240207+dfsg-1 [7166 kB] 2563s Get:107 http://ftpmaster.internal/ubuntu noble/universe amd64 openmpi-common all 4.1.6-7ubuntu1 [170 kB] 2563s Get:108 http://ftpmaster.internal/ubuntu noble/main amd64 libnl-3-dev amd64 3.7.0-0.3 [99.5 kB] 2563s Get:109 http://ftpmaster.internal/ubuntu noble/main amd64 libnl-route-3-dev amd64 3.7.0-0.3 [216 kB] 2563s Get:110 http://ftpmaster.internal/ubuntu noble/main amd64 libibverbs-dev amd64 50.0-2build2 [678 kB] 2563s Get:111 http://ftpmaster.internal/ubuntu noble/main amd64 libnuma-dev amd64 2.0.18-1 [37.0 kB] 2563s Get:112 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl7 amd64 2.4.7-7 [40.5 kB] 2563s Get:113 http://ftpmaster.internal/ubuntu noble/main amd64 libltdl-dev amd64 2.4.7-7 [169 kB] 2563s Get:114 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc-dev amd64 2.10.0-1 [267 kB] 2563s Get:115 http://ftpmaster.internal/ubuntu noble/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1ubuntu2 [894 kB] 2563s Get:116 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libpmix-dev amd64 5.0.1-4 [4013 kB] 2563s Get:117 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 openmpi-bin amd64 4.1.6-5ubuntu1 [124 kB] 2563s Get:118 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 libopenmpi-dev amd64 4.1.6-5ubuntu1 [1713 kB] 2563s Get:119 http://ftpmaster.internal/ubuntu noble/universe amd64 mpi-default-dev amd64 1.15 [3118 B] 2563s Get:120 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 liblammps-dev amd64 20240207+dfsg-1 [113 kB] 2563s Get:121 http://ftpmaster.internal/ubuntu noble/universe amd64 mpi-default-bin amd64 1.15 [2336 B] 2563s Get:122 http://ftpmaster.internal/ubuntu noble-updates/universe amd64 python3-lammps amd64 20240207+dfsg-1 [70.4 kB] 2564s Fetched 181 MB in 3s (68.4 MB/s) 2564s Selecting previously unselected package m4. 2564s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74381 files and directories currently installed.) 2564s Preparing to unpack .../000-m4_1.4.19-4_amd64.deb ... 2564s Unpacking m4 (1.4.19-4) ... 2564s Selecting previously unselected package autoconf. 2564s Preparing to unpack .../001-autoconf_2.71-3_all.deb ... 2564s Unpacking autoconf (2.71-3) ... 2564s Selecting previously unselected package autotools-dev. 2564s Preparing to unpack .../002-autotools-dev_20220109.1_all.deb ... 2564s Unpacking autotools-dev (20220109.1) ... 2564s Selecting previously unselected package automake. 2564s Preparing to unpack .../003-automake_1%3a1.16.5-1.3ubuntu1_all.deb ... 2564s Unpacking automake (1:1.16.5-1.3ubuntu1) ... 2564s Selecting previously unselected package gcc-12-base:amd64. 2564s Preparing to unpack .../004-gcc-12-base_12.3.0-17ubuntu1_amd64.deb ... 2564s Unpacking gcc-12-base:amd64 (12.3.0-17ubuntu1) ... 2564s Selecting previously unselected package libisl23:amd64. 2564s Preparing to unpack .../005-libisl23_0.26-3_amd64.deb ... 2564s Unpacking libisl23:amd64 (0.26-3) ... 2564s Selecting previously unselected package libmpc3:amd64. 2564s Preparing to unpack .../006-libmpc3_1.3.1-1_amd64.deb ... 2564s Unpacking libmpc3:amd64 (1.3.1-1) ... 2564s Selecting previously unselected package cpp-12. 2564s Preparing to unpack .../007-cpp-12_12.3.0-17ubuntu1_amd64.deb ... 2564s Unpacking cpp-12 (12.3.0-17ubuntu1) ... 2565s Selecting previously unselected package libcc1-0:amd64. 2565s Preparing to unpack .../008-libcc1-0_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libcc1-0:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libgomp1:amd64. 2565s Preparing to unpack .../009-libgomp1_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libgomp1:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libitm1:amd64. 2565s Preparing to unpack .../010-libitm1_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libitm1:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libatomic1:amd64. 2565s Preparing to unpack .../011-libatomic1_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libatomic1:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libasan8:amd64. 2565s Preparing to unpack .../012-libasan8_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libasan8:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package liblsan0:amd64. 2565s Preparing to unpack .../013-liblsan0_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking liblsan0:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libtsan2:amd64. 2565s Preparing to unpack .../014-libtsan2_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libtsan2:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libubsan1:amd64. 2565s Preparing to unpack .../015-libubsan1_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libubsan1:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libquadmath0:amd64. 2565s Preparing to unpack .../016-libquadmath0_14-20240330-1ubuntu2_amd64.deb ... 2565s Unpacking libquadmath0:amd64 (14-20240330-1ubuntu2) ... 2565s Selecting previously unselected package libgcc-12-dev:amd64. 2565s Preparing to unpack .../017-libgcc-12-dev_12.3.0-17ubuntu1_amd64.deb ... 2565s Unpacking libgcc-12-dev:amd64 (12.3.0-17ubuntu1) ... 2565s Selecting previously unselected package gcc-12. 2565s Preparing to unpack .../018-gcc-12_12.3.0-17ubuntu1_amd64.deb ... 2565s Unpacking gcc-12 (12.3.0-17ubuntu1) ... 2566s Selecting previously unselected package libgfortran5:amd64. 2566s Preparing to unpack .../019-libgfortran5_14-20240330-1ubuntu2_amd64.deb ... 2566s Unpacking libgfortran5:amd64 (14-20240330-1ubuntu2) ... 2566s Selecting previously unselected package libgfortran-12-dev:amd64. 2566s Preparing to unpack .../020-libgfortran-12-dev_12.3.0-17ubuntu1_amd64.deb ... 2566s Unpacking libgfortran-12-dev:amd64 (12.3.0-17ubuntu1) ... 2566s Selecting previously unselected package gfortran-12. 2566s Preparing to unpack .../021-gfortran-12_12.3.0-17ubuntu1_amd64.deb ... 2566s Unpacking gfortran-12 (12.3.0-17ubuntu1) ... 2566s Selecting previously unselected package libaec0:amd64. 2566s Preparing to unpack .../022-libaec0_1.1.2-1_amd64.deb ... 2566s Unpacking libaec0:amd64 (1.1.2-1) ... 2566s Selecting previously unselected package libllvm17t64:amd64. 2566s Preparing to unpack .../023-libllvm17t64_1%3a17.0.6-9build3_amd64.deb ... 2566s Unpacking libllvm17t64:amd64 (1:17.0.6-9build3) ... 2567s Selecting previously unselected package libamd-comgr2:amd64. 2567s Preparing to unpack .../024-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3build2_amd64.deb ... 2567s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3build2) ... 2567s Selecting previously unselected package libdrm-amdgpu1:amd64. 2567s Preparing to unpack .../025-libdrm-amdgpu1_2.4.120-2_amd64.deb ... 2567s Unpacking libdrm-amdgpu1:amd64 (2.4.120-2) ... 2567s Selecting previously unselected package libhsakmt1:amd64. 2567s Preparing to unpack .../026-libhsakmt1_5.7.0-1build1_amd64.deb ... 2567s Unpacking libhsakmt1:amd64 (5.7.0-1build1) ... 2567s Selecting previously unselected package libhsa-runtime64-1. 2567s Preparing to unpack .../027-libhsa-runtime64-1_5.7.1-2build1_amd64.deb ... 2567s Unpacking libhsa-runtime64-1 (5.7.1-2build1) ... 2567s Selecting previously unselected package libamdhip64-5. 2567s Preparing to unpack .../028-libamdhip64-5_5.2.3-12_amd64.deb ... 2567s Unpacking libamdhip64-5 (5.2.3-12) ... 2567s Selecting previously unselected package libblas3:amd64. 2567s Preparing to unpack .../029-libblas3_3.12.0-3_amd64.deb ... 2567s Unpacking libblas3:amd64 (3.12.0-3) ... 2567s Selecting previously unselected package libpixman-1-0:amd64. 2567s Preparing to unpack .../030-libpixman-1-0_0.42.2-1_amd64.deb ... 2567s Unpacking libpixman-1-0:amd64 (0.42.2-1) ... 2567s Selecting previously unselected package libxcb-render0:amd64. 2567s Preparing to unpack .../031-libxcb-render0_1.15-1_amd64.deb ... 2567s Unpacking libxcb-render0:amd64 (1.15-1) ... 2567s Selecting previously unselected package libxcb-shm0:amd64. 2567s Preparing to unpack .../032-libxcb-shm0_1.15-1_amd64.deb ... 2567s Unpacking libxcb-shm0:amd64 (1.15-1) ... 2567s Selecting previously unselected package libxrender1:amd64. 2567s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1_amd64.deb ... 2567s Unpacking libxrender1:amd64 (1:0.9.10-1.1) ... 2567s Selecting previously unselected package libcairo2:amd64. 2567s Preparing to unpack .../034-libcairo2_1.18.0-3_amd64.deb ... 2567s Unpacking libcairo2:amd64 (1.18.0-3) ... 2567s Selecting previously unselected package libdouble-conversion3:amd64. 2567s Preparing to unpack .../035-libdouble-conversion3_3.3.0-1_amd64.deb ... 2567s Unpacking libdouble-conversion3:amd64 (3.3.0-1) ... 2567s Selecting previously unselected package libpciaccess0:amd64. 2567s Preparing to unpack .../036-libpciaccess0_0.17-3_amd64.deb ... 2567s Unpacking libpciaccess0:amd64 (0.17-3) ... 2567s Selecting previously unselected package libdrm-intel1:amd64. 2567s Preparing to unpack .../037-libdrm-intel1_2.4.120-2_amd64.deb ... 2567s Unpacking libdrm-intel1:amd64 (2.4.120-2) ... 2567s Selecting previously unselected package libdrm-nouveau2:amd64. 2567s Preparing to unpack .../038-libdrm-nouveau2_2.4.120-2_amd64.deb ... 2567s Unpacking libdrm-nouveau2:amd64 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libevent-openssl-2.1-7t64:amd64. 2568s Preparing to unpack .../043-libevent-openssl-2.1-7t64_2.1.12-stable-9ubuntu2_amd64.deb ... 2568s Unpacking libevent-openssl-2.1-7t64:amd64 (2.1.12-stable-9ubuntu2) ... 2568s Selecting previously unselected package libevent-dev. 2568s Preparing to unpack .../044-libevent-dev_2.1.12-stable-9ubuntu2_amd64.deb ... 2568s Unpacking libevent-dev (2.1.12-stable-9ubuntu2) ... 2568s Selecting previously unselected package libpsm-infinipath1. 2568s Preparing to unpack .../045-libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb ... 2568s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3) ... 2568s Selecting previously unselected package libpsm2-2. 2568s Preparing to unpack .../046-libpsm2-2_11.2.185-2_amd64.deb ... 2568s Unpacking libpsm2-2 (11.2.185-2) ... 2568s Selecting previously unselected package librdmacm1t64:amd64. 2568s Preparing to unpack .../047-librdmacm1t64_50.0-2build2_amd64.deb ... 2568s Unpacking librdmacm1t64:amd64 (50.0-2build2) ... 2568s Selecting previously unselected package libfabric1:amd64. 2568s Preparing to unpack .../048-libfabric1_1.17.0-3build2_amd64.deb ... 2568s Unpacking libfabric1:amd64 (1.17.0-3build2) ... 2568s Selecting previously unselected package libfftw3-double3:amd64. 2568s Preparing to unpack .../049-libfftw3-double3_3.3.10-1ubuntu3_amd64.deb ... 2568s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 2568s Selecting previously unselected package libvulkan1:amd64. 2568s Preparing to unpack .../050-libvulkan1_1.3.275.0-1_amd64.deb ... 2568s Unpacking libvulkan1:amd64 (1.3.275.0-1) ... 2568s Selecting previously unselected package libglapi-mesa:amd64. 2568s Preparing to unpack .../051-libglapi-mesa_24.0.3-1ubuntu4_amd64.deb ... 2568s Unpacking libglapi-mesa:amd64 (24.0.3-1ubuntu4) ... 2568s Selecting previously unselected package libxcb-dri3-0:amd64. 2568s Preparing to unpack .../052-libxcb-dri3-0_1.15-1_amd64.deb ... 2568s Unpacking libxcb-dri3-0:amd64 (1.15-1) ... 2568s Selecting previously unselected package libgl1-mesa-dri:amd64. 2568s Preparing to unpack .../053-libgl1-mesa-dri_24.0.3-1ubuntu4_amd64.deb ... 2568s Unpacking libgl1-mesa-dri:amd64 (24.0.3-1ubuntu4) ... 2568s Selecting previously unselected package libglvnd0:amd64. 2568s Preparing to unpack .../054-libglvnd0_1.7.0-1_amd64.deb ... 2568s Unpacking libglvnd0:amd64 (1.7.0-1) ... 2568s Selecting previously unselected package libx11-xcb1:amd64. 2568s Preparing to unpack .../055-libx11-xcb1_2%3a1.8.7-1_amd64.deb ... 2568s Unpacking libx11-xcb1:amd64 (2:1.8.7-1) ... 2568s Selecting previously unselected package libxcb-dri2-0:amd64. 2568s Preparing to unpack .../056-libxcb-dri2-0_1.15-1_amd64.deb ... 2568s Unpacking libxcb-dri2-0:amd64 (1.15-1) ... 2568s Selecting previously unselected package libxcb-glx0:amd64. 2568s Preparing to unpack .../057-libxcb-glx0_1.15-1_amd64.deb ... 2568s Unpacking libxcb-glx0:amd64 (1.15-1) ... 2568s Selecting previously unselected package libxcb-present0:amd64. 2568s Preparing to unpack .../058-libxcb-present0_1.15-1_amd64.deb ... 2568s Unpacking libxcb-present0:amd64 (1.15-1) ... 2568s Selecting previously unselected package libxcb-randr0:amd64. 2568s Preparing to unpack .../059-libxcb-randr0_1.15-1_amd64.deb ... 2568s Unpacking libxcb-randr0:amd64 (1.15-1) ... 2568s Selecting previously unselected package libxcb-sync1:amd64. 2568s Preparing to unpack .../060-libxcb-sync1_1.15-1_amd64.deb ... 2568s Unpacking libxcb-sync1:amd64 (1.15-1) ... 2568s Selecting previously unselected package libxcb-xfixes0:amd64. 2568s Preparing to unpack .../061-libxcb-xfixes0_1.15-1_amd64.deb ... 2568s Unpacking libxcb-xfixes0:amd64 (1.15-1) ... 2568s Selecting previously unselected package libxfixes3:amd64. 2568s Preparing to unpack .../062-libxfixes3_1%3a6.0.0-2_amd64.deb ... 2568s Unpacking libxfixes3:amd64 (1:6.0.0-2) ... 2568s Selecting previously unselected package libxshmfence1:amd64. 2568s Preparing to unpack .../063-libxshmfence1_1.3-1build4_amd64.deb ... 2568s Unpacking libxshmfence1:amd64 (1.3-1build4) ... 2568s Selecting previously unselected package libxxf86vm1:amd64. 2568s Preparing to unpack .../064-libxxf86vm1_1%3a1.1.4-1build3_amd64.deb ... 2568s Unpacking libxxf86vm1:amd64 (1:1.1.4-1build3) ... 2568s Selecting previously unselected package libglx-mesa0:amd64. 2568s Preparing to unpack .../065-libglx-mesa0_24.0.3-1ubuntu4_amd64.deb ... 2568s Unpacking libglx-mesa0:amd64 (24.0.3-1ubuntu4) ... 2568s Selecting previously unselected package libglx0:amd64. 2568s Preparing to unpack .../066-libglx0_1.7.0-1_amd64.deb ... 2568s Unpacking libglx0:amd64 (1.7.0-1) ... 2568s Selecting previously unselected package libgl1:amd64. 2568s Preparing to unpack .../067-libgl1_1.7.0-1_amd64.deb ... 2568s Unpacking libgl1:amd64 (1.7.0-1) ... 2569s Selecting previously unselected package libgl2ps1.4. 2569s Preparing to unpack .../068-libgl2ps1.4_1.4.2+dfsg1-2_amd64.deb ... 2569s Unpacking libgl2ps1.4 (1.4.2+dfsg1-2) ... 2569s Selecting previously unselected package libglew2.2:amd64. 2569s Preparing to unpack .../069-libglew2.2_2.2.0-4_amd64.deb ... 2569s Unpacking libglew2.2:amd64 (2.2.0-4) ... 2569s Selecting previously unselected package libsz2:amd64. 2569s Preparing to unpack .../070-libsz2_1.1.2-1_amd64.deb ... 2569s Unpacking libsz2:amd64 (1.1.2-1) ... 2569s Selecting previously unselected package libhdf5-103-1t64:amd64. 2569s Preparing to unpack .../071-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 2569s Unpacking libhdf5-103-1t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 2569s Selecting previously unselected package libhdf5-hl-100t64:amd64. 2569s Preparing to unpack .../072-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu4_amd64.deb ... 2569s Unpacking libhdf5-hl-100t64:amd64 (1.10.10+repack-3.1ubuntu4) ... 2569s Selecting previously unselected package libhwloc15:amd64. 2569s Preparing to unpack .../073-libhwloc15_2.10.0-1_amd64.deb ... 2569s Unpacking libhwloc15:amd64 (2.10.0-1) ... 2569s Selecting previously unselected package 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2570s Unpacking libvoro++1 (0.5+revert-to-0.4.6+dfsg1-1) ... 2570s Selecting previously unselected package libogg0:amd64. 2570s Preparing to unpack .../090-libogg0_1.3.5-3_amd64.deb ... 2570s Unpacking libogg0:amd64 (1.3.5-3) ... 2570s Selecting previously unselected package libopengl0:amd64. 2570s Preparing to unpack .../091-libopengl0_1.7.0-1_amd64.deb ... 2570s Unpacking libopengl0:amd64 (1.7.0-1) ... 2570s Selecting previously unselected package proj-data. 2570s Preparing to unpack .../092-proj-data_9.4.0-1build2_all.deb ... 2570s Unpacking proj-data (9.4.0-1build2) ... 2570s Selecting previously unselected package libproj25:amd64. 2570s Preparing to unpack .../093-libproj25_9.4.0-1build2_amd64.deb ... 2570s Unpacking libproj25:amd64 (9.4.0-1build2) ... 2570s Selecting previously unselected package libtbbmalloc2:amd64. 2570s Preparing to unpack .../094-libtbbmalloc2_2021.11.0-2ubuntu2_amd64.deb ... 2570s Unpacking libtbbmalloc2:amd64 (2021.11.0-2ubuntu2) ... 2570s Selecting previously unselected package libtbbbind-2-5:amd64. 2570s Preparing to unpack .../095-libtbbbind-2-5_2021.11.0-2ubuntu2_amd64.deb ... 2570s Unpacking libtbbbind-2-5:amd64 (2021.11.0-2ubuntu2) ... 2570s Selecting previously unselected package libtbb12:amd64. 2570s Preparing to unpack .../096-libtbb12_2021.11.0-2ubuntu2_amd64.deb ... 2570s Unpacking libtbb12:amd64 (2021.11.0-2ubuntu2) ... 2570s Selecting previously unselected package libtcl8.6:amd64. 2570s Preparing to unpack .../097-libtcl8.6_8.6.14+dfsg-1build1_amd64.deb ... 2570s Unpacking libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 2570s Selecting previously unselected package libtheora0:amd64. 2570s Preparing to unpack .../098-libtheora0_1.1.1+dfsg.1-16.1build3_amd64.deb ... 2570s Unpacking libtheora0:amd64 (1.1.1+dfsg.1-16.1build3) ... 2570s Selecting previously unselected package libxft2:amd64. 2570s Preparing to unpack .../099-libxft2_2.3.6-1_amd64.deb ... 2570s Unpacking libxft2:amd64 (2.3.6-1) ... 2570s Selecting previously unselected package x11-common. 2570s Preparing to unpack .../100-x11-common_1%3a7.7+23ubuntu2_all.deb ... 2570s Unpacking x11-common (1:7.7+23ubuntu2) ... 2570s Selecting previously unselected package libxss1:amd64. 2570s Preparing to unpack .../101-libxss1_1%3a1.2.3-1build2_amd64.deb ... 2570s Unpacking libxss1:amd64 (1:1.2.3-1build2) ... 2570s Selecting previously unselected package libtk8.6:amd64. 2570s Preparing to unpack .../102-libtk8.6_8.6.14-1build1_amd64.deb ... 2570s Unpacking libtk8.6:amd64 (8.6.14-1build1) ... 2570s Selecting previously unselected package libvtk9.1:amd64. 2570s Preparing to unpack .../103-libvtk9.1_9.1.0+really9.1.0+dfsg2-7build1_amd64.deb ... 2570s Unpacking libvtk9.1:amd64 (9.1.0+really9.1.0+dfsg2-7build1) ... 2571s Selecting previously unselected package liblammps0:amd64. 2571s Preparing to unpack .../104-liblammps0_20240207+dfsg-1_amd64.deb ... 2571s Unpacking liblammps0:amd64 (20240207+dfsg-1) ... 2571s Selecting previously unselected package 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unpack .../110-libltdl7_2.4.7-7_amd64.deb ... 2571s Unpacking libltdl7:amd64 (2.4.7-7) ... 2571s Selecting previously unselected package libltdl-dev:amd64. 2571s Preparing to unpack .../111-libltdl-dev_2.4.7-7_amd64.deb ... 2571s Unpacking libltdl-dev:amd64 (2.4.7-7) ... 2571s Selecting previously unselected package libhwloc-dev:amd64. 2571s Preparing to unpack .../112-libhwloc-dev_2.10.0-1_amd64.deb ... 2571s Unpacking libhwloc-dev:amd64 (2.10.0-1) ... 2571s Selecting previously unselected package zlib1g-dev:amd64. 2571s Preparing to unpack .../113-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu2_amd64.deb ... 2571s Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1ubuntu2) ... 2571s Selecting previously unselected package libpmix-dev:amd64. 2571s Preparing to unpack .../114-libpmix-dev_5.0.1-4_amd64.deb ... 2571s Unpacking libpmix-dev:amd64 (5.0.1-4) ... 2572s Selecting previously unselected package openmpi-bin. 2572s Preparing to unpack .../115-openmpi-bin_4.1.6-5ubuntu1_amd64.deb ... 2572s Unpacking openmpi-bin (4.1.6-5ubuntu1) ... 2572s Selecting previously unselected package libopenmpi-dev:amd64. 2572s Preparing to unpack .../116-libopenmpi-dev_4.1.6-5ubuntu1_amd64.deb ... 2572s Unpacking libopenmpi-dev:amd64 (4.1.6-5ubuntu1) ... 2572s Selecting previously unselected package mpi-default-dev. 2572s Preparing to unpack .../117-mpi-default-dev_1.15_amd64.deb ... 2572s Unpacking mpi-default-dev (1.15) ... 2572s Selecting previously unselected package liblammps-dev. 2572s Preparing to unpack .../118-liblammps-dev_20240207+dfsg-1_amd64.deb ... 2572s Unpacking liblammps-dev (20240207+dfsg-1) ... 2572s Selecting previously unselected package mpi-default-bin. 2572s Preparing to unpack .../119-mpi-default-bin_1.15_amd64.deb ... 2572s Unpacking mpi-default-bin (1.15) ... 2572s Selecting previously unselected package python3-lammps. 2572s Preparing to unpack .../120-python3-lammps_20240207+dfsg-1_amd64.deb ... 2572s Unpacking python3-lammps (20240207+dfsg-1) ... 2572s Selecting previously unselected package autopkgtest-satdep. 2572s Preparing to unpack .../121-7-autopkgtest-satdep.deb ... 2572s Unpacking autopkgtest-satdep (0) ... 2572s Setting up libxcb-dri3-0:amd64 (1.15-1) ... 2572s Setting up libtbbmalloc2:amd64 (2021.11.0-2ubuntu2) ... 2572s Setting up libpixman-1-0:amd64 (0.42.2-1) ... 2572s Setting up libx11-xcb1:amd64 (2:1.8.7-1) ... 2572s Setting up libpciaccess0:amd64 (0.17-3) ... 2572s Setting up libdouble-conversion3:amd64 (3.3.0-1) ... 2572s Setting up libdrm-nouveau2:amd64 (2.4.120-2) ... 2572s Setting up libxcb-xfixes0:amd64 (1.15-1) ... 2572s Setting up libogg0:amd64 (1.3.5-3) ... 2572s Setting up proj-data (9.4.0-1build2) ... 2572s Setting up libxrender1:amd64 (1:0.9.10-1.1) ... 2572s Setting up libproj25:amd64 (9.4.0-1build2) ... 2572s Setting up libxcb-render0:amd64 (1.15-1) ... 2572s Setting up libevent-pthreads-2.1-7t64:amd64 (2.1.12-stable-9ubuntu2) ... 2572s Setting up libdrm-radeon1:amd64 (2.4.120-2) ... 2572s Setting up libglvnd0:amd64 (1.7.0-1) 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libblas3:amd64 (3.12.0-3) ... 2573s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode 2573s Setting up libmunge2:amd64 (0.5.15-4build1) ... 2573s Setting up libllvm17t64:amd64 (1:17.0.6-9build3) ... 2573s Setting up libxfixes3:amd64 (1:6.0.0-2) ... 2573s Setting up libxcb-sync1:amd64 (1.15-1) ... 2573s Setting up libquadmath0:amd64 (14-20240330-1ubuntu2) ... 2573s Setting up libhwloc15:amd64 (2.10.0-1) ... 2573s Setting up libmpc3:amd64 (1.3.1-1) ... 2573s Setting up libatomic1:amd64 (14-20240330-1ubuntu2) ... 2573s Setting up libtcl8.6:amd64 (8.6.14+dfsg-1build1) ... 2573s Setting up libjsoncpp25:amd64 (1.9.5-6) ... 2573s Setting up libltdl7:amd64 (2.4.7-7) ... 2573s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu3) ... 2573s Setting up libglapi-mesa:amd64 (24.0.3-1ubuntu4) ... 2573s Setting up libgfortran5:amd64 (14-20240330-1ubuntu2) ... 2573s Setting up 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2578s (Reading database ... 79927 files and directories currently installed.) 2578s Removing autopkgtest-satdep (0) ... 2623s autopkgtest [02:47:13]: test command1: cd python/examples; python3 demo.py 2623s autopkgtest [02:47:13]: test command1: [----------------------- 2624s LAMMPS (7 Feb 2024 - Update 1) 2624s 2624s Python output: 2624s Natoms, mass, x[0][0] coord = 4000 1.0 16.767988851705528 2624s Temperature from compute = 0.7571533403732014 2624s Energy from equal-style variable = -5.758142569688168 2624s Velocity component from atom-style variable = -1.0131655567386921 2624s Volume from get_thermo = 4738.213693437576 2624s Natoms from get_natoms = 4000 2624s Global coords from gather_atoms = 16.767988851705528 16.621004261651628 0.14158807746974947 2624s Changed x[0][0] via scatter_atoms = 17.767988851705528 2624s OMP_NUM_THREADS environment is not set. Defaulting to 1 thread. (src/comm.cpp:98) 2624s using 1 OpenMP thread(s) per MPI task 2624s Lattice spacing in x,y,z = 1.6795962 1.6795962 1.6795962 2624s Created orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 2624s 1 by 1 by 1 MPI processor grid 2624s Created 4000 atoms 2624s using lattice units in orthogonal box = (0 0 0) to (16.795962 16.795962 16.795962) 2624s create_atoms CPU = 0.001 seconds 2624s Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule 2624s Neighbor list info ... 2624s update: every = 20 steps, delay = 0 steps, check = no 2624s max neighbors/atom: 2000, page size: 100000 2624s master list distance cutoff = 2.8 2624s ghost atom cutoff = 2.8 2624s binsize = 1.4, bins = 12 12 12 2624s 1 neighbor lists, perpetual/occasional/extra = 1 0 0 2624s (1) pair lj/cut, perpetual 2624s attributes: half, newton on 2624s pair build: half/bin/atomonly/newton 2624s stencil: half/bin/3d 2624s bin: standard 2624s Setting up Verlet run ... 2624s Unit style : lj 2624s Current step : 0 2624s Time step : 0.005 2624s Per MPI rank memory allocation (min/avg/max) = 3.763 | 3.763 | 3.763 Mbytes 2624s Step Temp E_pair E_mol TotEng Press 2624s 0 1.44 -6.7733681 0 -4.6139081 -5.0199732 2624s 100 0.75715334 -5.7581426 0 -4.6226965 0.20850222 2624s Loop time of 0.236351 on 1 procs for 100 steps with 4000 atoms 2624s 2624s Performance: 182778.671 tau/day, 423.099 timesteps/s, 1.692 Matom-step/s 2624s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads 2624s 2624s MPI task timing breakdown: 2624s Section | min time | avg time | max time |%varavg| %total 2624s --------------------------------------------------------------- 2624s Pair | 0.19755 | 0.19755 | 0.19755 | 0.0 | 83.58 2624s Neigh | 0.02948 | 0.02948 | 0.02948 | 0.0 | 12.47 2624s Comm | 0.0052273 | 0.0052273 | 0.0052273 | 0.0 | 2.21 2624s Output | 3.2671e-05 | 3.2671e-05 | 3.2671e-05 | 0.0 | 0.01 2624s Modify | 0.0034429 | 0.0034429 | 0.0034429 | 0.0 | 1.46 2624s Other | | 0.0006157 | | | 0.26 2624s 2624s Nlocal: 4000 ave 4000 max 4000 min 2624s Histogram: 1 0 0 0 0 0 0 0 0 0 2624s Nghost: 5754 ave 5754 max 5754 min 2624s Histogram: 1 0 0 0 0 0 0 0 0 0 2624s Neighs: 150362 ave 150362 max 150362 min 2624s Histogram: 1 0 0 0 0 0 0 0 0 0 2624s 2624s Total # of neighbors = 150362 2624s Ave neighs/atom = 37.5905 2624s Neighbor list builds = 5 2624s Dangerous builds not checked 2624s Total wall time: 0:00:00 2624s autopkgtest [02:47:14]: test command1: -----------------------] 2624s autopkgtest [02:47:14]: test command1: - - - - - - - - - - results - - - - - - - - - - 2624s command1 PASS 2625s autopkgtest [02:47:15]: @@@@@@@@@@@@@@@@@@@@ summary 2625s crack PASS 2625s dipole PASS 2625s ellipse PASS 2625s flow PASS 2625s friction PASS 2625s hugo PASS 2625s command1 PASS 2638s Creating nova instance adt-noble-amd64-lammps-20240409-020329-juju-7f2275-prod-proposed-migration-environment-3-e35df194-fede-4182-9d2b-1cd2e8b1ec55 from image adt/ubuntu-noble-amd64-server-20240408.img (UUID 30d44b2b-45a1-4839-a24b-65f68dcab139)... 2638s Creating nova instance adt-noble-amd64-lammps-20240409-020329-juju-7f2275-prod-proposed-migration-environment-3-e35df194-fede-4182-9d2b-1cd2e8b1ec55 from image adt/ubuntu-noble-amd64-server-20240408.img (UUID 30d44b2b-45a1-4839-a24b-65f68dcab139)...