0s autopkgtest [02:39:49]: starting date and time: 2024-03-26 02:39:49+0000
  0s autopkgtest [02:39:49]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [02:39:49]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.79vztrjr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed --apt-upgrade elkcode --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=fftw3/3.3.10-1ubuntu2 openmpi/4.1.6-7ubuntu1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@lcy02-87.secgroup --name adt-noble-amd64-elkcode-20240326-023949-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-amd64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
929s autopkgtest [02:55:18]: testbed dpkg architecture: amd64
929s autopkgtest [02:55:18]: testbed apt version: 2.7.12
929s autopkgtest [02:55:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup
929s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
929s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [4027 kB]
929s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [7592 B]
929s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB]
929s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.0 kB]
929s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 Packages [731 kB]
929s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main i386 Packages [483 kB]
929s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/main amd64 c-n-f Metadata [3508 B]
929s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted i386 Packages [6700 B]
929s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 Packages [37.9 kB]
929s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/restricted amd64 c-n-f Metadata [116 B]
929s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 Packages [4390 kB]
929s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/universe i386 Packages [1260 kB]
929s Get:14 http://ftpmaster.internal/ubuntu noble-proposed/universe amd64 c-n-f Metadata [9396 B]
929s Get:15 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 Packages [96.8 kB]
929s Get:16 http://ftpmaster.internal/ubuntu noble-proposed/multiverse i386 Packages [28.6 kB]
929s Get:17 http://ftpmaster.internal/ubuntu noble-proposed/multiverse amd64 c-n-f Metadata [196 B]
933s Fetched 11.7 MB in 2s (7294 kB/s)
933s Reading package lists...
935s Reading package lists...
935s Building dependency tree...
935s Reading state information...
936s Calculating upgrade...
936s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
936s Reading package lists...
936s Building dependency tree...
936s Reading state information...
937s 0 upgraded, 0 newly installed, 0 to remove and 248 not upgraded.
937s sh: Attempting to set up Debian/Ubuntu apt sources automatically
937s sh: Distribution appears to be Ubuntu
938s Reading package lists...
939s Building dependency tree...
939s Reading state information...
939s eatmydata is already the newest version (131-1).
939s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
939s Reading package lists...
939s Building dependency tree...
939s Reading state information...
940s dbus is already the newest version (1.14.10-4ubuntu1).
940s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
940s Reading package lists...
940s Building dependency tree...
940s Reading state information...
941s rng-tools-debian is already the newest version (2.4).
941s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
941s Reading package lists...
941s Building dependency tree...
941s Reading state information...
942s The following packages will be REMOVED:
942s   cloud-init* python3-configobj* python3-debconf*
942s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
942s After this operation, 3256 kB disk space will be freed.
942s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71864 files and directories currently installed.)
942s Removing cloud-init (24.1.2-0ubuntu1) ...
943s Removing python3-configobj (5.0.8-3) ...
943s Removing python3-debconf (1.5.86) ...
943s Processing triggers for man-db (2.12.0-3) ...
944s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71475 files and directories currently installed.)
944s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ...
944s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
944s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
944s invoke-rc.d: policy-rc.d denied execution of try-restart.
945s Reading package lists...
945s Building dependency tree...
945s Reading state information...
945s linux-generic is already the newest version (6.8.0-11.11+1).
945s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
946s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
946s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
946s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
948s Reading package lists...
948s Reading package lists...
948s Building dependency tree...
948s Reading state information...
949s Calculating upgrade...
949s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
949s Reading package lists...
949s Building dependency tree...
949s Reading state information...
950s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
950s autopkgtest [02:55:39]: rebooting testbed after setup commands that affected boot
1143s autopkgtest [02:58:52]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 00:29:05 UTC 2024
1144s autopkgtest [02:58:53]: @@@@@@@@@@@@@@@@@@@@ apt-source elkcode
1145s Get:1 http://ftpmaster.internal/ubuntu noble/universe elkcode 9.2.12-1 (dsc) [2084 B]
1145s Get:2 http://ftpmaster.internal/ubuntu noble/universe elkcode 9.2.12-1 (tar) [3299 kB]
1145s Get:3 http://ftpmaster.internal/ubuntu noble/universe elkcode 9.2.12-1 (diff) [10.3 kB]
1145s gpgv: Signature made Fri Dec 29 15:36:37 2023 UTC
1145s gpgv:                using RSA key 9CA877749FAB2E4FA96862ECDC686A27B43481B0
1145s gpgv: Can't check signature: No public key
1145s dpkg-source: warning: cannot verify inline signature for ./elkcode_9.2.12-1.dsc: no acceptable signature found
1146s autopkgtest [02:58:55]: testing package elkcode version 9.2.12-1
1146s autopkgtest [02:58:55]: build not needed
1146s autopkgtest [02:58:55]: test testsuite.sh: preparing testbed
1146s Reading package lists...
1147s Building dependency tree...
1147s Reading state information...
1147s Starting pkgProblemResolver with broken count: 0
1147s Starting 2 pkgProblemResolver with broken count: 0
1147s Done
1148s The following additional packages will be installed:
1148s   elk-lapw libamd-comgr2 libamdhip64-5 libatomic1 libblas3 libdrm-amdgpu1
1148s   libevent-pthreads-2.1-7 libfabric1 libfftw3-double3 libfftw3-single3
1148s   libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1 libhwloc-plugins
1148s   libhwloc15 liblapack3 libllvm17 libmunge2 libopenmpi3 libpciaccess0 libpmix2
1148s   libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0 libxc9 libxnvctrl0
1148s   mpi-default-bin ocl-icd-libopencl1 openmpi-bin openmpi-common
1148s Suggested packages:
1148s   gnuplot xcrysden libfftw3-bin libfftw3-dev libhwloc-contrib-plugins
1148s   opencl-icd gfortran | fortran-compiler
1148s The following NEW packages will be installed:
1148s   autopkgtest-satdep elk-lapw libamd-comgr2 libamdhip64-5 libatomic1 libblas3
1148s   libdrm-amdgpu1 libevent-pthreads-2.1-7 libfabric1 libfftw3-double3
1148s   libfftw3-single3 libgfortran5 libgomp1 libhsa-runtime64-1 libhsakmt1
1148s   libhwloc-plugins libhwloc15 liblapack3 libllvm17 libmunge2 libopenmpi3
1148s   libpciaccess0 libpmix2 libpsm-infinipath1 libpsm2-2 librdmacm1t64 libucx0
1148s   libxc9 libxnvctrl0 mpi-default-bin ocl-icd-libopencl1 openmpi-bin
1148s   openmpi-common
1148s 0 upgraded, 33 newly installed, 0 to remove and 0 not upgraded.
1148s Need to get 67.3 MB/67.3 MB of archives.
1148s After this operation, 260 MB of additional disk space will be used.
1148s Get:1 /tmp/autopkgtest.yjho5k/1-autopkgtest-satdep.deb autopkgtest-satdep amd64 0 [704 B]
1148s Get:2 http://ftpmaster.internal/ubuntu noble/main amd64 libblas3 amd64 3.12.0-3 [238 kB]
1148s Get:3 http://ftpmaster.internal/ubuntu noble/main amd64 libgomp1 amd64 14-20240303-1ubuntu1 [147 kB]
1148s Get:4 http://ftpmaster.internal/ubuntu noble/main amd64 libfftw3-double3 amd64 3.3.10-1ubuntu1 [835 kB]
1148s Get:5 http://ftpmaster.internal/ubuntu noble/main amd64 libfftw3-single3 amd64 3.3.10-1ubuntu1 [869 kB]
1148s Get:6 http://ftpmaster.internal/ubuntu noble/main amd64 libgfortran5 amd64 14-20240303-1ubuntu1 [924 kB]
1148s Get:7 http://ftpmaster.internal/ubuntu noble/main amd64 liblapack3 amd64 3.12.0-3 [2649 kB]
1148s Get:8 http://ftpmaster.internal/ubuntu noble/main amd64 libevent-pthreads-2.1-7 amd64 2.1.12-stable-9 [7802 B]
1148s Get:9 http://ftpmaster.internal/ubuntu noble/main amd64 libatomic1 amd64 14-20240303-1ubuntu1 [10.4 kB]
1148s Get:10 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm-infinipath1 amd64 3.3+20.604758e7-6.3 [178 kB]
1148s Get:11 http://ftpmaster.internal/ubuntu noble/universe amd64 libpsm2-2 amd64 11.2.185-2 [196 kB]
1148s Get:12 http://ftpmaster.internal/ubuntu noble/main amd64 librdmacm1t64 amd64 50.0-2 [70.7 kB]
1148s Get:13 http://ftpmaster.internal/ubuntu noble/universe amd64 libfabric1 amd64 1.17.0-3build1 [657 kB]
1148s Get:14 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc15 amd64 2.10.0-1 [171 kB]
1148s Get:15 http://ftpmaster.internal/ubuntu noble/universe amd64 libmunge2 amd64 0.5.15-3ubuntu1 [14.6 kB]
1148s Get:16 http://ftpmaster.internal/ubuntu noble/main amd64 libpciaccess0 amd64 0.17-3 [18.9 kB]
1148s Get:17 http://ftpmaster.internal/ubuntu noble/main amd64 libxnvctrl0 amd64 510.47.03-0ubuntu1 [11.5 kB]
1148s Get:18 http://ftpmaster.internal/ubuntu noble/universe amd64 ocl-icd-libopencl1 amd64 2.3.2-1 [38.3 kB]
1148s Get:19 http://ftpmaster.internal/ubuntu noble/universe amd64 libhwloc-plugins amd64 2.10.0-1 [15.8 kB]
1148s Get:20 http://ftpmaster.internal/ubuntu noble/universe amd64 libpmix2 amd64 5.0.1-4 [695 kB]
1148s Get:21 http://ftpmaster.internal/ubuntu noble/main amd64 libllvm17 amd64 1:17.0.6-5build1 [26.2 MB]
1148s Get:22 http://ftpmaster.internal/ubuntu noble/universe amd64 libamd-comgr2 amd64 6.0+git20231212.4510c28+dfsg-3 [14.4 MB]
1148s Get:23 http://ftpmaster.internal/ubuntu noble/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [20.4 kB]
1148s Get:24 http://ftpmaster.internal/ubuntu noble/universe amd64 libhsakmt1 amd64 5.7.0-1 [63.0 kB]
1148s Get:25 http://ftpmaster.internal/ubuntu noble/universe amd64 libhsa-runtime64-1 amd64 5.7.1-1 [491 kB]
1148s Get:26 http://ftpmaster.internal/ubuntu noble/universe amd64 libamdhip64-5 amd64 5.2.3-12 [5204 kB]
1148s Get:27 http://ftpmaster.internal/ubuntu noble/universe amd64 libucx0 amd64 1.16.0+ds-4 [1139 kB]
1148s Get:28 http://ftpmaster.internal/ubuntu noble/universe amd64 libopenmpi3 amd64 4.1.6-5ubuntu1 [3177 kB]
1148s Get:29 http://ftpmaster.internal/ubuntu noble/universe amd64 libxc9 amd64 5.2.3-1ubuntu1 [4007 kB]
1148s Get:30 http://ftpmaster.internal/ubuntu noble/universe amd64 openmpi-common all 4.1.6-5ubuntu1 [178 kB]
1148s Get:31 http://ftpmaster.internal/ubuntu noble/universe amd64 openmpi-bin amd64 4.1.6-5ubuntu1 [124 kB]
1148s Get:32 http://ftpmaster.internal/ubuntu noble/universe amd64 mpi-default-bin amd64 1.15 [2336 B]
1148s Get:33 http://ftpmaster.internal/ubuntu noble/universe amd64 elk-lapw amd64 9.2.12-1 [4541 kB]
1149s Fetched 67.3 MB in 1s (132 MB/s)
1149s Selecting previously unselected package libblas3:amd64.
1149s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 71420 files and directories currently installed.)
1149s Preparing to unpack .../00-libblas3_3.12.0-3_amd64.deb ...
1149s Unpacking libblas3:amd64 (3.12.0-3) ...
1149s Selecting previously unselected package libgomp1:amd64.
1149s Preparing to unpack .../01-libgomp1_14-20240303-1ubuntu1_amd64.deb ...
1149s Unpacking libgomp1:amd64 (14-20240303-1ubuntu1) ...
1149s Selecting previously unselected package libfftw3-double3:amd64.
1149s Preparing to unpack .../02-libfftw3-double3_3.3.10-1ubuntu1_amd64.deb ...
1149s Unpacking libfftw3-double3:amd64 (3.3.10-1ubuntu1) ...
1149s Selecting previously unselected package libfftw3-single3:amd64.
1149s Preparing to unpack .../03-libfftw3-single3_3.3.10-1ubuntu1_amd64.deb ...
1149s Unpacking libfftw3-single3:amd64 (3.3.10-1ubuntu1) ...
1149s Selecting previously unselected package libgfortran5:amd64.
1149s Preparing to unpack .../04-libgfortran5_14-20240303-1ubuntu1_amd64.deb ...
1149s Unpacking libgfortran5:amd64 (14-20240303-1ubuntu1) ...
1149s Selecting previously unselected package liblapack3:amd64.
1149s Preparing to unpack .../05-liblapack3_3.12.0-3_amd64.deb ...
1149s Unpacking liblapack3:amd64 (3.12.0-3) ...
1149s Selecting previously unselected package libevent-pthreads-2.1-7:amd64.
1149s Preparing to unpack .../06-libevent-pthreads-2.1-7_2.1.12-stable-9_amd64.deb ...
1149s Unpacking libevent-pthreads-2.1-7:amd64 (2.1.12-stable-9) ...
1149s Selecting previously unselected package libatomic1:amd64.
1149s Preparing to unpack .../07-libatomic1_14-20240303-1ubuntu1_amd64.deb ...
1149s Unpacking libatomic1:amd64 (14-20240303-1ubuntu1) ...
1149s Selecting previously unselected package libpsm-infinipath1.
1149s Preparing to unpack .../08-libpsm-infinipath1_3.3+20.604758e7-6.3_amd64.deb ...
1149s Unpacking libpsm-infinipath1 (3.3+20.604758e7-6.3) ...
1149s Selecting previously unselected package libpsm2-2.
1149s Preparing to unpack .../09-libpsm2-2_11.2.185-2_amd64.deb ...
1149s Unpacking libpsm2-2 (11.2.185-2) ...
1149s Selecting previously unselected package librdmacm1t64:amd64.
1149s Preparing to unpack .../10-librdmacm1t64_50.0-2_amd64.deb ...
1149s Unpacking librdmacm1t64:amd64 (50.0-2) ...
1149s Selecting previously unselected package libfabric1:amd64.
1149s Preparing to unpack .../11-libfabric1_1.17.0-3build1_amd64.deb ...
1149s Unpacking libfabric1:amd64 (1.17.0-3build1) ...
1149s Selecting previously unselected package libhwloc15:amd64.
1149s Preparing to unpack .../12-libhwloc15_2.10.0-1_amd64.deb ...
1149s Unpacking libhwloc15:amd64 (2.10.0-1) ...
1149s Selecting previously unselected package libmunge2:amd64.
1149s Preparing to unpack .../13-libmunge2_0.5.15-3ubuntu1_amd64.deb ...
1149s Unpacking libmunge2:amd64 (0.5.15-3ubuntu1) ...
1149s Selecting previously unselected package libpciaccess0:amd64.
1149s Preparing to unpack .../14-libpciaccess0_0.17-3_amd64.deb ...
1149s Unpacking libpciaccess0:amd64 (0.17-3) ...
1149s Selecting previously unselected package libxnvctrl0:amd64.
1149s Preparing to unpack .../15-libxnvctrl0_510.47.03-0ubuntu1_amd64.deb ...
1149s Unpacking libxnvctrl0:amd64 (510.47.03-0ubuntu1) ...
1149s Selecting previously unselected package ocl-icd-libopencl1:amd64.
1149s Preparing to unpack .../16-ocl-icd-libopencl1_2.3.2-1_amd64.deb ...
1149s Unpacking ocl-icd-libopencl1:amd64 (2.3.2-1) ...
1149s Selecting previously unselected package libhwloc-plugins:amd64.
1149s Preparing to unpack .../17-libhwloc-plugins_2.10.0-1_amd64.deb ...
1149s Unpacking libhwloc-plugins:amd64 (2.10.0-1) ...
1149s Selecting previously unselected package libpmix2:amd64.
1149s Preparing to unpack .../18-libpmix2_5.0.1-4_amd64.deb ...
1149s Unpacking libpmix2:amd64 (5.0.1-4) ...
1149s Selecting previously unselected package libllvm17:amd64.
1149s Preparing to unpack .../19-libllvm17_1%3a17.0.6-5build1_amd64.deb ...
1149s Unpacking libllvm17:amd64 (1:17.0.6-5build1) ...
1150s Selecting previously unselected package libamd-comgr2:amd64.
1150s Preparing to unpack .../20-libamd-comgr2_6.0+git20231212.4510c28+dfsg-3_amd64.deb ...
1150s Unpacking libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3) ...
1150s Selecting previously unselected package libdrm-amdgpu1:amd64.
1150s Preparing to unpack .../21-libdrm-amdgpu1_2.4.120-2_amd64.deb ...
1150s Unpacking libdrm-amdgpu1:amd64 (2.4.120-2) ...
1150s Selecting previously unselected package libhsakmt1:amd64.
1150s Preparing to unpack .../22-libhsakmt1_5.7.0-1_amd64.deb ...
1150s Unpacking libhsakmt1:amd64 (5.7.0-1) ...
1150s Selecting previously unselected package libhsa-runtime64-1.
1150s Preparing to unpack .../23-libhsa-runtime64-1_5.7.1-1_amd64.deb ...
1150s Unpacking libhsa-runtime64-1 (5.7.1-1) ...
1150s Selecting previously unselected package libamdhip64-5.
1150s Preparing to unpack .../24-libamdhip64-5_5.2.3-12_amd64.deb ...
1150s Unpacking libamdhip64-5 (5.2.3-12) ...
1150s Selecting previously unselected package libucx0:amd64.
1150s Preparing to unpack .../25-libucx0_1.16.0+ds-4_amd64.deb ...
1150s Unpacking libucx0:amd64 (1.16.0+ds-4) ...
1150s Selecting previously unselected package libopenmpi3:amd64.
1150s Preparing to unpack .../26-libopenmpi3_4.1.6-5ubuntu1_amd64.deb ...
1150s Unpacking libopenmpi3:amd64 (4.1.6-5ubuntu1) ...
1151s Selecting previously unselected package libxc9:amd64.
1151s Preparing to unpack .../27-libxc9_5.2.3-1ubuntu1_amd64.deb ...
1151s Unpacking libxc9:amd64 (5.2.3-1ubuntu1) ...
1151s Selecting previously unselected package openmpi-common.
1151s Preparing to unpack .../28-openmpi-common_4.1.6-5ubuntu1_all.deb ...
1151s Unpacking openmpi-common (4.1.6-5ubuntu1) ...
1151s Selecting previously unselected package openmpi-bin.
1151s Preparing to unpack .../29-openmpi-bin_4.1.6-5ubuntu1_amd64.deb ...
1151s Unpacking openmpi-bin (4.1.6-5ubuntu1) ...
1151s Selecting previously unselected package mpi-default-bin.
1151s Preparing to unpack .../30-mpi-default-bin_1.15_amd64.deb ...
1151s Unpacking mpi-default-bin (1.15) ...
1151s Selecting previously unselected package elk-lapw.
1151s Preparing to unpack .../31-elk-lapw_9.2.12-1_amd64.deb ...
1151s Unpacking elk-lapw (9.2.12-1) ...
1151s Selecting previously unselected package autopkgtest-satdep.
1151s Preparing to unpack .../32-1-autopkgtest-satdep.deb ...
1151s Unpacking autopkgtest-satdep (0) ...
1151s Setting up libpciaccess0:amd64 (0.17-3) ...
1151s Setting up libgomp1:amd64 (14-20240303-1ubuntu1) ...
1151s Setting up libxnvctrl0:amd64 (510.47.03-0ubuntu1) ...
1151s Setting up libblas3:amd64 (3.12.0-3) ...
1151s update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode
1151s Setting up libmunge2:amd64 (0.5.15-3ubuntu1) ...
1151s Setting up libhwloc15:amd64 (2.10.0-1) ...
1151s Setting up libatomic1:amd64 (14-20240303-1ubuntu1) ...
1151s Setting up libfftw3-double3:amd64 (3.3.10-1ubuntu1) ...
1151s Setting up libgfortran5:amd64 (14-20240303-1ubuntu1) ...
1151s Setting up ocl-icd-libopencl1:amd64 (2.3.2-1) ...
1151s Setting up libpsm2-2 (11.2.185-2) ...
1151s Setting up openmpi-common (4.1.6-5ubuntu1) ...
1151s Setting up librdmacm1t64:amd64 (50.0-2) ...
1151s Setting up libpsm-infinipath1 (3.3+20.604758e7-6.3) ...
1151s update-alternatives: using /usr/lib/libpsm1/libpsm_infinipath.so.1.16 to provide /usr/lib/x86_64-linux-gnu/libpsm_infinipath.so.1 (libpsm_infinipath.so.1) in auto mode
1151s Setting up libllvm17:amd64 (1:17.0.6-5build1) ...
1151s Setting up libevent-pthreads-2.1-7:amd64 (2.1.12-stable-9) ...
1151s Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ...
1151s Setting up libxc9:amd64 (5.2.3-1ubuntu1) ...
1151s Setting up libfabric1:amd64 (1.17.0-3build1) ...
1151s Setting up liblapack3:amd64 (3.12.0-3) ...
1151s update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode
1151s Setting up libfftw3-single3:amd64 (3.3.10-1ubuntu1) ...
1151s Setting up libhwloc-plugins:amd64 (2.10.0-1) ...
1151s Setting up libamd-comgr2:amd64 (6.0+git20231212.4510c28+dfsg-3) ...
1151s Setting up libhsakmt1:amd64 (5.7.0-1) ...
1151s Setting up libpmix2:amd64 (5.0.1-4) ...
1151s Setting up libhsa-runtime64-1 (5.7.1-1) ...
1151s Setting up libamdhip64-5 (5.2.3-12) ...
1151s Setting up libucx0:amd64 (1.16.0+ds-4) ...
1151s Setting up libopenmpi3:amd64 (4.1.6-5ubuntu1) ...
1151s Setting up openmpi-bin (4.1.6-5ubuntu1) ...
1151s update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
1151s update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
1151s Setting up mpi-default-bin (1.15) ...
1151s Setting up elk-lapw (9.2.12-1) ...
1151s Setting up autopkgtest-satdep (0) ...
1151s Processing triggers for man-db (2.12.0-3) ...
1152s Processing triggers for libc-bin (2.39-0ubuntu6) ...
1154s (Reading database ... 72539 files and directories currently installed.)
1154s Removing autopkgtest-satdep (0) ...
1154s autopkgtest [02:59:03]: test testsuite.sh: [-----------------------
1155s 
1155s Running test in directory test_001...
1155s 
1155s +---------------------------------+
1155s | Elk code version 9.2.12 started |
1155s +---------------------------------+
1155s 
1155s Number of MPI processes :      1
1155s Number of OpenMP threads per MPI process :    2
1155s Total number of threads (MPI x OpenMP) :      2
1155s Maximum OpenMP nesting level :    4
1155s Number of OpenMP threads at first nesting level :    2
1155s Number of MKL threads :    2
1155s 
1155s RAM disk enabled
1155s 
1155s +-----------------------+
1155s | Current task :      0 |
1155s +-----------------------+
1155s Info(checkmt): changed muffin-tin radius of species   3 (Cu) from   2.4000 to   1.9694
1155s Info(checkmt): changed muffin-tin radius of species   4 (O) from   1.8000 to   1.4770
1155s 
1155s Info(findsymcrys): atomic basis shift (lattice) :
1155s   0.5000000000      0.5000000000      0.5000000000    
1155s See GEOMETRY.OUT for new atomic positions
1163s 
1163s Warning(gndstate): failed to reach self-consistency after    4 loops
1165s 
1165s +-----------------------+
1165s | Current task :      1 |
1165s +-----------------------+
1172s 
1172s Warning(gndstate): failed to reach self-consistency after    4 loops
1174s 
1174s +-----------------------+
1174s | Current task :    115 |
1174s +-----------------------+
1176s 
1176s Info(writeefg): electric field gradient written to EFG.OUT
1176s 
1176s +-----------------------+
1176s | Current task :    500 |
1176s +-----------------------+
1176s 
1176s Info(testcheck): passed all tests
1176s 
1176s +------------------+
1176s | Elk code stopped |
1176s +------------------+
1176s  Passed
1176s 
1176s Running test in directory test_002...
1176s 
1176s +---------------------------------+
1176s | Elk code version 9.2.12 started |
1176s +---------------------------------+
1176s 
1176s Number of MPI processes :      1
1176s Number of OpenMP threads per MPI process :    2
1176s Total number of threads (MPI x OpenMP) :      2
1176s Maximum OpenMP nesting level :    4
1176s Number of OpenMP threads at first nesting level :    2
1176s Number of MKL threads :    2
1176s 
1176s RAM disk enabled
1176s 
1176s +-----------------------+
1176s | Current task :      0 |
1176s +-----------------------+
1176s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3202
1177s 
1177s Warning(gndstate): failed to reach self-consistency after    5 loops
1177s 
1177s +-----------------------+
1177s | Current task :    500 |
1177s +-----------------------+
1177s 
1177s Info(testcheck): passed all tests
1177s 
1177s +------------------+
1177s | Elk code stopped |
1177s +------------------+
1177s  Passed
1177s 
1177s Running test in directory test_003...
1177s 
1177s +---------------------------------+
1177s | Elk code version 9.2.12 started |
1177s +---------------------------------+
1177s 
1177s Number of MPI processes :      1
1177s Number of OpenMP threads per MPI process :    2
1177s Total number of threads (MPI x OpenMP) :      2
1177s Maximum OpenMP nesting level :    4
1177s Number of OpenMP threads at first nesting level :    2
1177s Number of MKL threads :    2
1177s 
1177s RAM disk enabled
1177s 
1177s +-----------------------+
1177s | Current task :      0 |
1177s +-----------------------+
1177s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1436
1177s 
1177s Info(findsymcrys): atomic basis shift (lattice) :
1177s   0.3650000000      0.3650000000      0.3650000000    
1177s See GEOMETRY.OUT for new atomic positions
1178s 
1178s Warning(gndstate): failed to reach self-consistency after   10 loops
1178s 
1178s +-----------------------+
1178s | Current task :    500 |
1178s +-----------------------+
1178s 
1178s Info(testcheck): passed all tests
1178s 
1178s +------------------+
1178s | Elk code stopped |
1178s +------------------+
1178s  Passed
1178s 
1178s Running test in directory test_005...
1178s 
1178s +---------------------------------+
1178s | Elk code version 9.2.12 started |
1178s +---------------------------------+
1178s 
1178s Number of MPI processes :      1
1178s Number of OpenMP threads per MPI process :    2
1178s Total number of threads (MPI x OpenMP) :      2
1178s Maximum OpenMP nesting level :    4
1178s Number of OpenMP threads at first nesting level :    2
1178s Number of MKL threads :    2
1178s 
1178s RAM disk enabled
1178s 
1178s +-----------------------+
1178s | Current task :      0 |
1178s +-----------------------+
1178s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3615
1179s 
1179s Warning(gndstate): failed to reach self-consistency after    5 loops
1179s 
1179s +-----------------------+
1179s | Current task :    500 |
1179s +-----------------------+
1179s 
1179s Info(testcheck): passed all tests
1179s 
1179s +------------------+
1179s | Elk code stopped |
1179s +------------------+
1179s  Passed
1179s 
1179s Running test in directory test_007...
1180s 
1180s +---------------------------------+
1180s | Elk code version 9.2.12 started |
1180s +---------------------------------+
1180s 
1180s Number of MPI processes :      1
1180s Number of OpenMP threads per MPI process :    2
1180s Total number of threads (MPI x OpenMP) :      2
1180s Maximum OpenMP nesting level :    4
1180s Number of OpenMP threads at first nesting level :    2
1180s Number of MKL threads :    2
1180s 
1180s RAM disk enabled
1180s 
1180s +-----------------------+
1180s | Current task :      0 |
1180s +-----------------------+
1193s 
1193s +-----------------------+
1193s | Current task :     15 |
1193s +-----------------------+
1193s 
1193s Info(writelsj):
1193s  muffin-tin L, S and J expectation values written to LSJ.OUT
1193s 
1193s +-----------------------+
1193s | Current task :     16 |
1193s +-----------------------+
1194s 
1194s Info(writelsj):
1194s  muffin-tin L, S and J expectation values for each k-point and state
1194s   in kstlist written to LSJ_KST.OUT
1194s 
1194s +-----------------------+
1194s | Current task :    500 |
1194s +-----------------------+
1194s 
1194s Info(testcheck): passed all tests
1194s 
1194s +------------------+
1194s | Elk code stopped |
1194s +------------------+
1194s  Passed
1194s 
1194s Running test in directory test_009...
1194s 
1194s +---------------------------------+
1194s | Elk code version 9.2.12 started |
1194s +---------------------------------+
1194s 
1194s Number of MPI processes :      1
1194s Number of OpenMP threads per MPI process :    2
1194s Total number of threads (MPI x OpenMP) :      2
1194s Maximum OpenMP nesting level :    4
1194s Number of OpenMP threads at first nesting level :    2
1194s Number of MKL threads :    2
1194s 
1194s RAM disk enabled
1194s 
1194s +-----------------------+
1194s | Current task :      0 |
1194s +-----------------------+
1194s Info(checkmt): changed muffin-tin radius of species   1 (B) from   1.8000 to   1.6129
1194s Info(checkmt): changed muffin-tin radius of species   2 (N+) from   1.4500 to   1.2993
1195s 
1195s Warning(gndstate): failed to reach self-consistency after    6 loops
1195s 
1195s +-----------------------+
1195s | Current task :    140 |
1195s +-----------------------+
1195s Info(elnes):      1 of      8 k-points
1195s Info(elnes):      5 of      8 k-points
1195s Info(elnes):      2 of      8 k-points
1195s Info(elnes):      6 of      8 k-points
1195s Info(elnes):      3 of      8 k-points
1195s Info(elnes):      7 of      8 k-points
1195s Info(elnes):      4 of      8 k-points
1195s Info(elnes):      8 of      8 k-points
1196s 
1196s Info(elnes):
1196s  ELNES double differential cross-section written to ELNES.OUT
1196s 
1196s +-----------------------+
1196s | Current task :    500 |
1196s +-----------------------+
1196s 
1196s Info(testcheck): passed all tests
1196s 
1196s +------------------+
1196s | Elk code stopped |
1196s +------------------+
1196s  Passed
1196s 
1196s Running test in directory test_010...
1196s 
1196s +---------------------------------+
1196s | Elk code version 9.2.12 started |
1196s +---------------------------------+
1196s 
1196s Number of MPI processes :      1
1196s Number of OpenMP threads per MPI process :    2
1196s Total number of threads (MPI x OpenMP) :      2
1196s Maximum OpenMP nesting level :    4
1196s Number of OpenMP threads at first nesting level :    2
1196s Number of MKL threads :    2
1196s 
1196s RAM disk enabled
1196s 
1196s +-----------------------+
1196s | Current task :      0 |
1196s +-----------------------+
1196s Info(checkmt): changed muffin-tin radius of species   1 (O) from   1.8000 to   0.9906
1196s Info(checkmt): changed muffin-tin radius of species   2 (H) from   1.4000 to   0.7704
1196s 
1196s Warning(linengy): could not find   1 linearisation energies in s.c. loop     1
1197s 
1197s Warning(gndstate): failed to reach self-consistency after    2 loops
1197s 
1197s Warning(linengy): could not find   1 linearisation energies in s.c. loop     2
1198s 
1198s +-----------------------+
1198s | Current task :    500 |
1198s +-----------------------+
1198s 
1198s Info(testcheck): passed all tests
1198s 
1198s +------------------+
1198s | Elk code stopped |
1198s +------------------+
1198s  Passed
1198s 
1198s Running test in directory test_011...
1198s 
1198s +---------------------------------+
1198s | Elk code version 9.2.12 started |
1198s +---------------------------------+
1198s 
1198s Number of MPI processes :      1
1198s Number of OpenMP threads per MPI process :    2
1198s Total number of threads (MPI x OpenMP) :      2
1198s Maximum OpenMP nesting level :    4
1198s Number of OpenMP threads at first nesting level :    2
1198s Number of MKL threads :    2
1198s 
1198s RAM disk enabled
1198s 
1198s +-----------------------+
1198s | Current task :      0 |
1198s +-----------------------+
1198s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1964
1198s 
1198s Info(findsymcrys): atomic basis shift (lattice) :
1198s   0.3750000000      0.3750000000      0.3750000000    
1198s See GEOMETRY.OUT for new atomic positions
1198s 
1198s Warning(gndstate): failed to reach self-consistency after    2 loops
1198s 
1198s +-----------------------+
1198s | Current task :      5 |
1198s +-----------------------+
1199s 
1199s Info(genkmat):      1 of      2 k-points
1199s Info(genkmat):      2 of      2 k-points
1199s Info(hartfock): self-consistent loop number :    1
1199s Info(eveqnhf):      1 of      2 k-points
1199s Info(eveqnhf):      2 of      2 k-points
1199s Info(hartfock): self-consistent loop number :    2
1199s Info(eveqnhf):      1 of      2 k-points
1199s Info(eveqnhf):      2 of      2 k-points
1200s Info(exxengy):      1 of      2 k-points
1200s Info(exxengy):      2 of      2 k-points
1200s 
1200s +-----------------------+
1200s | Current task :    500 |
1200s +-----------------------+
1200s 
1200s Info(testcheck): passed all tests
1200s 
1200s +------------------+
1200s | Elk code stopped |
1200s +------------------+
1200s  Passed
1200s 
1200s Running test in directory test_013...
1200s 
1200s +---------------------------------+
1200s | Elk code version 9.2.12 started |
1200s +---------------------------------+
1200s 
1200s Number of MPI processes :      1
1200s Number of OpenMP threads per MPI process :    2
1200s Total number of threads (MPI x OpenMP) :      2
1200s Maximum OpenMP nesting level :    4
1200s Number of OpenMP threads at first nesting level :    2
1200s Number of MKL threads :    2
1200s 
1200s RAM disk enabled
1200s 
1200s +-----------------------+
1200s | Current task :      0 |
1200s +-----------------------+
1200s Info(checkmt): changed muffin-tin radius of species   1 (Fe) from   2.4000 to   2.3828
1200s Info(checkmt): changed muffin-tin radius of species   2 (Al) from   2.2000 to   2.1842
1209s 
1209s Warning(gndstate): failed to reach self-consistency after    4 loops
1214s 
1214s +-----------------------+
1214s | Current task :    500 |
1214s +-----------------------+
1214s 
1214s Info(testcheck): passed all tests
1214s 
1214s +------------------+
1214s | Elk code stopped |
1214s +------------------+
1214s  Passed
1214s 
1214s Running test in directory test_014...
1215s 
1215s +---------------------------------+
1215s | Elk code version 9.2.12 started |
1215s +---------------------------------+
1215s 
1215s Number of MPI processes :      1
1215s Number of OpenMP threads per MPI process :    2
1215s Total number of threads (MPI x OpenMP) :      2
1215s Maximum OpenMP nesting level :    4
1215s Number of OpenMP threads at first nesting level :    2
1215s Number of MKL threads :    2
1215s 
1215s RAM disk enabled
1215s 
1215s +-----------------------+
1215s | Current task :      0 |
1215s +-----------------------+
1215s Info(checkmt): changed muffin-tin radius of species   1 (Si) from   2.2000 to   2.1964
1215s 
1215s Info(findsymcrys): atomic basis shift (lattice) :
1215s   0.3750000000      0.3750000000      0.3750000000    
1215s See GEOMETRY.OUT for new atomic positions
1215s Info(oepvcl):      1 of      8 k-points
1215s Info(oepvcl):      2 of      8 k-points
1216s Info(oepvcl):      3 of      8 k-points
1216s Info(oepvcl):      4 of      8 k-points
1217s Info(oepvcl):      5 of      8 k-points
1217s Info(oepvcl):      6 of      8 k-points
1218s Info(oepvcl):      7 of      8 k-points
1218s Info(oepvcl):      8 of      8 k-points
1220s Info(oepmain): done   10 iterations of   20
1221s Info(oepmain): done   20 iterations of   20
1221s 
1221s Warning(gndstate): failed to reach self-consistency after    2 loops
1221s Info(oepvcl):      1 of      8 k-points
1221s Info(oepvcl):      2 of      8 k-points
1222s Info(oepvcl):      3 of      8 k-points
1222s Info(oepvcl):      4 of      8 k-points
1223s Info(oepvcl):      5 of      8 k-points
1223s Info(oepvcl):      6 of      8 k-points
1224s Info(oepvcl):      7 of      8 k-points
1224s Info(oepvcl):      8 of      8 k-points
1226s Info(oepmain): done   10 iterations of   20
1227s Info(oepmain): done   20 iterations of   20
1227s Info(exxengy):      5 of      8 k-points
1227s Info(exxengy):      1 of      8 k-points
1227s Info(exxengy):      2 of      8 k-points
1227s Info(exxengy):      6 of      8 k-points
1227s Info(exxengy):      3 of      8 k-points
1227s Info(exxengy):      7 of      8 k-points
1227s Info(exxengy):      4 of      8 k-points
1228s Info(exxengy):      8 of      8 k-points
1228s 
1228s +-----------------------+
1228s | Current task :    500 |
1228s +-----------------------+
1228s 
1228s Info(testcheck): passed all tests
1228s 
1228s +------------------+
1228s | Elk code stopped |
1228s +------------------+
1228s  Passed
1228s 
1228s Running test in directory test_018...
1228s 
1228s +---------------------------------+
1228s | Elk code version 9.2.12 started |
1228s +---------------------------------+
1228s 
1228s Number of MPI processes :      1
1228s Number of OpenMP threads per MPI process :    2
1228s Total number of threads (MPI x OpenMP) :      2
1228s Maximum OpenMP nesting level :    4
1228s Number of OpenMP threads at first nesting level :    2
1228s Number of MKL threads :    2
1228s 
1228s RAM disk enabled
1228s 
1228s +-----------------------+
1228s | Current task :      0 |
1228s +-----------------------+
1230s 
1230s +-----------------------+
1230s | Current task :    205 |
1230s +-----------------------+
1230s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P1.OUT
1240s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P1.OUT
1254s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P1.OUT
1265s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P2.OUT
1275s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P2.OUT
1289s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P2.OUT
1300s Info(phonon): working on DYN_Q0000_0000_0000_S01_A001_P3.OUT
1310s Info(phonon): working on DYN_Q0102_0000_0000_S01_A001_P3.OUT
1321s Info(phonon): working on DYN_Q0102_0102_0102_S01_A001_P3.OUT
1333s Info(dyntask): nothing more to do
1333s 
1333s +-----------------------+
1333s | Current task :    210 |
1333s +-----------------------+
1337s 
1337s Info(phdos):
1337s  phonon density of states written to PHDOS.OUT
1337s  thermodynamic properties written to THERMO.OUT
1337s 
1337s +-----------------------+
1337s | Current task :    500 |
1337s +-----------------------+
1337s 
1337s Info(testcheck): passed all tests
1337s 
1337s +------------------+
1337s | Elk code stopped |
1337s +------------------+
1337s  Passed
1337s autopkgtest [03:02:06]: test testsuite.sh: -----------------------]
1337s autopkgtest [03:02:06]: test testsuite.sh:  - - - - - - - - - - results - - - - - - - - - -
1337s testsuite.sh         PASS
1338s autopkgtest [03:02:07]: @@@@@@@@@@@@@@@@@@@@ summary
1338s testsuite.sh         PASS
1348s Creating nova instance adt-noble-amd64-elkcode-20240326-023949-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-amd64-server-20240325.img (UUID ba43860b-557a-4db2-b3f0-378a99bca08c)...